MD13G1034700.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0009769
Physical Location & Seq
Reverse (-)
2439928 .. 2442935
3008 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1034700.v1.1.491

Sequence Viewer

Length: 918 bp
ATGCATGATTGGCTGATTCTGTTGGTTCTCGCCGGGATTGATCTCGGTTTGAACTTGATAGAACCGTTTCACCGCTTTGTTGGGGAGGACATGATGACAGACCTGAAGTACCCCTTGAAAGACAATACAGTTCCCTTCTGGGCTGTTCCGATAATTGCGGTATTGTTGCCGCTTGCTGTCATTCTTGTGTACTACTTCATCCGAAAGGATGTCTATGATCTGCACCATGCCATTTTGGGCCTTCTATTCTCTGTCTTCATAACCGCTGTTTTAACTGATGCGATCAAAGATGGTGTTGGTCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGGATTTGATCCGACCACAAAGGATGTCATATGTACTGGAATCAAGAGTGTCATTAAGGAAGGACATAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTGGTTTCCTTGCATGGTACTTATCGGGAAAAGTTAGGGTGTTTGATCGTAGGGGACATGTTGCAAAGCTCTGTATTGTCATTTTACCACTACTTACTGCAGCGCTGGTGGCAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGATGTTTTTGCTGGCGGGCTTATAGGAATCACCATTGCTTCATTTTGTTACCTGCAATTCTTTCCACCTCCATACGACACAGATGGTTGGGGACCTCACGCATACTTCCAGATGCTGGCGGAGTCTCAAAATCGTGAGGAGTCCTCGACTAACAACGCCAACAATCTTAGTGTGCAGCCAACAGAGCTTACGAGTGTATACGTCGAACCTCAGAACGGTGATGAATTGTCAAGAGGCAATAGCGGAGACAGAAACGCCATGCTAAATGGAAGGGAAAACGGGAGAAGACACCAGAGTGTCGGGTGTTTGTAG

Protein Analysis

306

Amino Acids

34.14

Weight (kDa)

6.1

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 78 - 223 5.6e-29 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 443, 666
AccB7I CCANNNNNTGG 1 cut(s) 721
AccI GTMKAC 2 cut(s) 301, 804
AciI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 725, 849
AclWI GGATC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 4 cut(s) 110, 191, 382, 476
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 2 cut(s) 721, 821
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 2 cut(s) 52, 118
AleI CACNNNNGTG 1 cut(s) 900
AluBI AGCT 3 cut(s) 420, 526, 793
AluI AGCT 3 cut(s) 420, 526, 793
Alw26I GTCTC 2 cut(s) 735, 846
AlwI GGATC 1 cut(s) 350
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 1 cut(s) 576
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 557, 781
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 3 cut(s) 238, 444, 698
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 62, 628, 836
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 2 cut(s) 444, 698
BbsI GAAGAC 2 cut(s) 247, 898
BbvI GCAGC 2 cut(s) 569, 793
BccI CCATC 3 cut(s) 284, 332, 683
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 2 cut(s) 735, 846
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 563
BfuAI ACCTGC 2 cut(s) 443, 666
BisI GCNGC 3 cut(s) 170, 558, 782
BlsI GCNGC 3 cut(s) 171, 559, 783
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 444, 698
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 238, 444, 698
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 268, 604, 708
BpiI GAAGAC 2 cut(s) 247, 898
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpuMI CCSGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 721, 821
Bse1I ACTGG 1 cut(s) 388
Bse3DI GCAATG 1 cut(s) 639
BseGI GGATG 3 cut(s) 198, 214, 376
BseLI CCNNNNNNNGG 2 cut(s) 721, 821
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 758
BseXI GCAGC 2 cut(s) 569, 793
BsgI GTGCAG 2 cut(s) 206, 800
BshFI GGCC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 525, 711
BslI CCNNNNNNNGG 2 cut(s) 721, 821
BsmAI GTCTC 2 cut(s) 735, 846
BsmFI GGGAC 2 cut(s) 525, 711
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 576
Bsp143I GATC 5 cut(s) 40, 217, 282, 355, 502
BspACI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 725, 849
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 1 cut(s) 829
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 2 cut(s) 443, 666
BspPI GGATC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 1 cut(s) 388
BssMI GATC 5 cut(s) 40, 217, 282, 355, 502
BssNAI GTATAC 1 cut(s) 805
Bst1107I GTATAC 1 cut(s) 805
Bst4CI ACNGT 3 cut(s) 66, 130, 824
BstC8I GCNNGC 5 cut(s) 174, 431, 619, 623, 723
BstDEI CTNAG 2 cut(s) 773, 816
BstF5I GGATG 3 cut(s) 198, 214, 376
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 5 cut(s) 43, 220, 285, 358, 505
BstMAI GTCTC 2 cut(s) 735, 846
BstMBI GATC 5 cut(s) 40, 217, 282, 355, 502
BstMWI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 2 cut(s) 569, 793
BstV2I GAAGAC 2 cut(s) 247, 898
BstZ17I GTATAC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 198, 214, 376
BveI ACCTGC 2 cut(s) 443, 666
Cac8I GCNNGC 5 cut(s) 174, 431, 619, 623, 723
CaiI CAGNNNCTG 1 cut(s) 721
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 3 cut(s) 238, 444, 698
Csp6I GTAC 4 cut(s) 109, 190, 381, 475
CviAII CATG 7 cut(s) 5, 91, 227, 441, 471, 515, 865
CviJI RGCY 8 cut(s) 13, 143, 240, 420, 526, 625, 784, 793
CviKI_1 RGCY 8 cut(s) 13, 143, 240, 420, 526, 625, 784, 793
CviQI GTAC 4 cut(s) 109, 190, 381, 475
DdeI CTNAG 2 cut(s) 773, 816
DpnI GATC 5 cut(s) 42, 219, 284, 357, 504
DpnII GATC 5 cut(s) 40, 217, 282, 355, 502
EciI GGCGGA 1 cut(s) 740
Eco47I GGWCC 2 cut(s) 444, 698
Eco47III AGCGCT 1 cut(s) 561
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 698
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
FalI AAGNNNNNCTT 2 cut(s) 98, 130
FaqI GGGAC 2 cut(s) 525, 711
FatI CATG 7 cut(s) 4, 90, 226, 440, 470, 514, 864
FauI CCCGC 2 cut(s) 422, 614
FauNDI CATATG 1 cut(s) 377
FblI GTMKAC 2 cut(s) 301, 804
Fnu4HI GCNGC 3 cut(s) 170, 558, 782
FokI GGATG 3 cut(s) 185, 221, 383
Fsp4HI GCNGC 3 cut(s) 170, 558, 782
GlaI GCGC 1 cut(s) 561
GluI GCNGC 3 cut(s) 170, 558, 782
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 562
Hin1II CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 5 cut(s) 16, 387, 633, 728, 746
HpaII CCGG 1 cut(s) 33
HphI GGTGA 3 cut(s) 62, 628, 836
Hpy166II GTNNAC 3 cut(s) 190, 302, 805
Hpy188I TCNGA 4 cut(s) 150, 203, 360, 819
Hpy188III TCNNGA 7 cut(s) 311, 391, 483, 576, 715, 740, 837
Hpy8I GTNNAC 3 cut(s) 190, 302, 805
Hpy99I CGWCG 1 cut(s) 812
HpyAV CCTTC 4 cut(s) 145, 251, 401, 870
HpyCH4III ACNGT 3 cut(s) 66, 130, 824
HpyCH4IV ACGT 1 cut(s) 807
HpyCH4V TGCA 8 cut(s) 4, 223, 452, 470, 521, 557, 661, 781
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
HpyF3I CTNAG 2 cut(s) 773, 816
HpySE526I ACGT 1 cut(s) 807
Hsp92II CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
HspAI GCGC 1 cut(s) 560
Kzo9I GATC 5 cut(s) 40, 217, 282, 355, 502
Lsp1109I GCAGC 2 cut(s) 569, 793
LweI GCATC 3 cut(s) 268, 604, 708
MaeII ACGT 1 cut(s) 807
MaeIII GTNAC 1 cut(s) 653
MalI GATC 5 cut(s) 42, 219, 284, 357, 504
MboI GATC 5 cut(s) 40, 217, 282, 355, 502
MboII GAAGA 2 cut(s) 247, 903
MluCI AATT 3 cut(s) 153, 662, 830
MlyI GAGTC 2 cut(s) 737, 755
MmeI TCCRAC 1 cut(s) 383
MnlI CCTC 8 cut(s) 79, 315, 684, 711, 736, 760, 825, 833
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 2 cut(s) 272, 402
MslI CAYNNNNRTG 2 cut(s) 185, 900
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
MwoI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
NciI CCSGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 377
NdeII GATC 5 cut(s) 40, 217, 282, 355, 502
NlaIII CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
NlaIV GGNNCC 1 cut(s) 699
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 518
OliI CACNNNNGTG 1 cut(s) 900
PaeR7I CTCGAG 1 cut(s) 576
PciI ACATGT 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 16, 387, 633
PflFI GACNNNGTC 1 cut(s) 306
PflMI CCANNNNNTGG 1 cut(s) 721
PkrI GCNGC 3 cut(s) 171, 559, 783
PleI GAGTC 2 cut(s) 736, 754
PpsI GAGTC 2 cut(s) 736, 754
PpuMI RGGWCCY 1 cut(s) 698
PscI ACATGT 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 698
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 3 cut(s) 238, 444, 698
PspPPI RGGWCCY 1 cut(s) 698
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 306
RsaI GTAC 4 cut(s) 110, 191, 382, 476
RsaNI GTAC 4 cut(s) 109, 190, 381, 475
RseI CAYNNNNRTG 2 cut(s) 185, 900
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 272, 402
SatI GCNGC 3 cut(s) 170, 558, 782
Sau3AI GATC 5 cut(s) 40, 217, 282, 355, 502
Sau96I GGNCC 3 cut(s) 238, 444, 698
SchI GAGTC 2 cut(s) 737, 755
ScrFI CCNGG 1 cut(s) 34
SfaNI GCATC 3 cut(s) 268, 604, 708
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 576
SinI GGWCC 2 cut(s) 444, 698
SlaI CTCGAG 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 185, 900
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 3 cut(s) 153, 662, 830
SsiI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 725, 849
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 3 cut(s) 66, 130, 824
TaiI ACGT 1 cut(s) 810
TaqI TCGA 4 cut(s) 301, 577, 752, 810
TasI AATT 3 cut(s) 153, 662, 830
TatI WGTACW 2 cut(s) 189, 380
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 16, 387, 633
Tru1I TTAA 2 cut(s) 272, 402
Tru9I TTAA 2 cut(s) 272, 402
TseI GCWGC 2 cut(s) 557, 781
TspDTI ATGAA 5 cut(s) 187, 247, 429, 636, 843
Tth111I GACNNNGTC 1 cut(s) 306
Van91I CCANNNNNTGG 1 cut(s) 721
VpaK11BI GGWCC 2 cut(s) 444, 698
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 576
XmiI GTMKAC 2 cut(s) 301, 804
XmnI GAANNNNTTC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.