Rroxscaffold_5G00375680

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009769
Physical Location & Seq
Reverse (-)
56443250 .. 56449456
6207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00375680.1

Sequence Viewer

Length: 1206 bp
ATGGGTCGCCTCCTTGCTCCGGTCGTCTCCGTGGTGGTCTCCGTCGACGATTCGAGCCCACGGCGGCGCCGCAAGTCTGCACGTTTGAGATCCGACCATTGGATCTTCATGATAAGTTTGGAGGATGATCTTAAGGGCGATCGTGAGGATCCGACCGTTAGATCATCGTTTAATTTCGATCCGACCGTGACTGATGGTTTGAGATGGTGGACGATCGTGGATCGTATTTTGGGCTGTTGTGAAGACGCAGCGGGATTGGAGTCGAAAATGCCGGAGATTCAGTTGCGTTCTCACACCGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTGATTCTGGTGGTTCTTGCGGCCATATATCTTGGTCTGAACTTGATTGAGCCTTTTCACCGCTTTGTTGGAGAGGATATGATGACAGACCTGAAATACCCAATGAAAGGCAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTGTTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCTGTTTTAACTGAGGCAATCAAAAATGGTGTTGGACGACCTCGTCCAGACTTTTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACCGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATGCTTCAGGGTGCTTCGCAGGTCTTACTTTCATTGCATGGTACTTGTCCGGGAAAGTGAGGGTGTTTGATCGCAAGGGGCATGTTGCAAAACTCTGTATTGTCTTTTCTCCATTACTTCTTGCAGCACTGGTAGCAGTTTCTCGAGTTGATGACTACTGGCATCACTGGCAAGATGTTTTTGCTGGAGGTCTTCTAGGAGTCATTGTTTCTTCATTTTGTTACTTGCAATTCTTTCCACCACCATATGATACTGATGGTTGGGGACCTCATGCGTACTTCCAGATGCTGGCAGACTCTGGAAATGCTCAGCCACCGTCCACTAACGCAAGTAATCTTAATGTGCAGCCAGCAGAACTGGAGAGTATATATATCCATCATCATCAGGTTGTTGAAGCATCACAAACCAGTAGTGGCCTGGAGACACAAACCCCATGCTAA

Protein Analysis

401

Amino Acids

44.98

Weight (kDa)

6.62

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 189 - 334 1.9e-27 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AasI GACNNNNNNGTC 1 cut(s) 639
Acc36I ACCTGC 1 cut(s) 776
AccB1I GGYRCC 1 cut(s) 66
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccI GTMKAC 2 cut(s) 45, 522
AciI CCGC 8 cut(s) 64, 70, 251, 365, 406, 503, 597, 762
AclWI GGATC 7 cut(s) 84, 110, 143, 156, 173, 228, 683
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 3 cut(s) 715, 809, 1043
AfiI CCNNNNNNNGG 5 cut(s) 19, 99, 452, 473, 1054
AflII CTTAAG 1 cut(s) 131
AgsI TTSAA 2 cut(s) 317, 1160
AjnI CCWGG 1 cut(s) 1182
AluBI AGCT 1 cut(s) 753
AluI AGCT 1 cut(s) 753
Alw26I GTCTC 4 cut(s) 31, 43, 309, 1181
AlwI GGATC 7 cut(s) 84, 110, 143, 156, 173, 228, 683
AlwNI CAGNNNCTG 2 cut(s) 1054, 1064
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 3 cut(s) 366, 571, 1180
ApeKI GCWGC 3 cut(s) 248, 890, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 1031
AsuC2I CCSGG 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 909
AvaII GGWCC 1 cut(s) 1031
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 2 cut(s) 249, 950
BbvI GCAGC 3 cut(s) 260, 902, 1123
BccI CCATC 6 cut(s) 188, 198, 518, 665, 1016, 1149
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 1184
BcnI CCSGG 1 cut(s) 817
BcoDI GTCTC 4 cut(s) 31, 43, 309, 1181
BfaI CTAG 1 cut(s) 962
BfoI RGCGCY 1 cut(s) 70
BfrI CTTAAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 776
BisI GCNGC 6 cut(s) 65, 70, 249, 366, 891, 1112
BlpI GCTNAGC 1 cut(s) 1074
BlsI GCNGC 6 cut(s) 66, 71, 250, 367, 892, 1113
Bme1390I CCNGG 2 cut(s) 817, 1184
Bme18I GGWCC 1 cut(s) 1031
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 3 cut(s) 68, 150, 1032
BmrFI CCNGG 2 cut(s) 817, 1184
BmsI GCATC 3 cut(s) 937, 1041, 1172
BpiI GAAGAC 2 cut(s) 249, 950
BpmI CTGGAG 3 cut(s) 972, 1145, 1205
Bpu1102I GCTNAGC 1 cut(s) 1074
BpuMI CCSGG 1 cut(s) 817
BsaHI GRCGYC 1 cut(s) 67
BsaI GGTCTC 2 cut(s) 43, 309
BsaJI CCNNGG 2 cut(s) 30, 59
BsaWI WCCGGW 2 cut(s) 19, 716
BsaXI ACNNNNNCTCC 6 cut(s) 266, 296, 303, 333, 957, 987
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 99, 452, 473, 1054
Bse1I ACTGG 5 cut(s) 900, 929, 938, 1128, 1173
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 1 cut(s) 1184
BseDI CCNNGG 2 cut(s) 30, 59
BseGI GGATG 2 cut(s) 130, 547
BseLI CCNNNNNNNGG 5 cut(s) 19, 99, 452, 473, 1054
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 600, 1088
BseNI ACTGG 5 cut(s) 900, 929, 938, 1128, 1173
BseXI GCAGC 3 cut(s) 260, 902, 1123
BsgI GTGCAG 3 cut(s) 63, 539, 1130
Bsh1285I CGRYCG 5 cut(s) 24, 142, 156, 186, 216
BshFI GGCC 3 cut(s) 368, 573, 1182
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 5 cut(s) 24, 142, 156, 186, 216
BsiHKCI CYCGRG 1 cut(s) 909
BsiSI CCGG 4 cut(s) 20, 272, 717, 816
BslFI GGGAC 1 cut(s) 1044
BslI CCNNNNNNNGG 5 cut(s) 19, 99, 452, 473, 1054
BsmAI GTCTC 4 cut(s) 31, 43, 309, 1181
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 1044
BsnI GGCC 3 cut(s) 368, 573, 1182
Bso31I GGTCTC 2 cut(s) 43, 309
BsoBI CYCGRG 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 59
Bsp1720I GCTNAGC 1 cut(s) 1074
BspACI CCGC 8 cut(s) 64, 70, 251, 365, 406, 503, 597, 762
BspANI GGCC 3 cut(s) 368, 573, 1182
BspCNI CTCAG 2 cut(s) 601, 1087
BspHI TCATGA 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 68, 150, 1032
BspMI ACCTGC 1 cut(s) 776
BspPI GGATC 7 cut(s) 84, 110, 143, 156, 173, 228, 683
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 131
BspTNI GGTCTC 2 cut(s) 43, 309
BsrDI GCAATG 1 cut(s) 798
BsrI ACTGG 5 cut(s) 900, 929, 938, 1128, 1173
BssECI CCNNGG 2 cut(s) 30, 59
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 1184
Bst4CI ACNGT 6 cut(s) 157, 187, 298, 463, 498, 1083
Bst6I CTCTTC 1 cut(s) 719
BstACI GRCGYC 1 cut(s) 67
BstAFI CTTAAG 1 cut(s) 131
BstC8I GCNNGC 5 cut(s) 507, 764, 768, 1056, 1116
BstDEI CTNAG 2 cut(s) 609, 1074
BstDSI CCRYGG 2 cut(s) 30, 59
BstF5I GGATG 2 cut(s) 130, 547
BstH2I RGCGCY 1 cut(s) 70
BstHHI GCGC 1 cut(s) 69
BstMAI GTCTC 4 cut(s) 31, 43, 309, 1181
BstMCI CGRYCG 5 cut(s) 24, 142, 156, 186, 216
BstMWI GCNNNNNNNGC 4 cut(s) 343, 759, 899, 934
BstNI CCWGG 1 cut(s) 1184
BstNSI RCATGY 2 cut(s) 770, 851
BstSCI CCNGG 2 cut(s) 815, 1182
BstV1I GCAGC 3 cut(s) 260, 902, 1123
BstV2I GAAGAC 2 cut(s) 249, 950
BstX2I RGATCY 3 cut(s) 89, 102, 148
BstYI RGATCY 3 cut(s) 89, 102, 148
BsuRI GGCC 3 cut(s) 368, 573, 1182
BtgI CCRYGG 2 cut(s) 30, 59
BtsCI GGATG 2 cut(s) 130, 547
BtsIMutI CAGTG 2 cut(s) 893, 931
BveI ACCTGC 1 cut(s) 776
Cac8I GCNNGC 5 cut(s) 507, 764, 768, 1056, 1116
CaiI CAGNNNCTG 2 cut(s) 1054, 1064
CciI TCATGA 1 cut(s) 108
CfoI GCGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 1031
CseI GACGC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 714, 808, 1042
CviQI GTAC 3 cut(s) 714, 808, 1042
DdeI CTNAG 2 cut(s) 609, 1074
DinI GGCGCC 1 cut(s) 68
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 719
EarI CTCTTC 1 cut(s) 719
Eco147I AGGCCT 1 cut(s) 573
Eco24I GRGCYC 1 cut(s) 59
Eco31I GGTCTC 2 cut(s) 43, 309
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 1 cut(s) 756
Eco88I CYCGRG 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRII CCWGG 1 cut(s) 1182
EcoT22I ATGCAT 1 cut(s) 339
EcoT38I GRGCYC 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 68
EheI GGCGCC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 31
FaqI GGGAC 1 cut(s) 1044
FauI CCCGC 2 cut(s) 244, 755
FauNDI CATATG 2 cut(s) 333, 1012
FblI GTMKAC 2 cut(s) 45, 522
Fnu4HI GCNGC 6 cut(s) 65, 70, 249, 366, 891, 1112
FokI GGATG 2 cut(s) 137, 554
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 6 cut(s) 65, 70, 249, 366, 891, 1112
FspBI CTAG 1 cut(s) 962
GlaI GCGC 1 cut(s) 68
GluI GCNGC 6 cut(s) 65, 70, 249, 366, 891, 1112
GsuI CTGGAG 3 cut(s) 972, 1145, 1205
HaeII RGCGCY 1 cut(s) 70
HaeIII GGCC 3 cut(s) 368, 573, 1182
HapII CCGG 4 cut(s) 20, 272, 717, 816
HgaI GACGC 1 cut(s) 254
HhaI GCGC 1 cut(s) 69
Hin1I GRCGYC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 67
HinP1I GCGC 1 cut(s) 67
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 751
HinfI GANTC 6 cut(s) 50, 260, 277, 349, 966, 1061
HpaII CCGG 4 cut(s) 20, 272, 717, 816
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 5 cut(s) 46, 210, 523, 714, 1086
Hpy188I TCNGA 6 cut(s) 94, 153, 183, 384, 483, 536
Hpy188III TCNNGA 6 cut(s) 109, 143, 644, 909, 1048, 1065
Hpy8I GTNNAC 5 cut(s) 46, 210, 523, 714, 1086
Hpy99I CGWCG 2 cut(s) 47, 50
HpyAV CCTTC 4 cut(s) 478, 531, 584, 734
HpyCH4III ACNGT 6 cut(s) 157, 187, 298, 463, 498, 1083
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 9 cut(s) 80, 337, 491, 556, 803, 854, 890, 994, 1111
HpyF10VI GCNNNNNNNGC 4 cut(s) 343, 759, 899, 934
HpyF3I CTNAG 2 cut(s) 609, 1074
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 67
HspAI GCGC 1 cut(s) 67
KasI GGCGCC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 22
Lsp1109I GCAGC 3 cut(s) 260, 902, 1123
LweI GCATC 3 cut(s) 937, 1041, 1172
MaeI CTAG 1 cut(s) 962
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 4 cut(s) 187, 498, 694, 986
MboII GAAGA 5 cut(s) 97, 254, 736, 950, 969
MflI RGATCY 3 cut(s) 89, 102, 148
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 3 cut(s) 172, 486, 995
Mly113I GGCGCC 1 cut(s) 67
MlyI GAGTC 3 cut(s) 269, 975, 1055
MmeI TCCRAC 5 cut(s) 117, 176, 206, 394, 610
Mph1103I ATGCAT 1 cut(s) 339
MseI TTAA 5 cut(s) 132, 171, 605, 735, 1104
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 2 cut(s) 251, 599
MspCI CTTAAG 1 cut(s) 131
MspI CCGG 4 cut(s) 20, 272, 717, 816
MspR9I CCNGG 2 cut(s) 817, 1184
MvaI CCWGG 1 cut(s) 1184
MwoI GCNNNNNNNGC 4 cut(s) 343, 759, 899, 934
NarI GGCGCC 1 cut(s) 67
NciI CCSGG 1 cut(s) 817
NdeI CATATG 2 cut(s) 333, 1012
NlaIV GGNNCC 3 cut(s) 68, 150, 1032
NmuCI GTSAC 2 cut(s) 187, 694
NsiI ATGCAT 1 cut(s) 339
NspI RCATGY 2 cut(s) 770, 851
PaeI GCATGC 1 cut(s) 770
PaeR7I CTCGAG 1 cut(s) 909
PagI TCATGA 1 cut(s) 108
PceI AGGCCT 1 cut(s) 573
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 3 cut(s) 50, 277, 349
PflFI GACNNNGTC 1 cut(s) 639
PflMI CCANNNNNTGG 1 cut(s) 1054
PfoI TCCNGGA 1 cut(s) 815
PkrI GCNGC 6 cut(s) 66, 71, 250, 367, 892, 1113
Ple19I CGATCG 2 cut(s) 142, 216
PleI GAGTC 3 cut(s) 268, 974, 1055
PluTI GGCGCC 1 cut(s) 70
PpsI GAGTC 3 cut(s) 268, 974, 1055
PpuMI RGGWCCY 1 cut(s) 1031
PsiI TTATAA 1 cut(s) 593
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 1 cut(s) 1182
PspGI CCWGG 1 cut(s) 1182
PspN4I GGNNCC 3 cut(s) 68, 150, 1032
PspPI GGNCC 1 cut(s) 1031
PspPPI RGGWCCY 1 cut(s) 1031
PstNI CAGNNNCTG 2 cut(s) 1054, 1064
PsuI RGATCY 3 cut(s) 89, 102, 148
PsyI GACNNNGTC 1 cut(s) 639
PvuI CGATCG 2 cut(s) 142, 216
RsaI GTAC 3 cut(s) 715, 809, 1043
RsaNI GTAC 3 cut(s) 714, 808, 1042
RseI CAYNNNNRTG 1 cut(s) 336
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 5 cut(s) 132, 171, 605, 735, 1104
SatI GCNGC 6 cut(s) 65, 70, 249, 366, 891, 1112
Sau96I GGNCC 1 cut(s) 1031
SchI GAGTC 3 cut(s) 269, 975, 1055
ScrFI CCNGG 2 cut(s) 817, 1184
SduI GDGCHC 1 cut(s) 59
SfaNI GCATC 3 cut(s) 937, 1041, 1172
SfoI GGCGCC 1 cut(s) 68
Sfr274I CTCGAG 1 cut(s) 909
SgrDI CGTCGACG 1 cut(s) 44
SinI GGWCC 1 cut(s) 1031
SlaI CTCGAG 1 cut(s) 909
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 131, 909
SmoI CTYRAG 2 cut(s) 131, 909
SphI GCATGC 1 cut(s) 770
Sse9I AATT 3 cut(s) 172, 486, 995
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 8 cut(s) 64, 70, 251, 365, 406, 503, 597, 762
SspDI GGCGCC 1 cut(s) 66
SspMI CTAG 1 cut(s) 962
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 2 cut(s) 815, 1182
TaaI ACNGT 6 cut(s) 157, 187, 298, 463, 498, 1083
TaiI ACGT 1 cut(s) 85
TaqI TCGA 5 cut(s) 45, 53, 177, 263, 910
TasI AATT 3 cut(s) 172, 486, 995
TauI GCSGC 3 cut(s) 67, 72, 368
TfiI GAWTC 3 cut(s) 50, 277, 349
Tru1I TTAA 5 cut(s) 132, 171, 605, 735, 1104
Tru9I TTAA 5 cut(s) 132, 171, 605, 735, 1104
TscAI CASTG 2 cut(s) 900, 938
TseFI GTSAC 2 cut(s) 187, 694
TseI GCWGC 3 cut(s) 248, 890, 1111
Tsp45I GTSAC 2 cut(s) 187, 694
TspDTI ATGAA 6 cut(s) 97, 320, 464, 520, 787, 969
TspGWI ACGGA 2 cut(s) 19, 31
TspRI CASTG 2 cut(s) 900, 938
Tth111I GACNNNGTC 1 cut(s) 639
Van91I CCANNNNNTGG 1 cut(s) 1054
Vha464I CTTAAG 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 1031
XceI RCATGY 2 cut(s) 770, 851
XcmI CCANNNNNNNNNTGG 2 cut(s) 651, 1180
XhoI CTCGAG 1 cut(s) 909
XmiI GTMKAC 2 cut(s) 45, 522
XspI CTAG 1 cut(s) 962
Zsp2I ATGCAT 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.