Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

52744181 .. 52747971

Gene Structure 3791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG369300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTACAATTTTGTTTCTTTTCCTAAAATGCATTCTAAGCATCTCCTTGTAACAGAGTTATCGTTGAAGAATATGGGTCGTGGAGTCAGCAGTGGTGGGGGTCAGAGTTCCTTGGACTATCTTTTTGGGAGTGGAGAGGCTCCAAAGCCAGGCACAAACAATGTCCAAGCTCCATCAAGGGAAGTGCAGACTGTGAGTGAACCTACTCCCAAACCTACTGCTTCTCCTCCTCCCCCCAAACCTGAATCAGTAGATATCACCAAGCAGATTCCAGCTGGTATCCATAGCACTTCTTCAAATAACTACCTGCGTGCAGATGGCCAAAACACTGGAAACTTCATTACGGATCGACCCTCAACTAAGGTCCACTCTGCCCCGGGTGGTGGATCTTCTCTGGGTTACCTCTTTGGTGGACCTGGACCAGCTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.01

Weight (kDa)

8.96

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
AclWI	GGATC	2 cut(s)	354, 394
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	149, 383
AgsI	TTSAA	2 cut(s)	67, 297
AjnI	CCWGG	2 cut(s)	148, 415
AluBI	AGCT	3 cut(s)	170, 275, 425
AluI	AGCT	3 cut(s)	170, 275, 425
AlwI	GGATC	2 cut(s)	354, 394
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspS9I	GGNCC	3 cut(s)	364, 413, 419
AsuC2I	CCSGG	2 cut(s)	377, 378
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	3 cut(s)	364, 413, 419
BalI	TGGCCA	1 cut(s)	321
BccI	CCATC	2 cut(s)	181, 311
BciT130I	CCWGG	2 cut(s)	150, 417
BciVI	GTATCC	1 cut(s)	290
BcnI	CCSGG	2 cut(s)	377, 378
BfuAI	ACCTGC	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	290
Bme1390I	CCNGG	4 cut(s)	150, 377, 378, 417
Bme18I	GGWCC	3 cut(s)	364, 413, 419
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	3 cut(s)	364, 413, 419
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	4 cut(s)	150, 377, 378, 417
BmsI	GCATC	1 cut(s)	49
BpuMI	CCSGG	2 cut(s)	377, 378
BsaJI	CCNNGG	3 cut(s)	111, 375, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 383
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	150, 417
BseDI	CCNNGG	3 cut(s)	111, 375, 376
BseLI	CCNNNNNNNGG	2 cut(s)	149, 383
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	216, 219
BsgI	GTGCAG	2 cut(s)	206, 333
BshFI	GGCC	1 cut(s)	321
BsiHKCI	CYCGRG	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	2 cut(s)	149, 383
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	2 cut(s)	346, 386
BspANI	GGCC	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	354, 394
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	3 cut(s)	111, 375, 376
BssMI	GATC	2 cut(s)	346, 386
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	150, 417
Bst4CI	ACNGT	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	2 cut(s)	36, 360
BstEII	GGTNACC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	349, 389
BstMBI	GATC	2 cut(s)	346, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	2 cut(s)	150, 417
BstPI	GGTNACC	1 cut(s)	398
BstSCI	CCNGG	4 cut(s)	148, 375, 376, 415
BstX2I	RGATCY	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	386
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 327
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	312
Cfr13I	GGNCC	3 cut(s)	364, 413, 419
Cfr9I	CCCGGG	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	140, 148, 170, 275, 321, 425
CviKI_1	RGCY	6 cut(s)	140, 148, 170, 275, 321, 425
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	36, 360
DpnI	GATC	2 cut(s)	348, 388
DpnII	GATC	2 cut(s)	346, 386
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	3 cut(s)	364, 413, 419
Eco88I	CYCGRG	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	398
EcoO65I	GGTNACC	1 cut(s)	398
EcoRII	CCWGG	2 cut(s)	148, 415
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	2 cut(s)	74, 285
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	377
HinfI	GANTC	3 cut(s)	84, 245, 268
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	200, 367, 413
Hpy188I	TCNGA	1 cut(s)	105
Hpy8I	GTNNAC	3 cut(s)	200, 367, 413
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	31, 187, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	36, 360
Kzo9I	GATC	2 cut(s)	346, 386
LmnI	GCTCC	2 cut(s)	145, 175
LweI	GCATC	1 cut(s)	49
MaeIII	GTNAC	2 cut(s)	49, 398
MalI	GATC	2 cut(s)	348, 388
MboI	GATC	2 cut(s)	346, 386
MboII	GAAGA	3 cut(s)	79, 285, 381
MflI	RGATCY	1 cut(s)	386
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	130, 237, 240, 364, 413
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	275, 425
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	4 cut(s)	150, 377, 378, 417
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	150, 417
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	2 cut(s)	377, 378
NdeII	GATC	2 cut(s)	346, 386
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	245, 268
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	148, 415
PspEI	GGTNACC	1 cut(s)	398
PspGI	CCWGG	2 cut(s)	148, 415
PspN4I	GGNNCC	1 cut(s)	141
PspPI	GGNCC	3 cut(s)	364, 413, 419
PsuI	RGATCY	1 cut(s)	386
PvuII	CAGCTG	2 cut(s)	275, 425
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
Sau3AI	GATC	2 cut(s)	346, 386
Sau96I	GGNCC	3 cut(s)	364, 413, 419
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	4 cut(s)	150, 377, 378, 417
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	3 cut(s)	364, 413, 419
SmaI	CCCGGG	1 cut(s)	378
Sse9I	AATT	1 cut(s)	7
StyD4I	CCNGG	4 cut(s)	148, 375, 376, 415
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	349
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	245, 268
TscAI	CASTG	2 cut(s)	97, 334
TspDTI	ATGAA	1 cut(s)	328
TspGWI	ACGGA	1 cut(s)	359
TspMI	CCCGGG	1 cut(s)	376
TspRI	CASTG	2 cut(s)	97, 334
VpaK11BI	GGWCC	3 cut(s)	364, 413, 419
XmaI	CCCGGG	1 cut(s)	376
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.