Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000459.1

Orthogroup ID

OG0009769

Physical Location & Seq

Genomic Coordinates Reverse (-)

119024 .. 121063

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000459.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atgccggagattcagttgggttctcacaccgtaaggtctcatggagttcaagtggcgaggtttcatatgcatgattggcttattctggtggttcttgcggccatagatcttggtctgaacttgatagagccttttcaccgctttgttggagaggatatgatgacagacctgaaatacccattgaaaggcaatacagttcccttctggggtgttccaataattgcaatactgttaccgcttgccatcattattgtctactacttcatcagaagggatgtctatgatctgcaccatgccattttaggtaatacttctgtctttattcgtgattcatatcttggacagcggatttgcatgttgttgtatcctgatatcacttccacttttcatgttcattcaggccttctgttttctgtctttataaccgctgttttaactgaagcaatcaaagatggtgttggacgacctcgtccagactttttttggcgttgtttccctgatggaaaaggggtgtttgatcctgtcacaaagaatgtcatgtgtactggagagaagagtgtcattaaggaaggacacaaaagcttcccaagcgggcatacttcatggtcctttgcaggtcttactttcattgcatggtacttgtcagggaaagtgagggtgtttgatcgcaaggggcatgttgcaaaactctgtattgtcttttctccattactacttgcagcactggtagcagtttctcgagttgatgactactggcatcactggcaagatgtttttgctggaggtcttctaggagtcattgtttcttcattttgttacttgcaattctttccaccaccatatgatactgatggctggggacctcatgcgtacttccagatgctggcagactctggaaatgctcagccaccgtccactaacgcaagtagtcttaatgtacagcaagcagaactggagagtatatatatccatcatcatcaggttgttgaagcatcacaaaccagtagtggagacacaaaccccatgctaaatggtgggagaatacactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

349

Amino Acids

39.08

Weight (kDa)

6.53

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640
malus_domestica	MD13G1034700.v1.1 MD16G1036400.v1.1
prunus_persica	Prupe.1G317500_v2.0.a1
pyrus_communis	pycom13g03030 pycom16g03150
rosa_chinensis	RchiOBHm_Chr4g0434321 RchiOBHm_Chr4g0434331
rosa_laevigata	RLG00000006682
rosa_multiflora	Rmu_sc0000459.1_g000025 Rmu_sc0000459.1_g000027
rosa_roxburghii	Rroxscaffold_5G00375680 Rroxscaffold_5G00375690
rosa_rugosa	Rorug04G0275900.1
rosa_samantha	Rh4AG331200
rosa_wichuraiana	Rw4G028710 Rw4G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AasI	GACNNNNNNGTC	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	883
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	6 cut(s)	98, 139, 236, 346, 426, 591
AclWI	GGATC	1 cut(s)	512
AcoI	YGGCCR	1 cut(s)	99
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	4 cut(s)	544, 638, 872, 939
AfiI	CCNNNNNNNGG	3 cut(s)	185, 206, 883
AgsI	TTSAA	3 cut(s)	50, 184, 989
AluBI	AGCT	1 cut(s)	582
AluI	AGCT	1 cut(s)	582
Alw26I	GTCTC	2 cut(s)	42, 1005
AlwI	GGATC	1 cut(s)	512
AlwNI	CAGNNNCTG	2 cut(s)	883, 893
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	2 cut(s)	99, 400
ApeKI	GCWGC	1 cut(s)	719
ArsI	GACNNNNNNTTYG	2 cut(s)	333, 365
AspS9I	GGNCC	2 cut(s)	606, 860
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	738
AvaII	GGWCC	2 cut(s)	606, 860
BbsI	GAAGAC	1 cut(s)	779
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	5 cut(s)	251, 446, 494, 845, 978
BciVI	GTATCC	1 cut(s)	375
BcoDI	GTCTC	2 cut(s)	42, 1005
BfaI	CTAG	2 cut(s)	791, 1048
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	106
BisI	GCNGC	2 cut(s)	99, 720
BlpI	GCTNAGC	1 cut(s)	903
BlsI	GCNGC	2 cut(s)	100, 721
Bme18I	GGWCC	2 cut(s)	606, 860
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	606, 860
BmiI	GGNNCC	1 cut(s)	861
BmsI	GCATC	3 cut(s)	766, 870, 1001
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	3 cut(s)	567, 801, 974
Bpu1102I	GCTNAGC	1 cut(s)	903
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	42
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 36, 66, 786, 816
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 206, 883
Bse1I	ACTGG	6 cut(s)	550, 729, 758, 767, 957, 1002
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	333
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	185, 206, 883
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	917
BseNI	ACTGG	6 cut(s)	550, 729, 758, 767, 957, 1002
BseXI	GCAGC	1 cut(s)	731
BseYI	CCCAGC	1 cut(s)	855
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	101, 402
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	3 cut(s)	185, 206, 883
BsmAI	GTCTC	2 cut(s)	42, 1005
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	2 cut(s)	101, 402
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	738
Bsp1407I	TGTACA	1 cut(s)	937
Bsp143I	GATC	4 cut(s)	106, 283, 517, 664
Bsp1720I	GCTNAGC	1 cut(s)	903
BspACI	CCGC	6 cut(s)	98, 139, 236, 346, 426, 591
BspANI	GGCC	2 cut(s)	101, 402
BspCNI	CTCAG	1 cut(s)	916
BspLI	GGNNCC	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	937
BsrI	ACTGG	6 cut(s)	550, 729, 758, 767, 957, 1002
BssMI	GATC	4 cut(s)	106, 283, 517, 664
Bst4CI	ACNGT	4 cut(s)	31, 196, 231, 912
Bst6I	CTCTTC	1 cut(s)	548
BstAUI	TGTACA	1 cut(s)	937
BstC8I	GCNNGC	4 cut(s)	240, 593, 885, 945
BstDEI	CTNAG	1 cut(s)	903
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	4 cut(s)	109, 286, 520, 667
BstMAI	GTCTC	2 cut(s)	42, 1005
BstMBI	GATC	4 cut(s)	106, 283, 517, 664
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 588, 728, 763
BstNSI	RCATGY	2 cut(s)	358, 680
BstV1I	GCAGC	1 cut(s)	731
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	101, 402
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	2 cut(s)	722, 760
BveI	ACCTGC	1 cut(s)	605
Cac8I	GCNNGC	4 cut(s)	240, 593, 885, 945
CaiI	CAGNNNCTG	2 cut(s)	883, 893
Cfr13I	GGNCC	2 cut(s)	606, 860
Csp6I	GTAC	4 cut(s)	543, 637, 871, 938
CviJI	RGCY	7 cut(s)	79, 101, 130, 402, 582, 855, 907
CviKI_1	RGCY	7 cut(s)	79, 101, 130, 402, 582, 855, 907
CviQI	GTAC	4 cut(s)	543, 637, 871, 938
DdeI	CTNAG	1 cut(s)	903
DpnI	GATC	4 cut(s)	108, 285, 519, 666
DpnII	GATC	4 cut(s)	106, 283, 517, 664
DrdI	GACNNNNNNGTC	1 cut(s)	468
DseDI	GACNNNNNNGTC	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	548
EarI	CTCTTC	1 cut(s)	548
Eco147I	AGGCCT	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	606, 860
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	738
EcoO109I	RGGNCCY	1 cut(s)	860
EcoRV	GATATC	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	72
FaqI	GGGAC	1 cut(s)	873
FauI	CCCGC	1 cut(s)	584
FauNDI	CATATG	2 cut(s)	66, 841
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	99, 720
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	99, 720
FspBI	CTAG	2 cut(s)	791, 1048
GluI	GCNGC	2 cut(s)	99, 720
GsaI	CCCAGC	1 cut(s)	859
GsuI	CTGGAG	3 cut(s)	567, 801, 974
HaeIII	GGCC	2 cut(s)	101, 402
HapII	CCGG	1 cut(s)	5
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	4 cut(s)	10, 329, 795, 890
HpaII	CCGG	1 cut(s)	5
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	256, 543, 915
Hpy188I	TCNGA	2 cut(s)	117, 269
Hpy188III	TCNNGA	6 cut(s)	326, 368, 473, 738, 877, 894
Hpy8I	GTNNAC	3 cut(s)	256, 543, 915
HpyAV	CCTTC	4 cut(s)	211, 264, 413, 563
HpyCH4III	ACNGT	4 cut(s)	31, 196, 231, 912
HpyCH4V	TGCA	9 cut(s)	70, 224, 289, 354, 614, 632, 683, 719, 823
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 588, 728, 763
HpyF3I	CTNAG	1 cut(s)	903
Kzo9I	GATC	4 cut(s)	106, 283, 517, 664
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	3 cut(s)	766, 870, 1001
MaeI	CTAG	2 cut(s)	791, 1048
MaeIII	GTNAC	3 cut(s)	231, 523, 815
MalI	GATC	4 cut(s)	108, 285, 519, 666
MboI	GATC	4 cut(s)	106, 283, 517, 664
MboII	GAAGA	3 cut(s)	565, 779, 798
MflI	RGATCY	1 cut(s)	106
MluCI	AATT	2 cut(s)	219, 824
MlyI	GAGTC	2 cut(s)	804, 884
MmeI	TCCRAC	2 cut(s)	127, 439
MnlI	CCTC	6 cut(s)	51, 145, 477, 648, 776, 873
Mph1103I	ATGCAT	1 cut(s)	72
MseI	TTAA	3 cut(s)	434, 564, 933
MslI	CAYNNNNRTG	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	346, 428
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	4 cut(s)	76, 588, 728, 763
NdeI	CATATG	2 cut(s)	66, 841
NdeII	GATC	4 cut(s)	106, 283, 517, 664
NlaIV	GGNNCC	1 cut(s)	861
NmuCI	GTSAC	1 cut(s)	523
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	2 cut(s)	358, 680
PaeR7I	CTCGAG	1 cut(s)	738
PceI	AGGCCT	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	10, 329
PflFI	GACNNNGTC	1 cut(s)	468
PflMI	CCANNNNNTGG	1 cut(s)	883
PkrI	GCNGC	2 cut(s)	100, 721
PleI	GAGTC	2 cut(s)	803, 884
PpsI	GAGTC	2 cut(s)	803, 884
PpuMI	RGGWCCY	1 cut(s)	860
PsiI	TTATAA	1 cut(s)	422
Psp5II	RGGWCCY	1 cut(s)	860
PspFI	CCCAGC	1 cut(s)	855
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	2 cut(s)	606, 860
PspPPI	RGGWCCY	1 cut(s)	860
PstNI	CAGNNNCTG	2 cut(s)	883, 893
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	1 cut(s)	468
RsaI	GTAC	4 cut(s)	544, 638, 872, 939
RsaNI	GTAC	4 cut(s)	543, 637, 871, 938
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	434, 564, 933
SatI	GCNGC	2 cut(s)	99, 720
Sau3AI	GATC	4 cut(s)	106, 283, 517, 664
Sau96I	GGNCC	2 cut(s)	606, 860
SchI	GAGTC	2 cut(s)	804, 884
SfaNI	GCATC	3 cut(s)	766, 870, 1001
Sfr274I	CTCGAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	606, 860
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	738
SmoI	CTYRAG	1 cut(s)	738
Sse9I	AATT	2 cut(s)	219, 824
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	6 cut(s)	98, 139, 236, 346, 426, 591
SspMI	CTAG	2 cut(s)	791, 1048
StuI	AGGCCT	1 cut(s)	402
TaaI	ACNGT	4 cut(s)	31, 196, 231, 912
TaqI	TCGA	1 cut(s)	739
TasI	AATT	2 cut(s)	219, 824
TatI	WGTACW	2 cut(s)	542, 937
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	10, 329
Tru1I	TTAA	3 cut(s)	434, 564, 933
Tru9I	TTAA	3 cut(s)	434, 564, 933
TscAI	CASTG	2 cut(s)	729, 767
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	8 cut(s)	53, 253, 321, 377, 383, 591, 616, 798
TspRI	CASTG	2 cut(s)	729, 767
Tth111I	GACNNNGTC	1 cut(s)	468
Van91I	CCANNNNNTGG	1 cut(s)	883
VpaK11BI	GGWCC	2 cut(s)	606, 860
XceI	RCATGY	2 cut(s)	358, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	480
XhoI	CTCGAG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	791, 1048
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.