RchiOBHm_Chr4g0434331

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009769
Physical Location & Seq
Reverse (-)
58148069 .. 58151916
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40279

Sequence Viewer

Length: 954 bp
ATGCCGGAGATTCAGTTGGGTTCTCACACAGTAAGGTCTCATGGAGTTCAAGTGGCGAGGTTTCATATGCATGATTGGCTGATTCTGGTGGTTCTTGCGGCCATAGATCTTGGTCTGAACTTGATAGAGCCTTTTCACCGCTTTGTTGGAGAGGATATGATGACAGACCTGAAATACCCATTGAAAGGCAATACAGTTCCCTTCTGGGGTGTTCCGATAATTGCAATACTGTTACCGCTTGCCATCATTGTTGTCTACTACTTCATCAGAAGGGATGTCTATGATCTGCACCATGCCATTTTAGGCCTTCTGTTTTCTGTCTTTATAACCGCCGTTTTAACTGATGCAATCAAAGATGGTGTTGGACGACCTCGTCCAGACTTCTTTTGGCGTTGTTTCCCTGATGGAAAAGGGGTGTTTGATCCTGTCACAAAGAATGTCATGTGTACTGGAGAGAAGAGTGTCATTAAGGAAGGACACAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTACTTTCATTGCATGGTACTTGTCAGGGAAAGTGAGGGTGTTTGATCGCAAGGGGCATGTTGCAAAACTCTGTATTGTCTTTTCTCCATTACTACTTGCAGCACTGGTAGCAGTTTCTCGAGTTGATGACTACTGGCATCACTGGCAAGATGTTTTTGCTGGAGGTCTTCTAGGAGTCATTGTTTCTTCATTTTGTTACTTGCAATTCTTTCCACCACCATATGATACTGATGGCTGGGGACCTCATGCGTACTTCCAGATGCTGTCAGACTCTGGAAATGCTCAGCCACCGTCCACTAACGCAAGTAGTCTTAATGTACAGCAAGCAGAACTGGAGAGTATATATATCCATCATCATCAGGTTGTTGAAGCATCACAAACCAGTAGTGGAGACACAAACCCCATGCTAAATGGTGGGAGAATACACTAG

Protein Analysis

317

Amino Acids

35.41

Weight (kDa)

6.48

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 100 - 245 2.9e-28 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AasI GACNNNNNNGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 255
AciI CCGC 5 cut(s) 98, 139, 236, 330, 495
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 4 cut(s) 448, 542, 776, 843
AfiI CCNNNNNNNGG 2 cut(s) 185, 206
AgsI TTSAA 3 cut(s) 50, 184, 893
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 42, 909
AlwI GGATC 1 cut(s) 416
AlwNI CAGNNNCTG 2 cut(s) 787, 797
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 2 cut(s) 99, 304
ApeKI GCWGC 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 510, 764
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 2 cut(s) 510, 764
BbsI GAAGAC 1 cut(s) 683
BbvI GCAGC 1 cut(s) 635
BccI CCATC 5 cut(s) 251, 350, 398, 749, 882
BceAI ACGGC 1 cut(s) 317
BcoDI GTCTC 2 cut(s) 42, 909
BfaI CTAG 2 cut(s) 695, 952
BfuAI ACCTGC 1 cut(s) 509
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 99, 624
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 2 cut(s) 100, 625
Bme18I GGWCC 2 cut(s) 510, 764
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 2 cut(s) 510, 764
BmiI GGNNCC 1 cut(s) 765
BmsI GCATC 4 cut(s) 334, 670, 774, 905
BpiI GAAGAC 1 cut(s) 683
BpmI CTGGAG 3 cut(s) 471, 705, 878
Bpu1102I GCTNAGC 1 cut(s) 807
BsaI GGTCTC 1 cut(s) 42
BsaXI ACNNNNNCTCC 5 cut(s) 29, 36, 66, 690, 720
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 206
Bse1I ACTGG 6 cut(s) 454, 633, 662, 671, 861, 906
Bse3DI GCAATG 1 cut(s) 531
BseGI GGATG 1 cut(s) 280
BseLI CCNNNNNNNGG 2 cut(s) 185, 206
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 6 cut(s) 454, 633, 662, 671, 861, 906
BseXI GCAGC 1 cut(s) 635
BseYI CCCAGC 1 cut(s) 759
BsgI GTGCAG 1 cut(s) 272
BshFI GGCC 2 cut(s) 101, 306
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 2 cut(s) 185, 206
BsmAI GTCTC 2 cut(s) 42, 909
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 2 cut(s) 101, 306
Bso31I GGTCTC 1 cut(s) 42
BsoBI CYCGRG 1 cut(s) 642
Bsp1407I TGTACA 1 cut(s) 841
Bsp143I GATC 4 cut(s) 106, 283, 421, 568
Bsp1720I GCTNAGC 1 cut(s) 807
BspACI CCGC 5 cut(s) 98, 139, 236, 330, 495
BspANI GGCC 2 cut(s) 101, 306
BspCNI CTCAG 1 cut(s) 820
BspLI GGNNCC 1 cut(s) 765
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 42
BsrDI GCAATG 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 841
BsrI ACTGG 6 cut(s) 454, 633, 662, 671, 861, 906
BssMI GATC 4 cut(s) 106, 283, 421, 568
Bst4CI ACNGT 4 cut(s) 31, 196, 231, 816
Bst6I CTCTTC 1 cut(s) 452
BstAUI TGTACA 1 cut(s) 841
BstC8I GCNNGC 3 cut(s) 240, 497, 849
BstDEI CTNAG 1 cut(s) 807
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 4 cut(s) 109, 286, 424, 571
BstMAI GTCTC 2 cut(s) 42, 909
BstMBI GATC 4 cut(s) 106, 283, 421, 568
BstMWI GCNNNNNNNGC 4 cut(s) 76, 492, 632, 667
BstNSI RCATGY 1 cut(s) 584
BstV1I GCAGC 1 cut(s) 635
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 2 cut(s) 101, 306
BtsCI GGATG 1 cut(s) 280
BtsIMutI CAGTG 2 cut(s) 626, 664
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 3 cut(s) 240, 497, 849
CaiI CAGNNNCTG 2 cut(s) 787, 797
Cfr13I GGNCC 2 cut(s) 510, 764
Csp6I GTAC 4 cut(s) 447, 541, 775, 842
CviAII CATG 9 cut(s) 41, 71, 293, 442, 507, 537, 581, 770, 928
CviJI RGCY 7 cut(s) 79, 101, 130, 306, 486, 759, 811
CviKI_1 RGCY 7 cut(s) 79, 101, 130, 306, 486, 759, 811
CviQI GTAC 4 cut(s) 447, 541, 775, 842
DdeI CTNAG 1 cut(s) 807
DpnI GATC 4 cut(s) 108, 285, 423, 570
DpnII GATC 4 cut(s) 106, 283, 421, 568
DrdI GACNNNNNNGTC 1 cut(s) 372
DseDI GACNNNNNNGTC 1 cut(s) 372
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 452
EarI CTCTTC 1 cut(s) 452
Eco147I AGGCCT 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 510, 764
Eco88I CYCGRG 1 cut(s) 642
EcoO109I RGGNCCY 1 cut(s) 764
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 9 cut(s) 44, 74, 296, 445, 510, 540, 584, 773, 931
FaqI GGGAC 1 cut(s) 777
FatI CATG 9 cut(s) 40, 70, 292, 441, 506, 536, 580, 769, 927
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 2 cut(s) 66, 745
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 99, 624
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 99, 624
FspBI CTAG 2 cut(s) 695, 952
GluI GCNGC 2 cut(s) 99, 624
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 3 cut(s) 471, 705, 878
HaeIII GGCC 2 cut(s) 101, 306
HapII CCGG 1 cut(s) 5
Hin1II CATG 9 cut(s) 44, 74, 296, 445, 510, 540, 584, 773, 931
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 10, 82, 699, 794
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 3 cut(s) 256, 447, 819
Hpy188I TCNGA 4 cut(s) 117, 216, 269, 793
Hpy188III TCNNGA 4 cut(s) 377, 642, 781, 798
Hpy8I GTNNAC 3 cut(s) 256, 447, 819
HpyAV CCTTC 4 cut(s) 211, 264, 317, 467
HpyCH4III ACNGT 4 cut(s) 31, 196, 231, 816
HpyCH4V TGCA 9 cut(s) 70, 224, 289, 347, 518, 536, 587, 623, 727
HpyF10VI GCNNNNNNNGC 4 cut(s) 76, 492, 632, 667
HpyF3I CTNAG 1 cut(s) 807
Hsp92II CATG 9 cut(s) 44, 74, 296, 445, 510, 540, 584, 773, 931
Kzo9I GATC 4 cut(s) 106, 283, 421, 568
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 4 cut(s) 334, 670, 774, 905
MaeI CTAG 2 cut(s) 695, 952
MaeIII GTNAC 3 cut(s) 231, 427, 719
MalI GATC 4 cut(s) 108, 285, 423, 570
MboI GATC 4 cut(s) 106, 283, 421, 568
MboII GAAGA 3 cut(s) 469, 683, 702
MflI RGATCY 1 cut(s) 106
MluCI AATT 2 cut(s) 219, 728
MlyI GAGTC 2 cut(s) 708, 788
MmeI TCCRAC 2 cut(s) 127, 343
MnlI CCTC 6 cut(s) 51, 145, 381, 552, 680, 777
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 3 cut(s) 338, 468, 837
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 4 cut(s) 76, 492, 632, 667
NdeI CATATG 2 cut(s) 66, 745
NdeII GATC 4 cut(s) 106, 283, 421, 568
NlaIII CATG 9 cut(s) 44, 74, 296, 445, 510, 540, 584, 773, 931
NlaIV GGNNCC 1 cut(s) 765
NmuCI GTSAC 1 cut(s) 427
NsiI ATGCAT 1 cut(s) 72
NspI RCATGY 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 642
PceI AGGCCT 1 cut(s) 306
PfeI GAWTC 2 cut(s) 10, 82
PflFI GACNNNGTC 1 cut(s) 372
PkrI GCNGC 2 cut(s) 100, 625
PleI GAGTC 2 cut(s) 707, 788
PpsI GAGTC 2 cut(s) 707, 788
PpuMI RGGWCCY 1 cut(s) 764
PsiI TTATAA 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 764
PspFI CCCAGC 1 cut(s) 759
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 2 cut(s) 510, 764
PspPPI RGGWCCY 1 cut(s) 764
PstNI CAGNNNCTG 2 cut(s) 787, 797
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 372
RsaI GTAC 4 cut(s) 448, 542, 776, 843
RsaNI GTAC 4 cut(s) 447, 541, 775, 842
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 338, 468, 837
SatI GCNGC 2 cut(s) 99, 624
Sau3AI GATC 4 cut(s) 106, 283, 421, 568
Sau96I GGNCC 2 cut(s) 510, 764
SchI GAGTC 2 cut(s) 708, 788
SetI ASST 9 cut(s) 38, 62, 171, 373, 488, 523, 691, 769, 888
SfaNI GCATC 4 cut(s) 334, 670, 774, 905
Sfr274I CTCGAG 1 cut(s) 642
SinI GGWCC 2 cut(s) 510, 764
SlaI CTCGAG 1 cut(s) 642
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
Sse9I AATT 2 cut(s) 219, 728
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 5 cut(s) 98, 139, 236, 330, 495
SspMI CTAG 2 cut(s) 695, 952
StuI AGGCCT 1 cut(s) 306
TaaI ACNGT 4 cut(s) 31, 196, 231, 816
TaqI TCGA 1 cut(s) 643
TasI AATT 2 cut(s) 219, 728
TatI WGTACW 2 cut(s) 446, 841
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 10, 82
Tru1I TTAA 3 cut(s) 338, 468, 837
Tru9I TTAA 3 cut(s) 338, 468, 837
TscAI CASTG 2 cut(s) 633, 671
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 5 cut(s) 53, 253, 495, 520, 702
TspRI CASTG 2 cut(s) 633, 671
Tth111I GACNNNGTC 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 510, 764
XceI RCATGY 1 cut(s) 584
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XhoI CTCGAG 1 cut(s) 642
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 2 cut(s) 695, 952
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.