Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009769

Physical Location & Seq

Genomic Coordinates Forward (+)

30572805 .. 30576307

Gene Structure 3503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G317500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGAGACAAAGATACTAAGGAGATATTTTCCTCTCCCATTCCTCTGACTTTTGTAAATTTTTATGCACAATGTATGCTTTCGTTAAGAATTGTTCATTTTGTTTTTTTACTCTGCATGTATGGAATTCGATGTTTATTTAGTCAAAAAATGCCAGAAATTCAGTTGGGTTCTCACACTGTAAGATCTCATGGAGTAAAGGTATTGAGGATTCATATGCATGACTGGCTGATTCTACTGGTTCTTGCGGCGATAGATCTGGGTTTGAACTTGATAGAACCTTTTCACCGCTTTGTTGGAGAGGACATGATGACAGACCTGAAATACCCATTGAAAGACAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAGTACTGTTGCCACTTGCTGTCATTCTTGTTTACTACTTCATCCGAAAGGATGTCTATGATCTGCACCACGCCATTTTAGGCCTTCTATTTTCCATCTTTATAACCGCTGTTTTAACTGATGCAATCAAAGATGGTGTTGGTCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTGATGGCAAAGGGGTGTTTGATCCAATCACAAAGAATGTCATGTGTACTGGAAGCAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCCAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTGGTTTCATTGCATGGTATCTATCAGGGAAAGTTAGGGTGTTTGATCGTAGAGGACATGTTGCAAAGCTCTGTATTGTCTTTCTACCATTACTTCTTGCGGCAATGGTAGCAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGATGTTTTTGCTGGCGGGCTTATAGGAATCACCATTGCTTCATTTTGTTACCTGCAATTCTTTCCACCTCCGTATGACACAGACGGTTGGGGACCTCATGCGTACTTTCAGATGCTGGCAGAGTCTCAAAATCGCGATGAGGCCTTGTCTCCCAATGCCAATAGTCTCAGTGTGCAGCAAACAGAGCTTGAGAGTATATACATCCAGTCTCAGCATGGTGTTGAAACATCACGAGGCTATAGTGGAGACACAAACCCCATTCTGAATGGGCGGGAAAGTGGGAGACACTTGAGTGTAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

375

Amino Acids

42.27

Weight (kDa)

7.26

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640
malus_domestica	MD13G1034700.v1.1 MD16G1036400.v1.1
prunus_persica	Prupe.1G317500_v2.0.a1
pyrus_communis	pycom13g03030 pycom16g03150
rosa_chinensis	RchiOBHm_Chr4g0434321 RchiOBHm_Chr4g0434331
rosa_laevigata	RLG00000006682
rosa_multiflora	Rmu_sc0000459.1_g000025 Rmu_sc0000459.1_g000027
rosa_roxburghii	Rroxscaffold_5G00375680 Rroxscaffold_5G00375690
rosa_rugosa	Rorug04G0275900.1
rosa_samantha	Rh4AG331200
rosa_wichuraiana	Rw4G028710 Rw4G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
Acc36I	ACCTGC	2 cut(s)	659, 882
AccI	GTMKAC	1 cut(s)	517
AccII	CGCG	1 cut(s)	957
AciI	CCGC	7 cut(s)	248, 289, 480, 645, 773, 837, 1093
AclWI	GGATC	1 cut(s)	566
AcsI	RAATTY	3 cut(s)	58, 126, 159
AfaI	GTAC	3 cut(s)	378, 598, 926
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	730
AgsI	TTSAA	3 cut(s)	268, 334, 1046
AleI	CACNNNNGTG	1 cut(s)	1113
AluBI	AGCT	3 cut(s)	636, 742, 1009
AluI	AGCT	3 cut(s)	636, 742, 1009
Alw26I	GTCTC	6 cut(s)	951, 975, 992, 1035, 1062, 1099
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	937
Ama87I	CYCGRG	1 cut(s)	792
AoxI	GGCC	2 cut(s)	454, 963
ApeKI	GCWGC	1 cut(s)	997
ApoI	RAATTY	3 cut(s)	58, 126, 159
Asp700I	GAANNNNTTC	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	660, 914
AsuHPI	GGTGA	2 cut(s)	278, 844
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	2 cut(s)	660, 914
BauI	CACGAG	1 cut(s)	1053
BbvI	GCAGC	1 cut(s)	1009
BccI	CCATC	3 cut(s)	476, 500, 548
BcoDI	GTCTC	6 cut(s)	951, 975, 992, 1035, 1062, 1099
BfmI	CTRYAG	1 cut(s)	1060
BfuAI	ACCTGC	2 cut(s)	659, 882
BglII	AGATCT	2 cut(s)	185, 256
BisI	GCNGC	3 cut(s)	249, 774, 998
BlsI	GCNGC	3 cut(s)	250, 775, 999
BmcAI	AGTACT	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	660, 914
BmeT110I	CYCGRG	1 cut(s)	792
BmgT120I	GGNCC	2 cut(s)	660, 914
BmiI	GGNNCC	1 cut(s)	915
BmsI	GCATC	3 cut(s)	484, 820, 924
BpuEI	CTTGAG	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	4 cut(s)	230, 243, 604, 1027
Bse3DI	GCAATG	3 cut(s)	681, 783, 855
BseGI	GGATG	3 cut(s)	414, 430, 1023
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	3 cut(s)	681, 783, 855
BseMII	CTCAG	2 cut(s)	1003, 1046
BseNI	ACTGG	4 cut(s)	230, 243, 604, 1027
BseXI	GCAGC	1 cut(s)	1009
BseYI	CCCAGC	1 cut(s)	641
BsgI	GTGCAG	2 cut(s)	422, 1016
Bsh1236I	CGCG	1 cut(s)	957
BshFI	GGCC	2 cut(s)	456, 965
BsiHKCI	CYCGRG	1 cut(s)	792
BslFI	GGGAC	1 cut(s)	927
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	6 cut(s)	951, 975, 992, 1035, 1062, 1099
BsmFI	GGGAC	1 cut(s)	927
BsnI	GGCC	2 cut(s)	456, 965
BsoBI	CYCGRG	1 cut(s)	792
Bsp143I	GATC	5 cut(s)	185, 256, 433, 571, 718
Bsp68I	TCGCGA	1 cut(s)	957
BspACI	CCGC	7 cut(s)	248, 289, 480, 645, 773, 837, 1093
BspANI	GGCC	2 cut(s)	456, 965
BspCNI	CTCAG	2 cut(s)	1002, 1045
BspFNI	CGCG	1 cut(s)	957
BspLI	GGNNCC	1 cut(s)	915
BspMI	ACCTGC	2 cut(s)	659, 882
BspPI	GGATC	1 cut(s)	566
BsrDI	GCAATG	3 cut(s)	681, 783, 855
BsrI	ACTGG	4 cut(s)	230, 243, 604, 1027
BssMI	GATC	5 cut(s)	185, 256, 433, 571, 718
BssSI	CACGAG	1 cut(s)	1053
Bst2BI	CACGAG	1 cut(s)	1053
Bst4CI	ACNGT	4 cut(s)	181, 346, 381, 908
BstC8I	GCNNGC	4 cut(s)	647, 835, 839, 939
BstDEI	CTNAG	3 cut(s)	18, 989, 1032
BstF5I	GGATG	3 cut(s)	414, 430, 1023
BstFNI	CGCG	1 cut(s)	957
BstKTI	GATC	5 cut(s)	188, 259, 436, 574, 721
BstMAI	GTCTC	6 cut(s)	951, 975, 992, 1035, 1062, 1099
BstMBI	GATC	5 cut(s)	185, 256, 433, 571, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	226, 642, 782, 817, 1006
BstNSI	RCATGY	2 cut(s)	121, 734
BstSFI	CTRYAG	1 cut(s)	1060
BstUI	CGCG	1 cut(s)	957
BstV1I	GCAGC	1 cut(s)	1009
BstX2I	RGATCY	2 cut(s)	185, 256
BstYI	RGATCY	2 cut(s)	185, 256
BsuRI	GGCC	2 cut(s)	456, 965
BtgZI	GCGATG	1 cut(s)	972
BtsCI	GGATG	3 cut(s)	414, 430, 1023
BtsIMutI	CAGTG	2 cut(s)	177, 997
BtuMI	TCGCGA	1 cut(s)	957
BveI	ACCTGC	2 cut(s)	659, 882
Cac8I	GCNNGC	4 cut(s)	647, 835, 839, 939
CaiI	CAGNNNCTG	1 cut(s)	937
Cfr13I	GGNCC	2 cut(s)	660, 914
Csp6I	GTAC	3 cut(s)	377, 597, 925
CviJI	RGCY	9 cut(s)	229, 456, 636, 742, 841, 965, 1009, 1059, 1122
CviKI_1	RGCY	9 cut(s)	229, 456, 636, 742, 841, 965, 1009, 1059, 1122
CviQI	GTAC	3 cut(s)	377, 597, 925
DdeI	CTNAG	3 cut(s)	18, 989, 1032
DpnI	GATC	5 cut(s)	187, 258, 435, 573, 720
DpnII	GATC	5 cut(s)	185, 256, 433, 571, 718
Eco147I	AGGCCT	2 cut(s)	456, 965
Eco47I	GGWCC	2 cut(s)	660, 914
Eco88I	CYCGRG	1 cut(s)	792
EcoO109I	RGGNCCY	1 cut(s)	914
EcoRI	GAATTC	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	222
FaqI	GGGAC	1 cut(s)	927
FauI	CCCGC	3 cut(s)	638, 830, 1086
FauNDI	CATATG	1 cut(s)	216
FblI	GTMKAC	1 cut(s)	517
Fnu4HI	GCNGC	3 cut(s)	249, 774, 998
FokI	GGATG	3 cut(s)	401, 437, 1010
Fsp4HI	GCNGC	3 cut(s)	249, 774, 998
GluI	GCNGC	3 cut(s)	249, 774, 998
GsaI	CCCAGC	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	456, 965
HincII	GTYRAC	1 cut(s)	518
HindII	GTYRAC	1 cut(s)	518
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	4 cut(s)	211, 232, 849, 944
HphI	GGTGA	2 cut(s)	278, 844
Hpy166II	GTNNAC	3 cut(s)	406, 518, 597
Hpy188I	TCNGA	5 cut(s)	48, 366, 419, 933, 1086
Hpy188III	TCNNGA	4 cut(s)	527, 792, 956, 1053
Hpy8I	GTNNAC	3 cut(s)	406, 518, 597
HpyAV	CCTTC	3 cut(s)	361, 467, 617
HpyCH4III	ACNGT	4 cut(s)	181, 346, 381, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	226, 642, 782, 817, 1006
HpyF3I	CTNAG	3 cut(s)	18, 989, 1032
Kzo9I	GATC	5 cut(s)	185, 256, 433, 571, 718
Lsp1109I	GCAGC	1 cut(s)	1009
LweI	GCATC	3 cut(s)	484, 820, 924
MaeIII	GTNAC	1 cut(s)	869
MalI	GATC	5 cut(s)	187, 258, 435, 573, 720
MboI	GATC	5 cut(s)	185, 256, 433, 571, 718
MflI	RGATCY	2 cut(s)	185, 256
MluCI	AATT	6 cut(s)	58, 90, 126, 159, 369, 878
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	222
MroXI	GAANNNNTTC	1 cut(s)	282
MseI	TTAA	3 cut(s)	86, 488, 618
MslI	CAYNNNNRTG	2 cut(s)	219, 1113
MspA1I	CMGCKG	2 cut(s)	482, 645
MvnI	CGCG	1 cut(s)	957
MwoI	GCNNNNNNNGC	5 cut(s)	226, 642, 782, 817, 1006
NdeI	CATATG	1 cut(s)	216
NdeII	GATC	5 cut(s)	185, 256, 433, 571, 718
NlaIV	GGNNCC	1 cut(s)	915
NruI	TCGCGA	1 cut(s)	957
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	121, 734
OliI	CACNNNNGTG	1 cut(s)	1113
PaeR7I	CTCGAG	1 cut(s)	792
PceI	AGGCCT	2 cut(s)	456, 965
PciI	ACATGT	1 cut(s)	730
PdmI	GAANNNNTTC	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	211, 232, 849
PflFI	GACNNNGTC	1 cut(s)	522
PkrI	GCNGC	3 cut(s)	250, 775, 999
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
PpuMI	RGGWCCY	1 cut(s)	914
PscI	ACATGT	1 cut(s)	730
PsiI	TTATAA	1 cut(s)	476
Psp5II	RGGWCCY	1 cut(s)	914
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	1 cut(s)	915
PspPI	GGNCC	2 cut(s)	660, 914
PspPPI	RGGWCCY	1 cut(s)	914
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	2 cut(s)	185, 256
PsyI	GACNNNGTC	1 cut(s)	522
RruI	TCGCGA	1 cut(s)	957
RsaI	GTAC	3 cut(s)	378, 598, 926
RsaNI	GTAC	3 cut(s)	377, 597, 925
RseI	CAYNNNNRTG	2 cut(s)	219, 1113
SalI	GTCGAC	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	86, 488, 618
SatI	GCNGC	3 cut(s)	249, 774, 998
Sau3AI	GATC	5 cut(s)	185, 256, 433, 571, 718
Sau96I	GGNCC	2 cut(s)	660, 914
ScaI	AGTACT	1 cut(s)	378
SchI	GAGTC	1 cut(s)	953
SfaNI	GCATC	3 cut(s)	484, 820, 924
SfcI	CTRYAG	1 cut(s)	1060
Sfr274I	CTCGAG	1 cut(s)	792
SinI	GGWCC	2 cut(s)	660, 914
SlaI	CTCGAG	1 cut(s)	792
SmiMI	CAYNNNNRTG	2 cut(s)	219, 1113
SmlI	CTYRAG	3 cut(s)	792, 1010, 1111
SmoI	CTYRAG	3 cut(s)	792, 1010, 1111
Sse9I	AATT	6 cut(s)	58, 90, 126, 159, 369, 878
SseBI	AGGCCT	2 cut(s)	456, 965
SsiI	CCGC	7 cut(s)	248, 289, 480, 645, 773, 837, 1093
StuI	AGGCCT	2 cut(s)	456, 965
TaaI	ACNGT	4 cut(s)	181, 346, 381, 908
TaqI	TCGA	3 cut(s)	130, 517, 793
TasI	AATT	6 cut(s)	58, 90, 126, 159, 369, 878
TatI	WGTACW	2 cut(s)	376, 596
TauI	GCSGC	2 cut(s)	251, 776
TfiI	GAWTC	3 cut(s)	211, 232, 849
Tru1I	TTAA	3 cut(s)	86, 488, 618
Tru9I	TTAA	3 cut(s)	86, 488, 618
TscAI	CASTG	2 cut(s)	184, 997
TseI	GCWGC	1 cut(s)	997
TspDTI	ATGAA	6 cut(s)	86, 203, 403, 645, 670, 852
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	2 cut(s)	184, 997
Tth111I	GACNNNGTC	1 cut(s)	522
VpaK11BI	GGWCC	2 cut(s)	660, 914
XapI	RAATTY	3 cut(s)	58, 126, 159
XceI	RCATGY	2 cut(s)	121, 734
XcmI	CCANNNNNNNNNTGG	2 cut(s)	534, 1034
XhoI	CTCGAG	1 cut(s)	792
XmiI	GTMKAC	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	378
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.