Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Forward (+)

28812690 .. 28815065

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G288700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTCGTGGAGTTAGCAGTGGTGGGGGACAGAGTTCTTTGGGCTATCTTTTCGGGAGTGGGGAGGCTCCAAAACCGGCCGCAAACAACACCCAAGCTGCACCAATTCCAAACGAAGGGAGGGTTGTGACTAATGAGCCTGCTTCCAAACCTACTGCTCCTCCTCCTGCTCCTGAGCCAGTAGATATCACCAAGCAGATTCCTGCTGGCATCCACAGTACTTCTTCAAACAACTACATGCGTGCAGATGGCCAGAACACTGGAAACTTCATTACGGATCGACCCTCGACTAAGGTCCACTCTGCCCCAGGTGGTGGTTCTTCTCTGGATTACCTCTTTGGTGGACCAGGTGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

11.92

Weight (kDa)

6.71

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AciI	CCGC	1 cut(s)	81
AclWI	GGATC	1 cut(s)	285
AcoI	YGGCCR	2 cut(s)	78, 250
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	116, 314
AgsI	TTSAA	1 cut(s)	228
AjnI	CCWGG	2 cut(s)	307, 346
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	1 cut(s)	285
AoxI	GGCC	2 cut(s)	78, 250
ApeKI	GCWGC	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	295, 344
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	295, 344
BalI	TGGCCA	1 cut(s)	252
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	309, 348
BisI	GCNGC	2 cut(s)	81, 99
BlsI	GCNGC	2 cut(s)	82, 100
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	309, 348
Bme18I	GGWCC	2 cut(s)	295, 344
BmgT120I	GGNCC	2 cut(s)	295, 344
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	309, 348
BmsI	GCATC	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 314
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	179, 265
BseBI	CCWGG	2 cut(s)	309, 348
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	116, 314
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	179, 265
BseRI	GAGGAG	2 cut(s)	150, 153
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	2 cut(s)	84, 264
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 252
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	116, 314
BsmFI	GGGAC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	80, 252
Bsp143I	GATC	1 cut(s)	277
BspACI	CCGC	1 cut(s)	81
BspANI	GGCC	2 cut(s)	80, 252
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	285
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	179, 265
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	309, 348
Bst4CI	ACNGT	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	141, 208, 243
BstDEI	CTNAG	2 cut(s)	174, 291
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	1 cut(s)	280
BstMBI	GATC	1 cut(s)	277
BstMCI	CGRYCG	1 cut(s)	81
BstNI	CCWGG	2 cut(s)	309, 348
BstNSI	RCATGY	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	307, 346
BstV1I	GCAGC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	80, 252
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	25
BtsIMutI	CAGTG	2 cut(s)	25, 258
Cac8I	GCNNGC	3 cut(s)	141, 208, 243
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	295, 344
CsiI	ACCWGGT	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	1 cut(s)	238
CviJI	RGCY	7 cut(s)	45, 68, 80, 98, 139, 178, 252
CviKI_1	RGCY	7 cut(s)	45, 68, 80, 98, 139, 178, 252
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	2 cut(s)	174, 291
DpnI	GATC	1 cut(s)	279
DpnII	GATC	1 cut(s)	277
EaeI	YGGCCR	2 cut(s)	78, 250
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	295, 344
Eco52I	CGGCCG	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	307, 346
EcoRV	GATATC	1 cut(s)	187
FaeI	CATG	1 cut(s)	241
FaiI	YATR	1 cut(s)	239
FaqI	GGGAC	1 cut(s)	42
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	81, 99
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	81, 99
GluI	GCNGC	2 cut(s)	81, 99
HaeIII	GGCC	2 cut(s)	80, 252
HapII	CCGG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	241
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	298, 344
Hpy188III	TCNNGA	3 cut(s)	55, 173, 326
Hpy8I	GTNNAC	2 cut(s)	298, 344
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	2 cut(s)	101, 245
HpyF3I	CTNAG	2 cut(s)	174, 291
Hsp92II	CATG	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	277
LmnI	GCTCC	3 cut(s)	73, 163, 175
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	219
MabI	ACCWGGT	1 cut(s)	346
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	1 cut(s)	279
MboI	GATC	1 cut(s)	277
MboII	GAAGA	2 cut(s)	216, 312
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	6 cut(s)	58, 114, 171, 174, 295, 344
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	252
MspI	CCGG	1 cut(s)	77
MspR9I	CCNGG	2 cut(s)	309, 348
MvaI	CCWGG	2 cut(s)	309, 348
NdeII	GATC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	127
NspI	RCATGY	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	82, 100
PshAI	GACNNNNGTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	307, 346
PspGI	CCWGG	2 cut(s)	307, 346
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	295, 344
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SatI	GCNGC	2 cut(s)	81, 99
Sau3AI	GATC	1 cut(s)	277
Sau96I	GGNCC	2 cut(s)	295, 344
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	309, 348
SetI	ASST	6 cut(s)	100, 154, 297, 313, 336, 352
SexAI	ACCWGGT	1 cut(s)	346
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	2 cut(s)	295, 344
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	81
StyD4I	CCNGG	2 cut(s)	307, 346
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	2 cut(s)	280, 287
TasI	AATT	1 cut(s)	105
TatI	WGTACW	1 cut(s)	218
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	2 cut(s)	25, 265
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	290
TspRI	CASTG	2 cut(s)	25, 265
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	295, 344
XceI	RCATGY	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.