Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

15704974 .. 15707080

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGTCGTGGAGTCAGCAGTGGTGGGGGTCAGAGTTCCTTGGACTATCTTTTTGGGAGTGGAGAGGCTCCAAAGCCAGGCACAAACAATGTCCAAGCTCCACCAAGGGAAGTGCAGACTGTGAGTGAACCTACTCCCAAACCTACTGCTTCTCCTCCTCCCCACAAACCTGAATCAGTAGATATCACCAAGAAGATTCCTGCTTGTATCCACAACACTTCTTCAAATAACTACATGCGTGCAGATGGCCAAAACACTGGAAACTTCATTACGGATCGACCCTCAACTAAGGTCCACACTGCCCCAGGTGGTGGATCTTCTATGGGTTACCTCTTTGCCTCTTTGGTGGACCTGGACCAGCTGAAAACTGAGACATGCCTTCATATCGTTGATTTTTGTGGGATGGGGAATGTTTTCATCCTTTATATAAAAAATGAAGACTTTATGGATCATGGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.31

Weight (kDa)

5.9

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	311
AclWI	GGATC	3 cut(s)	282, 322, 456
AcoI	YGGCCR	1 cut(s)	247
AfiI	CCNNNNNNNGG	2 cut(s)	77, 311
AgsI	TTSAA	1 cut(s)	225
AjnI	CCWGG	3 cut(s)	76, 304, 351
AluBI	AGCT	2 cut(s)	98, 361
AluI	AGCT	2 cut(s)	98, 361
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	3 cut(s)	282, 322, 456
AoxI	GGCC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	413
AspS9I	GGNCC	3 cut(s)	292, 349, 355
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	3 cut(s)	292, 349, 355
BalI	TGGCCA	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	444
BccI	CCATC	2 cut(s)	239, 397
BciT130I	CCWGG	3 cut(s)	78, 306, 353
BciVI	GTATCC	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	3 cut(s)	78, 306, 353
Bme18I	GGWCC	3 cut(s)	292, 349, 355
BmgT120I	GGNCC	3 cut(s)	292, 349, 355
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	3 cut(s)	78, 306, 353
BpiI	GAAGAC	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	39, 104, 304
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 311
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	3 cut(s)	78, 306, 353
BseDI	CCNNGG	3 cut(s)	39, 104, 304
BseGI	GGATG	3 cut(s)	408, 417, 462
BseLI	CCNNNNNNNGG	2 cut(s)	77, 311
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	144, 147
BsgI	GTGCAG	2 cut(s)	134, 261
BshFI	GGCC	1 cut(s)	249
BslI	CCNNNNNNNGG	2 cut(s)	77, 311
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	274, 314, 448
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	282, 322, 456
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	39, 104, 304
BssMI	GATC	3 cut(s)	274, 314, 448
BssT1I	CCWWGG	2 cut(s)	39, 104
Bst2UI	CCWGG	3 cut(s)	78, 306, 353
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	288, 369
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	408, 417, 462
BstKTI	GATC	3 cut(s)	277, 317, 451
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	3 cut(s)	274, 314, 448
BstNI	CCWGG	3 cut(s)	78, 306, 353
BstNSI	RCATGY	2 cut(s)	238, 378
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	76, 304, 351
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	314
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	249
BtsCI	GGATG	3 cut(s)	408, 417, 462
BtsI	GCAGTG	2 cut(s)	25, 297
BtsIMutI	CAGTG	3 cut(s)	25, 255, 297
Cac8I	GCNNGC	1 cut(s)	240
Cfr13I	GGNCC	3 cut(s)	292, 349, 355
CviAII	CATG	3 cut(s)	235, 375, 452
CviJI	RGCY	5 cut(s)	68, 76, 98, 249, 361
CviKI_1	RGCY	5 cut(s)	68, 76, 98, 249, 361
DdeI	CTNAG	2 cut(s)	288, 369
DpnI	GATC	3 cut(s)	276, 316, 450
DpnII	GATC	3 cut(s)	274, 314, 448
EaeI	YGGCCR	1 cut(s)	247
Eco130I	CCWWGG	2 cut(s)	39, 104
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	3 cut(s)	292, 349, 355
Eco91I	GGTNACC	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	76, 304, 351
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	39, 104
ErhI	CCWWGG	2 cut(s)	39, 104
FaeI	CATG	3 cut(s)	238, 378, 455
FaiI	YATR	8 cut(s)	236, 323, 376, 384, 426, 428, 446, 453
FatI	CATG	3 cut(s)	234, 374, 451
FokI	GGATG	2 cut(s)	404, 415
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	238, 378, 455
HinfI	GANTC	3 cut(s)	12, 173, 196
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	3 cut(s)	128, 295, 349
Hpy188I	TCNGA	1 cut(s)	33
Hpy8I	GTNNAC	3 cut(s)	128, 295, 349
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	2 cut(s)	115, 242
HpyF3I	CTNAG	2 cut(s)	288, 369
Hsp92II	CATG	3 cut(s)	238, 378, 455
Kzo9I	GATC	3 cut(s)	274, 314, 448
LmnI	GCTCC	2 cut(s)	73, 103
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	3 cut(s)	276, 316, 450
MboI	GATC	3 cut(s)	274, 314, 448
MboII	GAAGA	4 cut(s)	205, 213, 309, 449
MflI	RGATCY	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	249
MluNI	TGGCCA	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	21
MnlI	CCTC	6 cut(s)	58, 165, 168, 292, 341, 349
Mox20I	TGGCCA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	413
MscI	TGGCCA	1 cut(s)	249
Msp20I	TGGCCA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	361
MspR9I	CCNGG	3 cut(s)	78, 306, 353
MvaI	CCWGG	3 cut(s)	78, 306, 353
NdeII	GATC	3 cut(s)	274, 314, 448
NlaIII	CATG	3 cut(s)	238, 378, 455
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	2 cut(s)	238, 378
PdmI	GAANNNNTTC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	173, 196
PflMI	CCANNNNNTGG	1 cut(s)	311
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp6I	CCWGG	3 cut(s)	76, 304, 351
PspEI	GGTNACC	1 cut(s)	326
PspGI	CCWGG	3 cut(s)	76, 304, 351
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	3 cut(s)	292, 349, 355
PsuI	RGATCY	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	361
Sau3AI	GATC	3 cut(s)	274, 314, 448
Sau96I	GGNCC	3 cut(s)	292, 349, 355
SchI	GAGTC	1 cut(s)	21
ScrFI	CCNGG	3 cut(s)	78, 306, 353
SetI	ASST	9 cut(s)	100, 133, 145, 172, 294, 310, 333, 354, 363
SinI	GGWCC	3 cut(s)	292, 349, 355
StyD4I	CCNGG	3 cut(s)	76, 304, 351
StyI	CCWWGG	2 cut(s)	39, 104
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	173, 196
TscAI	CASTG	3 cut(s)	25, 262, 304
TspDTI	ATGAA	4 cut(s)	256, 371, 406, 450
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	3 cut(s)	25, 262, 304
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	3 cut(s)	292, 349, 355
XceI	RCATGY	2 cut(s)	238, 378
XmnI	GAANNNNTTC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.