Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

4269741 .. 4271510

Gene Structure 1770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1060700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGTCGTGGAGTTAGCAGCGGTGGGGGACAGAGTTCTTTGAACTATCTTTTTGGGAGTGGAGAGGCTCCAAAACCGGCTGCCAACAATGCTCAAGCTGCGCCAGTTCCAGATGAGCCTGCTTCCAAGCCTGTTGCTCCTGCTCCTGCTCCTGAACCAGTTGATATCACCAAGGCGATTCCTGCTGGTATCCATAGCACCTCTACAAACAACTACATGCGTGCAGATGGCCAGAACACCGGAAACTTCATAACGGATCGACCCTCGACCAAGGTCCATGCTGCCCCGGGCGGTGGATCTTCTTTGGGTTACCTCTTTGGTGGACCGGGTGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.03

Weight (kDa)

6.71

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	21, 291
AclWI	GGATC	2 cut(s)	264, 304
AcoI	YGGCCR	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	2 cut(s)	264, 304
Ama87I	CYCGRG	1 cut(s)	286
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	4 cut(s)	18, 80, 98, 281
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	2 cut(s)	274, 323
AsuC2I	CCSGG	3 cut(s)	287, 288, 327
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	2 cut(s)	274, 323
BalI	TGGCCA	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	30, 67, 85, 268
BccI	CCATC	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	200
BcnI	CCSGG	3 cut(s)	287, 288, 327
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	4 cut(s)	19, 81, 99, 282
BlsI	GCNGC	4 cut(s)	20, 82, 100, 283
Bme1390I	CCNGG	3 cut(s)	287, 288, 327
Bme18I	GGWCC	2 cut(s)	274, 323
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	274, 323
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	287, 288, 327
BoxI	GACNNNNGTC	1 cut(s)	272
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	3 cut(s)	287, 288, 327
BsaJI	CCNNGG	4 cut(s)	171, 270, 285, 286
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	104, 158
BseDI	CCNNGG	4 cut(s)	171, 270, 285, 286
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	104, 158
BseXI	GCAGC	4 cut(s)	30, 67, 85, 268
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	4 cut(s)	77, 240, 287, 326
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	1 cut(s)	231
BsoBI	CYCGRG	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	256, 296
BspACI	CCGC	2 cut(s)	21, 291
BspANI	GGCC	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	264, 304
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	104, 158
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	4 cut(s)	171, 270, 285, 286
BssMI	GATC	2 cut(s)	256, 296
BssT1I	CCWWGG	2 cut(s)	171, 270
BstC8I	GCNNGC	2 cut(s)	120, 222
BstEII	GGTNACC	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	2 cut(s)	259, 299
BstMBI	GATC	2 cut(s)	256, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 98, 182
BstNSI	RCATGY	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	3 cut(s)	285, 286, 325
BstV1I	GCAGC	4 cut(s)	30, 67, 85, 268
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	120, 222
CfoI	GCGC	1 cut(s)	103
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	274, 323
Cfr9I	CCCGGG	1 cut(s)	286
CviAII	CATG	2 cut(s)	217, 278
CviJI	RGCY	6 cut(s)	68, 80, 98, 118, 130, 231
CviKI_1	RGCY	6 cut(s)	68, 80, 98, 118, 130, 231
DpnI	GATC	2 cut(s)	258, 298
DpnII	GATC	2 cut(s)	256, 296
EaeI	YGGCCR	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	171, 270
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	274, 323
Eco88I	CYCGRG	1 cut(s)	286
Eco91I	GGTNACC	1 cut(s)	308
EcoO65I	GGTNACC	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	171, 270
ErhI	CCWWGG	2 cut(s)	171, 270
FaeI	CATG	2 cut(s)	220, 281
FaiI	YATR	4 cut(s)	195, 218, 251, 279
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	2 cut(s)	216, 277
Fnu4HI	GCNGC	4 cut(s)	19, 81, 99, 282
Fsp4HI	GCNGC	4 cut(s)	19, 81, 99, 282
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	4 cut(s)	19, 81, 99, 282
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	4 cut(s)	77, 240, 287, 326
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	2 cut(s)	220, 281
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HinfI	GANTC	1 cut(s)	178
HpaII	CCGG	4 cut(s)	77, 240, 287, 326
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	110, 152
Hpy8I	GTNNAC	1 cut(s)	323
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 98, 182
Hsp92II	CATG	2 cut(s)	220, 281
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	2 cut(s)	256, 296
LmnI	GCTCC	4 cut(s)	73, 142, 148, 154
Lsp1109I	GCAGC	4 cut(s)	30, 67, 85, 268
MaeIII	GTNAC	2 cut(s)	308, 332
MalI	GATC	2 cut(s)	258, 298
MboI	GATC	2 cut(s)	256, 296
MboII	GAAGA	1 cut(s)	291
MflI	RGATCY	1 cut(s)	296
MlsI	TGGCCA	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	231
MnlI	CCTC	4 cut(s)	58, 211, 274, 323
Mox20I	TGGCCA	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	4 cut(s)	77, 240, 287, 326
MspR9I	CCNGG	3 cut(s)	287, 288, 327
MwoI	GCNNNNNNNGC	3 cut(s)	89, 98, 182
NciI	CCSGG	3 cut(s)	287, 288, 327
NdeII	GATC	2 cut(s)	256, 296
NlaIII	CATG	2 cut(s)	220, 281
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	4 cut(s)	20, 82, 100, 283
PshAI	GACNNNNGTC	1 cut(s)	272
PspEI	GGTNACC	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	274, 323
PsuI	RGATCY	1 cut(s)	296
SatI	GCNGC	4 cut(s)	19, 81, 99, 282
Sau3AI	GATC	2 cut(s)	256, 296
Sau96I	GGNCC	2 cut(s)	274, 323
ScrFI	CCNGG	3 cut(s)	287, 288, 327
SetI	ASST	4 cut(s)	100, 203, 276, 315
SinI	GGWCC	2 cut(s)	274, 323
SmaI	CCCGGG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	2 cut(s)	21, 291
StyD4I	CCNGG	3 cut(s)	285, 286, 325
StyI	CCWWGG	2 cut(s)	171, 270
TaqI	TCGA	2 cut(s)	259, 266
TfiI	GAWTC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	18, 80, 98, 281
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	269
TspMI	CCCGGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	274, 323
XceI	RCATGY	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.