Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009769

Physical Location & Seq

Genomic Coordinates Reverse (-)

2064524 .. 2066314

Gene Structure 1791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCATGATTGGCTGATTCTGTTGGTTCTCGCCGGGATTGATCTCGGTTTGAACTTGATAGAACCGTTTCACCGCTTTGTTGGGGAGGACATGATGACAGACCTGAGTTACCCTTTGAAAGACAATACAGTTCCCTTCTGGGCTGTTCCGATAATTGCGGTATTGTTGCCGCTTGTTGTCATTCTTCTGTACTACTTCATCCGAAAGGATGTCTATGATCTGCACCATGCCAGTTTGGGCCTTCTATTCTCTGTCTTCATAACCGCTGTTTTAACTGATGCGATCAAAGATGGTGTTGGTCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTTCCTGATGGAAAAGGGGTATTTGATCAGACCACAAAGGATGTCATATGTACTGGAATCAAGAGTGTCATTAAGGAAGGGCATAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTGGTTTCCTTGCATGGTACTTATCGGGGAAAGTTAGGGTGTTTGATCGTAGGGGACATGTTGCAAAGCTCTGTATTGTCATTTTACCACTACTTACTGCAGCGCTGGTGGCAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGATGTTTTTGCTGGCGGGCTTATAGGAATCACCATTGCTTCATTTTGTTACCTGCAATTCTTTCCACCTCCATATGAAACAGATGGTTGGGGACCGCACGCATACTTTCAGATGCTGGCAGAGTCTCAAAATCGCGACGAGTCCTTGACTAACAACGCCAACAGTCTTTGTGTGCAGCCAACAGAGCTTACGAGTGTATACATCGAACCTCAGAACGGTGTTGAATTGTCAAGAGGCAATAGCGGAGACAGAAACGCCATGCTAAATGGAAGGGAAAACGGGAGAAGACAGCACAGTGTCGGGTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

306

Amino Acids

34.2

Weight (kDa)

6.1

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640
malus_domestica	MD13G1034700.v1.1 MD16G1036400.v1.1
prunus_persica	Prupe.1G317500_v2.0.a1
pyrus_communis	pycom13g03030 pycom16g03150
rosa_chinensis	RchiOBHm_Chr4g0434321 RchiOBHm_Chr4g0434331
rosa_laevigata	RLG00000006682
rosa_multiflora	Rmu_sc0000459.1_g000025 Rmu_sc0000459.1_g000027
rosa_roxburghii	Rroxscaffold_5G00375680 Rroxscaffold_5G00375690
rosa_rugosa	Rorug04G0275900.1
rosa_samantha	Rh4AG331200
rosa_wichuraiana	Rw4G028710 Rw4G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	443, 666
AccI	GTMKAC	2 cut(s)	301, 804
AccII	CGCG	1 cut(s)	741
AciI	CCGC	8 cut(s)	73, 158, 170, 264, 429, 621, 701, 849
AfaI	GTAC	3 cut(s)	191, 382, 476
AfeI	AGCGCT	1 cut(s)	561
AfiI	CCNNNNNNNGG	1 cut(s)	821
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	52, 118, 830
AluBI	AGCT	3 cut(s)	420, 526, 793
AluI	AGCT	3 cut(s)	420, 526, 793
Alw26I	GTCTC	2 cut(s)	735, 846
AlwNI	CAGNNNCTG	1 cut(s)	721
Ama87I	CYCGRG	1 cut(s)	576
Aor51HI	AGCGCT	1 cut(s)	561
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	557, 781
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	3 cut(s)	238, 444, 698
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	2 cut(s)	62, 628
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	2 cut(s)	444, 698
BbsI	GAAGAC	2 cut(s)	247, 898
BbvI	GCAGC	2 cut(s)	569, 793
BccI	CCATC	3 cut(s)	284, 332, 683
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	2 cut(s)	735, 846
BfmI	CTRYAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	563
BfuAI	ACCTGC	2 cut(s)	443, 666
BisI	GCNGC	3 cut(s)	170, 558, 782
BlsI	GCNGC	3 cut(s)	171, 559, 783
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	2 cut(s)	444, 698
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	3 cut(s)	238, 444, 698
BmiI	GGNNCC	1 cut(s)	699
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	3 cut(s)	268, 604, 708
BpiI	GAAGAC	2 cut(s)	247, 898
BpuMI	CCSGG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	231, 388
Bse3DI	GCAATG	1 cut(s)	639
BseGI	GGATG	3 cut(s)	198, 214, 376
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	2 cut(s)	95, 830
BseNI	ACTGG	2 cut(s)	231, 388
BseXI	GCAGC	2 cut(s)	569, 793
BsgI	GTGCAG	2 cut(s)	206, 800
Bsh1236I	CGCG	1 cut(s)	741
BshFI	GGCC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	525, 711
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	2 cut(s)	735, 846
BsmFI	GGGAC	2 cut(s)	525, 711
BsnI	GGCC	1 cut(s)	240
BsoBI	CYCGRG	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	40, 217, 282, 355, 502
Bsp68I	TCGCGA	1 cut(s)	741
BspACI	CCGC	8 cut(s)	73, 158, 170, 264, 429, 621, 701, 849
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	2 cut(s)	96, 829
BspFNI	CGCG	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	699
BspMAI	CTGCAG	1 cut(s)	559
BspMI	ACCTGC	2 cut(s)	443, 666
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	231, 388
BssMI	GATC	5 cut(s)	40, 217, 282, 355, 502
BssNAI	GTATAC	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	805
Bst4CI	ACNGT	5 cut(s)	66, 130, 770, 824, 902
BstC8I	GCNNGC	5 cut(s)	431, 619, 623, 705, 723
BstDEI	CTNAG	2 cut(s)	104, 816
BstF5I	GGATG	3 cut(s)	198, 214, 376
BstFNI	CGCG	1 cut(s)	741
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	43, 220, 285, 358, 505
BstMAI	GTCTC	2 cut(s)	735, 846
BstMBI	GATC	5 cut(s)	40, 217, 282, 355, 502
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 426, 566, 601, 790
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	32
BstSFI	CTRYAG	1 cut(s)	555
BstUI	CGCG	1 cut(s)	741
BstV1I	GCAGC	2 cut(s)	569, 793
BstV2I	GAAGAC	2 cut(s)	247, 898
BstZ17I	GTATAC	1 cut(s)	805
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	3 cut(s)	198, 214, 376
BtsIMutI	CAGTG	1 cut(s)	907
BtuMI	TCGCGA	1 cut(s)	741
BveI	ACCTGC	2 cut(s)	443, 666
Cac8I	GCNNGC	5 cut(s)	431, 619, 623, 705, 723
CaiI	CAGNNNCTG	1 cut(s)	721
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	3 cut(s)	238, 444, 698
Csp6I	GTAC	3 cut(s)	190, 381, 475
CviAII	CATG	7 cut(s)	5, 91, 227, 441, 471, 515, 865
CviJI	RGCY	8 cut(s)	13, 143, 240, 420, 526, 625, 784, 793
CviKI_1	RGCY	8 cut(s)	13, 143, 240, 420, 526, 625, 784, 793
CviQI	GTAC	3 cut(s)	190, 381, 475
DdeI	CTNAG	2 cut(s)	104, 816
DpnI	GATC	5 cut(s)	42, 219, 284, 357, 504
DpnII	GATC	5 cut(s)	40, 217, 282, 355, 502
Eco47I	GGWCC	2 cut(s)	444, 698
Eco47III	AGCGCT	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	576
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	7 cut(s)	8, 94, 230, 444, 474, 518, 868
FaqI	GGGAC	2 cut(s)	525, 711
FatI	CATG	7 cut(s)	4, 90, 226, 440, 470, 514, 864
FauI	CCCGC	2 cut(s)	422, 614
FauNDI	CATATG	2 cut(s)	377, 679
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	2 cut(s)	301, 804
Fnu4HI	GCNGC	3 cut(s)	170, 558, 782
FokI	GGATG	3 cut(s)	185, 221, 383
Fsp4HI	GCNGC	3 cut(s)	170, 558, 782
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	3 cut(s)	170, 558, 782
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	1 cut(s)	33
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	7 cut(s)	8, 94, 230, 444, 474, 518, 868
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	1 cut(s)	418
HinfI	GANTC	5 cut(s)	16, 387, 633, 728, 746
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	2 cut(s)	62, 628
Hpy166II	GTNNAC	2 cut(s)	302, 805
Hpy188I	TCNGA	5 cut(s)	150, 203, 360, 717, 819
Hpy188III	TCNNGA	6 cut(s)	311, 335, 391, 576, 740, 837
Hpy8I	GTNNAC	2 cut(s)	302, 805
Hpy99I	CGWCG	1 cut(s)	746
HpyAV	CCTTC	4 cut(s)	145, 251, 401, 870
HpyCH4III	ACNGT	5 cut(s)	66, 130, 770, 824, 902
HpyCH4V	TGCA	8 cut(s)	4, 223, 452, 470, 521, 557, 661, 781
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 426, 566, 601, 790
HpyF3I	CTNAG	2 cut(s)	104, 816
Hsp92II	CATG	7 cut(s)	8, 94, 230, 444, 474, 518, 868
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	5 cut(s)	40, 217, 282, 355, 502
Lsp1109I	GCAGC	2 cut(s)	569, 793
LweI	GCATC	3 cut(s)	268, 604, 708
MaeIII	GTNAC	2 cut(s)	107, 653
MalI	GATC	5 cut(s)	42, 219, 284, 357, 504
MboI	GATC	5 cut(s)	40, 217, 282, 355, 502
MboII	GAAGA	3 cut(s)	176, 247, 903
MluCI	AATT	3 cut(s)	153, 662, 830
MlyI	GAGTC	2 cut(s)	737, 755
MnlI	CCTC	5 cut(s)	79, 315, 684, 825, 833
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	272, 402
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	1 cut(s)	34
MvnI	CGCG	1 cut(s)	741
MwoI	GCNNNNNNNGC	5 cut(s)	10, 426, 566, 601, 790
NciI	CCSGG	1 cut(s)	34
NdeI	CATATG	2 cut(s)	377, 679
NdeII	GATC	5 cut(s)	40, 217, 282, 355, 502
NlaIII	CATG	7 cut(s)	8, 94, 230, 444, 474, 518, 868
NlaIV	GGNNCC	1 cut(s)	699
NruI	TCGCGA	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	576
PciI	ACATGT	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	16, 387, 633
PflFI	GACNNNGTC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	171, 559, 783
PleI	GAGTC	2 cut(s)	736, 754
PpsI	GAGTC	2 cut(s)	736, 754
PscI	ACATGT	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	3 cut(s)	238, 444, 698
PstI	CTGCAG	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	306
RruI	TCGCGA	1 cut(s)	741
RsaI	GTAC	3 cut(s)	191, 382, 476
RsaNI	GTAC	3 cut(s)	190, 381, 475
SalI	GTCGAC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	272, 402
SatI	GCNGC	3 cut(s)	170, 558, 782
Sau3AI	GATC	5 cut(s)	40, 217, 282, 355, 502
Sau96I	GGNCC	3 cut(s)	238, 444, 698
SchI	GAGTC	2 cut(s)	737, 755
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	9 cut(s)	105, 307, 422, 457, 528, 660, 676, 795, 817
SfaNI	GCATC	3 cut(s)	268, 604, 708
SfcI	CTRYAG	1 cut(s)	555
Sfr274I	CTCGAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	444, 698
SlaI	CTCGAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	3 cut(s)	153, 662, 830
SsiI	CCGC	8 cut(s)	73, 158, 170, 264, 429, 621, 701, 849
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	5 cut(s)	66, 130, 770, 824, 902
TaqI	TCGA	3 cut(s)	301, 577, 810
TasI	AATT	3 cut(s)	153, 662, 830
TatI	WGTACW	2 cut(s)	189, 380
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	16, 387, 633
Tru1I	TTAA	2 cut(s)	272, 402
Tru9I	TTAA	2 cut(s)	272, 402
TscAI	CASTG	1 cut(s)	907
TseI	GCWGC	2 cut(s)	557, 781
TspDTI	ATGAA	5 cut(s)	187, 247, 429, 636, 696
TspRI	CASTG	1 cut(s)	907
Tth111I	GACNNNGTC	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	444, 698
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	318
XhoI	CTCGAG	1 cut(s)	576
XmiI	GTMKAC	2 cut(s)	301, 804
XmnI	GAANNNNTTC	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.