Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009769

Physical Location & Seq

Genomic Coordinates Reverse (-)

2621890 .. 2624758

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1036400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCATGATTGGCTGATTCTGTTGGTTCTGGCCGGAATTGATCTTGGTTTGAACCTGATAGAGCCGTTTCACCGCTTTGTTGGGGAGGACATGATGACAGACCTCAAGTACCCTTTGAAAGTCAATACAGTTCCCTTCTGGAGTGTCCCGATAATTGCGGTACTGTTGCCGCTTGCTGTCATTCTTGTGTACTACTTCATCCGAAAGGATGTCTATGATCTGCACCAGGCCATTTTGGGCCTTCTATTCTCTGTCTTCATAACCGCCATTTTAACTGATGCAATCAAAGATGGTGTTGGTCGACCTCGTCCGGACTTCTTTTGGCGTTGTTTCCCCGATGGAAAAGGGGTATTTGATCCTACCACAAAGGATGTCATGTGTACTGGAAGCAAGAGTGTCATTAAGGAAGGACATAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTGGTTTCCTTGCATGGTACTTATCGGGGAAAGTACGGGCGTTTGATCGTAGAGGACATGTTGATAAGCTTTGTATTGTCTTTCTACCACTACTTATTGCAGCACTGGTGGGAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGATGTTTGTGCTGGCAGCCTTATAGGAATCACCATTGCTTCATTTTGTTACCTGCAATTCTTTCCACCTCCATACGACGCAGATGGTTGGGGACCTCATGCATACTTTCAGATGCTGGCAGAATCTCAAAATCGCGATGAATCCTCGTCTAACAATGCCAATAGTCTTAGTGTGCAGCCAGCAGAGCTGACGAGTATATACGTCCAACCTCACAATGGCGCTGAATTATCGCGAGGCAATAGCGGAGACACGAACTCCATGCTACACGGACACGAAAATGGGAGAAGGCACCCGAGTATAGGCTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008195 GO:0009987 GO:0016020 GO:0016021 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031224 GO:0031226 GO:0042578 GO:0044237 GO:0044425 GO:0044459 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

306

Amino Acids

34.03

Weight (kDa)

6.2

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP2	PF01569	78 - 223	1.4e-30	PAP2 superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009769)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640 FvH4_4g26640
malus_domestica	MD13G1034700.v1.1 MD16G1036400.v1.1
prunus_persica	Prupe.1G317500_v2.0.a1
pyrus_communis	pycom13g03030 pycom16g03150
rosa_chinensis	RchiOBHm_Chr4g0434321 RchiOBHm_Chr4g0434331
rosa_laevigata	RLG00000006682
rosa_multiflora	Rmu_sc0000459.1_g000025 Rmu_sc0000459.1_g000027
rosa_roxburghii	Rroxscaffold_5G00375680 Rroxscaffold_5G00375690
rosa_rugosa	Rorug04G0275900.1
rosa_samantha	Rh4AG331200
rosa_wichuraiana	Rw4G028710 Rw4G028720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	443, 666
AccB1I	GGYRCC	1 cut(s)	894
AccI	GTMKAC	1 cut(s)	301
AccII	CGCG	2 cut(s)	741, 838
AccIII	TCCGGA	1 cut(s)	310
AciI	CCGC	6 cut(s)	73, 158, 170, 264, 429, 849
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	30
AfaI	GTAC	6 cut(s)	110, 162, 191, 382, 476, 492
AfiI	CCNNNNNNNGG	2 cut(s)	821, 905
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	2 cut(s)	52, 118
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	3 cut(s)	420, 526, 793
AluI	AGCT	3 cut(s)	420, 526, 793
Alw26I	GTCTC	1 cut(s)	846
AlwI	GGATC	1 cut(s)	350
AlwNI	CAGNNNCTG	1 cut(s)	721
Ama87I	CYCGRG	2 cut(s)	576, 898
Aor13HI	TCCGGA	1 cut(s)	310
AoxI	GGCC	3 cut(s)	30, 228, 238
ApeKI	GCWGC	3 cut(s)	557, 621, 781
AspLEI	GCGC	1 cut(s)	827
AspS9I	GGNCC	3 cut(s)	238, 444, 698
AsuHPI	GGTGA	2 cut(s)	62, 628
AvaI	CYCGRG	2 cut(s)	576, 898
AvaII	GGWCC	2 cut(s)	444, 698
BanI	GGYRCC	1 cut(s)	894
BbsI	GAAGAC	1 cut(s)	247
BbvI	GCAGC	3 cut(s)	569, 633, 793
BccI	CCATC	3 cut(s)	284, 332, 683
BceAI	ACGGC	1 cut(s)	49
BcgI	CGANNNNNNTGC	2 cut(s)	847, 881
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	1 cut(s)	846
BfoI	RGCGCY	1 cut(s)	828
BfuAI	ACCTGC	2 cut(s)	443, 666
BisI	GCNGC	4 cut(s)	170, 558, 622, 782
BlsI	GCNGC	4 cut(s)	171, 559, 623, 783
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	444, 698
BmeT110I	CYCGRG	2 cut(s)	576, 898
BmgT120I	GGNCC	3 cut(s)	238, 444, 698
BmiI	GGNNCC	2 cut(s)	699, 896
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	3 cut(s)	268, 604, 708
BpiI	GAAGAC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	845, 875
Bsc4I	CCNNNNNNNGG	2 cut(s)	821, 905
Bse1I	ACTGG	2 cut(s)	388, 567
Bse3DI	GCAATG	1 cut(s)	639
BseAI	TCCGGA	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	227
BseGI	GGATG	3 cut(s)	198, 214, 376
BseLI	CCNNNNNNNGG	2 cut(s)	821, 905
BseMI	GCAATG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	388, 567
BseXI	GCAGC	3 cut(s)	569, 633, 793
BsgI	GTGCAG	2 cut(s)	206, 800
Bsh1236I	CGCG	2 cut(s)	741, 838
BshFI	GGCC	3 cut(s)	32, 230, 240
BshNI	GGYRCC	1 cut(s)	894
BsiHKCI	CYCGRG	2 cut(s)	576, 898
BsiSI	CCGG	2 cut(s)	33, 311
BslFI	GGGAC	2 cut(s)	131, 711
BslI	CCNNNNNNNGG	2 cut(s)	821, 905
BsmAI	GTCTC	1 cut(s)	846
BsmFI	GGGAC	2 cut(s)	131, 711
BsnI	GGCC	3 cut(s)	32, 230, 240
BsoBI	CYCGRG	2 cut(s)	576, 898
Bsp13I	TCCGGA	1 cut(s)	310
Bsp143I	GATC	4 cut(s)	40, 217, 355, 502
Bsp68I	TCGCGA	2 cut(s)	741, 838
BspACI	CCGC	6 cut(s)	73, 158, 170, 264, 429, 849
BspANI	GGCC	3 cut(s)	32, 230, 240
BspEI	TCCGGA	1 cut(s)	310
BspFNI	CGCG	2 cut(s)	741, 838
BspLI	GGNNCC	2 cut(s)	699, 896
BspMI	ACCTGC	2 cut(s)	443, 666
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	894
BsrDI	GCAATG	1 cut(s)	639
BsrI	ACTGG	2 cut(s)	388, 567
BssMI	GATC	4 cut(s)	40, 217, 355, 502
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	130, 165
BstC8I	GCNNGC	5 cut(s)	174, 431, 619, 723, 786
BstDEI	CTNAG	1 cut(s)	773
BstF5I	GGATG	3 cut(s)	198, 214, 376
BstFNI	CGCG	2 cut(s)	741, 838
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	827
BstKTI	GATC	4 cut(s)	43, 220, 358, 505
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	4 cut(s)	40, 217, 355, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 426, 601, 790
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	741, 838
BstV1I	GCAGC	3 cut(s)	569, 633, 793
BstV2I	GAAGAC	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	32, 230, 240
BtgZI	GCGATG	1 cut(s)	756
BtsCI	GGATG	3 cut(s)	198, 214, 376
BtsIMutI	CAGTG	1 cut(s)	560
BtuMI	TCGCGA	2 cut(s)	741, 838
BveI	ACCTGC	2 cut(s)	443, 666
Cac8I	GCNNGC	5 cut(s)	174, 431, 619, 723, 786
CaiI	CAGNNNCTG	1 cut(s)	721
CfoI	GCGC	1 cut(s)	827
Cfr13I	GGNCC	3 cut(s)	238, 444, 698
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	6 cut(s)	109, 161, 190, 381, 475, 491
CviAII	CATG	8 cut(s)	5, 91, 376, 441, 471, 515, 704, 865
CviQI	GTAC	6 cut(s)	109, 161, 190, 381, 475, 491
DdeI	CTNAG	1 cut(s)	773
DpnI	GATC	4 cut(s)	42, 219, 357, 504
DpnII	GATC	4 cut(s)	40, 217, 355, 502
EaeI	YGGCCR	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	444, 698
Eco88I	CYCGRG	2 cut(s)	576, 898
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRII	CCWGG	1 cut(s)	225
EcoT22I	ATGCAT	2 cut(s)	6, 709
FaeI	CATG	8 cut(s)	8, 94, 379, 444, 474, 518, 707, 868
FaqI	GGGAC	2 cut(s)	131, 711
FatI	CATG	8 cut(s)	4, 90, 375, 440, 470, 514, 703, 864
FauI	CCCGC	1 cut(s)	422
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	170, 558, 622, 782
FokI	GGATG	3 cut(s)	185, 221, 383
Fsp4HI	GCNGC	4 cut(s)	170, 558, 622, 782
GlaI	GCGC	1 cut(s)	826
GluI	GCNGC	4 cut(s)	170, 558, 622, 782
GsuI	CTGGAG	1 cut(s)	160
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	3 cut(s)	32, 230, 240
HapII	CCGG	2 cut(s)	33, 311
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	827
Hin1II	CATG	8 cut(s)	8, 94, 379, 444, 474, 518, 707, 868
Hin6I	GCGC	1 cut(s)	825
HinP1I	GCGC	1 cut(s)	825
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	418, 524
HinfI	GANTC	4 cut(s)	16, 633, 728, 746
HpaII	CCGG	2 cut(s)	33, 311
HphI	GGTGA	2 cut(s)	62, 628
Hpy166II	GTNNAC	3 cut(s)	190, 302, 381
Hpy188I	TCNGA	2 cut(s)	203, 717
Hpy188III	TCNNGA	6 cut(s)	139, 148, 311, 576, 740, 837
Hpy8I	GTNNAC	3 cut(s)	190, 302, 381
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	4 cut(s)	145, 251, 401, 885
HpyCH4III	ACNGT	2 cut(s)	130, 165
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	9 cut(s)	4, 223, 281, 452, 470, 557, 661, 707, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 426, 601, 790
HpyF3I	CTNAG	1 cut(s)	773
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	8 cut(s)	8, 94, 379, 444, 474, 518, 707, 868
HspAI	GCGC	1 cut(s)	825
Kpn2I	TCCGGA	1 cut(s)	310
Kzo9I	GATC	4 cut(s)	40, 217, 355, 502
Lsp1109I	GCAGC	3 cut(s)	569, 633, 793
LweI	GCATC	3 cut(s)	268, 604, 708
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	1 cut(s)	653
MalI	GATC	4 cut(s)	42, 219, 357, 504
MboI	GATC	4 cut(s)	40, 217, 355, 502
MboII	GAAGA	1 cut(s)	247
MluCI	AATT	4 cut(s)	36, 153, 662, 830
MmeI	TCCRAC	1 cut(s)	835
MnlI	CCTC	9 cut(s)	79, 113, 315, 503, 684, 711, 760, 825, 833
Mph1103I	ATGCAT	2 cut(s)	6, 709
MroI	TCCGGA	1 cut(s)	310
MseI	TTAA	2 cut(s)	272, 402
MslI	CAYNNNNRTG	2 cut(s)	185, 882
MspI	CCGG	2 cut(s)	33, 311
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	741, 838
MwoI	GCNNNNNNNGC	4 cut(s)	10, 426, 601, 790
NdeII	GATC	4 cut(s)	40, 217, 355, 502
NlaIII	CATG	8 cut(s)	8, 94, 379, 444, 474, 518, 707, 868
NlaIV	GGNNCC	2 cut(s)	699, 896
NruI	TCGCGA	2 cut(s)	741, 838
NsiI	ATGCAT	2 cut(s)	6, 709
NspI	RCATGY	1 cut(s)	518
PaeR7I	CTCGAG	1 cut(s)	576
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	4 cut(s)	16, 633, 728, 746
PflFI	GACNNNGTC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	171, 559, 623, 783
PpuMI	RGGWCCY	1 cut(s)	698
PscI	ACATGT	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	699, 896
PspPI	GGNCC	3 cut(s)	238, 444, 698
PspPPI	RGGWCCY	1 cut(s)	698
PstNI	CAGNNNCTG	1 cut(s)	721
PsyI	GACNNNGTC	1 cut(s)	306
RruI	TCGCGA	2 cut(s)	741, 838
RsaI	GTAC	6 cut(s)	110, 162, 191, 382, 476, 492
RsaNI	GTAC	6 cut(s)	109, 161, 190, 381, 475, 491
RseI	CAYNNNNRTG	2 cut(s)	185, 882
SalI	GTCGAC	1 cut(s)	300
SaqAI	TTAA	2 cut(s)	272, 402
SatI	GCNGC	4 cut(s)	170, 558, 622, 782
Sau3AI	GATC	4 cut(s)	40, 217, 355, 502
Sau96I	GGNCC	3 cut(s)	238, 444, 698
ScrFI	CCNGG	1 cut(s)	227
SfaNI	GCATC	3 cut(s)	268, 604, 708
Sfr274I	CTCGAG	1 cut(s)	576
SinI	GGWCC	2 cut(s)	444, 698
SlaI	CTCGAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	2 cut(s)	185, 882
SmlI	CTYRAG	2 cut(s)	104, 576
SmoI	CTYRAG	2 cut(s)	104, 576
Sse9I	AATT	4 cut(s)	36, 153, 662, 830
SsiI	CCGC	6 cut(s)	73, 158, 170, 264, 429, 849
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	130, 165
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	2 cut(s)	301, 577
TasI	AATT	4 cut(s)	36, 153, 662, 830
TatI	WGTACW	2 cut(s)	189, 380
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	16, 633, 728, 746
Tru1I	TTAA	2 cut(s)	272, 402
Tru9I	TTAA	2 cut(s)	272, 402
TscAI	CASTG	1 cut(s)	567
TseI	GCWGC	3 cut(s)	557, 621, 781
TspDTI	ATGAA	5 cut(s)	187, 247, 429, 636, 759
TspGWI	ACGGA	1 cut(s)	888
TspRI	CASTG	1 cut(s)	567
Tth111I	GACNNNGTC	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	444, 698
XceI	RCATGY	1 cut(s)	518
XcmI	CCANNNNNNNNNTGG	1 cut(s)	818
XhoI	CTCGAG	1 cut(s)	576
XmiI	GTMKAC	1 cut(s)	301
Zsp2I	ATGCAT	2 cut(s)	6, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.