Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0009769

Physical Location & Seq

Genomic Coordinates Reverse (-)

55344136 .. 55347103

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCCATCAAAAATGCCGGAGATTCAGTTGGGTTCTCACACCGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTTATTCTGGTGGTTCTTGCGGCCATAGATCTTGGTCTGAACTTGATAGAGCCTTTTCACCGCTTTGTTGGAGAGGATATGATGACAGACCTGAAATACCCATTGAAAGGCAATACAGTTCCCTTCTGGGGAGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTATTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCCGTTTTAACTGATGCAATCAAAGATGGTGTTGGAAGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTAATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACTGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTACTTTCATTGCATGGTACTTGTCAGGGAAAGTGAGGGTGTTTGATCGCAAGGGGCATGTTGCAAAACTCTGTATTGTCTTTTCTCCATTACTACTTGCAGCACTGGTAGCAGTTTCTCGAGTTGATGACTACTGGCATCACTGGCAAGATGTTTTTGCTGGAGGTCTTCTAGGAGTCATTGTTTCTTCATTTTGTTACTTGCAATTCTTTCCACCACCATATGATACTGATGGCTGGGGACCTCATGCGTACTTCCAGATGCTGGCAGACTCTGGAAATGCTCAGCCACCGACCACTAACGCAAGTAGTCTTAATGTACAGCAAGCAGAACTGGAGAGTATATATATCCATCATCATCAGGTTGTTGAAGCATCACAAACCAGTAGTGGAGACACAAACCCCATGCTAAATGGTGGGAGAATACACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

321

Amino Acids

35.87

Weight (kDa)

6.78

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	104 - 249	4.8e-28	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640
malus_domestica	MD13G1034700.v1.1 MD16G1036400.v1.1
prunus_persica	Prupe.1G317500_v2.0.a1
pyrus_communis	pycom13g03030 pycom16g03150
rosa_chinensis	RchiOBHm_Chr4g0434321 RchiOBHm_Chr4g0434331
rosa_laevigata	RLG00000006682
rosa_multiflora	Rmu_sc0000459.1_g000025 Rmu_sc0000459.1_g000027
rosa_roxburghii	Rroxscaffold_5G00375680 Rroxscaffold_5G00375690
rosa_rugosa	Rorug04G0275900.1
rosa_samantha	Rh4AG331200
rosa_wichuraiana	Rw4G028710 Rw4G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	521
AccB7I	CCANNNNNTGG	1 cut(s)	799
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	5 cut(s)	110, 151, 248, 342, 507
AclWI	GGATC	1 cut(s)	428
AcoI	YGGCCR	1 cut(s)	111
AfaI	GTAC	4 cut(s)	460, 554, 788, 855
AfiI	CCNNNNNNNGG	3 cut(s)	197, 218, 799
AgsI	TTSAA	3 cut(s)	62, 196, 905
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
Alw26I	GTCTC	2 cut(s)	54, 921
AlwI	GGATC	1 cut(s)	428
AlwNI	CAGNNNCTG	2 cut(s)	799, 809
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	2 cut(s)	111, 316
ApeKI	GCWGC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	522, 776
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	2 cut(s)	522, 776
BbsI	GAAGAC	2 cut(s)	385, 695
BbvI	GCAGC	1 cut(s)	647
BccI	CCATC	5 cut(s)	13, 263, 362, 761, 894
BceAI	ACGGC	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	54, 921
BfaI	CTAG	2 cut(s)	707, 964
BfuAI	ACCTGC	1 cut(s)	521
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	2 cut(s)	111, 636
BlpI	GCTNAGC	1 cut(s)	819
BlsI	GCNGC	2 cut(s)	112, 637
Bme18I	GGWCC	2 cut(s)	522, 776
BmeT110I	CYCGRG	1 cut(s)	654
BmgT120I	GGNCC	2 cut(s)	522, 776
BmiI	GGNNCC	1 cut(s)	777
BmsI	GCATC	4 cut(s)	346, 682, 786, 917
BpiI	GAAGAC	2 cut(s)	385, 695
BpmI	CTGGAG	3 cut(s)	483, 717, 890
Bpu1102I	GCTNAGC	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	54
BsaXI	ACNNNNNCTCC	6 cut(s)	11, 41, 48, 78, 702, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	197, 218, 799
Bse1I	ACTGG	6 cut(s)	466, 645, 674, 683, 873, 918
Bse3DI	GCAATG	1 cut(s)	543
BseGI	GGATG	1 cut(s)	292
BseLI	CCNNNNNNNGG	3 cut(s)	197, 218, 799
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	833
BseNI	ACTGG	6 cut(s)	466, 645, 674, 683, 873, 918
BseXI	GCAGC	1 cut(s)	647
BseYI	CCCAGC	1 cut(s)	771
BsgI	GTGCAG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	113, 318
BsiHKCI	CYCGRG	1 cut(s)	654
BsiSI	CCGG	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	789
BslI	CCNNNNNNNGG	3 cut(s)	197, 218, 799
BsmAI	GTCTC	2 cut(s)	54, 921
BsmFI	GGGAC	1 cut(s)	789
BsnI	GGCC	2 cut(s)	113, 318
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	654
Bsp1407I	TGTACA	1 cut(s)	853
Bsp143I	GATC	4 cut(s)	118, 295, 433, 580
Bsp1720I	GCTNAGC	1 cut(s)	819
BspACI	CCGC	5 cut(s)	110, 151, 248, 342, 507
BspANI	GGCC	2 cut(s)	113, 318
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	521
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	853
BsrI	ACTGG	6 cut(s)	466, 645, 674, 683, 873, 918
BssMI	GATC	4 cut(s)	118, 295, 433, 580
Bst4CI	ACNGT	3 cut(s)	43, 208, 243
Bst6I	CTCTTC	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	853
BstC8I	GCNNGC	4 cut(s)	252, 509, 801, 861
BstDEI	CTNAG	1 cut(s)	819
BstF5I	GGATG	1 cut(s)	292
BstKTI	GATC	4 cut(s)	121, 298, 436, 583
BstMAI	GTCTC	2 cut(s)	54, 921
BstMBI	GATC	4 cut(s)	118, 295, 433, 580
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 504, 644, 679
BstNSI	RCATGY	1 cut(s)	596
BstV1I	GCAGC	1 cut(s)	647
BstV2I	GAAGAC	2 cut(s)	385, 695
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BsuRI	GGCC	2 cut(s)	113, 318
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	638, 676
BveI	ACCTGC	1 cut(s)	521
Cac8I	GCNNGC	4 cut(s)	252, 509, 801, 861
CaiI	CAGNNNCTG	2 cut(s)	799, 809
Cfr13I	GGNCC	2 cut(s)	522, 776
Csp6I	GTAC	4 cut(s)	459, 553, 787, 854
CviAII	CATG	9 cut(s)	53, 83, 305, 454, 519, 549, 593, 782, 940
CviJI	RGCY	7 cut(s)	91, 113, 142, 318, 498, 771, 823
CviKI_1	RGCY	7 cut(s)	91, 113, 142, 318, 498, 771, 823
CviQI	GTAC	4 cut(s)	459, 553, 787, 854
DdeI	CTNAG	1 cut(s)	819
DpnI	GATC	4 cut(s)	120, 297, 435, 582
DpnII	GATC	4 cut(s)	118, 295, 433, 580
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco147I	AGGCCT	1 cut(s)	318
Eco31I	GGTCTC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	522, 776
Eco88I	CYCGRG	1 cut(s)	654
EcoO109I	RGGNCCY	1 cut(s)	776
EcoT22I	ATGCAT	1 cut(s)	84
FaeI	CATG	9 cut(s)	56, 86, 308, 457, 522, 552, 596, 785, 943
FaqI	GGGAC	1 cut(s)	789
FatI	CATG	9 cut(s)	52, 82, 304, 453, 518, 548, 592, 781, 939
FauI	CCCGC	1 cut(s)	500
FauNDI	CATATG	2 cut(s)	78, 757
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	111, 636
FokI	GGATG	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	111, 636
FspBI	CTAG	2 cut(s)	707, 964
GluI	GCNGC	2 cut(s)	111, 636
GsaI	CCCAGC	1 cut(s)	775
GsuI	CTGGAG	3 cut(s)	483, 717, 890
HaeIII	GGCC	2 cut(s)	113, 318
HapII	CCGG	1 cut(s)	17
Hin1II	CATG	9 cut(s)	56, 86, 308, 457, 522, 552, 596, 785, 943
HindIII	AAGCTT	1 cut(s)	496
HinfI	GANTC	3 cut(s)	22, 711, 806
HpaII	CCGG	1 cut(s)	17
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	268, 459
Hpy188I	TCNGA	3 cut(s)	129, 228, 281
Hpy188III	TCNNGA	4 cut(s)	389, 654, 793, 810
Hpy8I	GTNNAC	2 cut(s)	268, 459
HpyAV	CCTTC	4 cut(s)	223, 276, 329, 479
HpyCH4III	ACNGT	3 cut(s)	43, 208, 243
HpyCH4V	TGCA	9 cut(s)	82, 236, 301, 359, 530, 548, 599, 635, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 504, 644, 679
HpyF3I	CTNAG	1 cut(s)	819
Hsp92II	CATG	9 cut(s)	56, 86, 308, 457, 522, 552, 596, 785, 943
Kzo9I	GATC	4 cut(s)	118, 295, 433, 580
Lsp1109I	GCAGC	1 cut(s)	647
LweI	GCATC	4 cut(s)	346, 682, 786, 917
MaeI	CTAG	2 cut(s)	707, 964
MaeIII	GTNAC	3 cut(s)	243, 439, 731
MalI	GATC	4 cut(s)	120, 297, 435, 582
MboI	GATC	4 cut(s)	118, 295, 433, 580
MboII	GAAGA	4 cut(s)	390, 481, 695, 714
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	231, 740
MlyI	GAGTC	2 cut(s)	720, 800
MmeI	TCCRAC	2 cut(s)	139, 355
MnlI	CCTC	6 cut(s)	63, 157, 393, 564, 692, 789
Mph1103I	ATGCAT	1 cut(s)	84
MseI	TTAA	3 cut(s)	350, 480, 849
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	88, 504, 644, 679
NdeI	CATATG	2 cut(s)	78, 757
NdeII	GATC	4 cut(s)	118, 295, 433, 580
NlaIII	CATG	9 cut(s)	56, 86, 308, 457, 522, 552, 596, 785, 943
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	84
NspI	RCATGY	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	22
PflFI	GACNNNGTC	1 cut(s)	384
PflMI	CCANNNNNTGG	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	112, 637
PleI	GAGTC	2 cut(s)	719, 800
PpsI	GAGTC	2 cut(s)	719, 800
PpuMI	RGGWCCY	1 cut(s)	776
PsiI	TTATAA	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	771
PspN4I	GGNNCC	1 cut(s)	777
PspPI	GGNCC	2 cut(s)	522, 776
PspPPI	RGGWCCY	1 cut(s)	776
PstNI	CAGNNNCTG	2 cut(s)	799, 809
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	384
RsaI	GTAC	4 cut(s)	460, 554, 788, 855
RsaNI	GTAC	4 cut(s)	459, 553, 787, 854
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	350, 480, 849
SatI	GCNGC	2 cut(s)	111, 636
Sau3AI	GATC	4 cut(s)	118, 295, 433, 580
Sau96I	GGNCC	2 cut(s)	522, 776
SchI	GAGTC	2 cut(s)	720, 800
SetI	ASST	9 cut(s)	50, 74, 183, 385, 500, 535, 703, 781, 900
SfaNI	GCATC	4 cut(s)	346, 682, 786, 917
Sfr274I	CTCGAG	1 cut(s)	654
SinI	GGWCC	2 cut(s)	522, 776
SlaI	CTCGAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	654
SmoI	CTYRAG	1 cut(s)	654
Sse9I	AATT	2 cut(s)	231, 740
SseBI	AGGCCT	1 cut(s)	318
SsiI	CCGC	5 cut(s)	110, 151, 248, 342, 507
SspMI	CTAG	2 cut(s)	707, 964
StuI	AGGCCT	1 cut(s)	318
TaaI	ACNGT	3 cut(s)	43, 208, 243
TaqI	TCGA	1 cut(s)	655
TasI	AATT	2 cut(s)	231, 740
TatI	WGTACW	2 cut(s)	458, 853
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	350, 480, 849
Tru9I	TTAA	3 cut(s)	350, 480, 849
TscAI	CASTG	2 cut(s)	645, 683
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	65, 265, 507, 532, 714
TspRI	CASTG	2 cut(s)	645, 683
Tth111I	GACNNNGTC	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	799
VpaK11BI	GGWCC	2 cut(s)	522, 776
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XhoI	CTCGAG	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	2 cut(s)	707, 964
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.