Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

58528708 .. 58531759

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG364100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCATTCTAAGCATCTCGTTGTAACAGAGTTATCGTTGAAGAATATGGGTCGTGGAGTCAGCAGTGGTGGGGGTCAGAGTTCCTTGGACTATCTTTTTGGGAGTGGAGAGGCTCCAAAGCCAGGCACAAACAATGTCCAAGCTCCACCAAGGGAAGTGCCGACTGTGAGTGAACCTACTCCCAAACCTACTGCTTCTCCTCCTCCCCCCAAACCTGAATCAGTAGATATCACCAAGCAGATTCCAGCTGGTATCCATAGCACTTCTTCAAATAACTACCTGCGTGCAGATGGCCAAAACACTGGAAACTTCATTACGGATCGGCCCTCTACTAAGGTCCACTCTGCCCCAGGTGGTGGATCTTCTCTGGGTTACCTCTTTGGTGGACCTGGACCAGCTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

13.86

Weight (kDa)

8.06

Isoelectric Point (pI)

45.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccB7I	CCANNNNNTGG	1 cut(s)	356
AclWI	GGATC	2 cut(s)	327, 367
AcoI	YGGCCR	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	122, 356
AgsI	TTSAA	2 cut(s)	40, 270
AjnI	CCWGG	3 cut(s)	121, 349, 388
AluBI	AGCT	3 cut(s)	143, 248, 398
AluI	AGCT	3 cut(s)	143, 248, 398
AlwI	GGATC	2 cut(s)	327, 367
AoxI	GGCC	2 cut(s)	292, 323
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	4 cut(s)	324, 337, 386, 392
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	3 cut(s)	337, 386, 392
BalI	TGGCCA	1 cut(s)	294
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	123, 351, 390
BciVI	GTATCC	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	123, 351, 390
Bme18I	GGWCC	3 cut(s)	337, 386, 392
BmgT120I	GGNCC	4 cut(s)	324, 337, 386, 392
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	123, 351, 390
BmsI	GCATC	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	84, 149, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 356
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	123, 351, 390
BseDI	CCNNGG	3 cut(s)	84, 149, 349
BseLI	CCNNNNNNNGG	2 cut(s)	122, 356
BseNI	ACTGG	1 cut(s)	307
BseRI	GAGGAG	2 cut(s)	189, 192
BsgI	GTGCAG	1 cut(s)	306
BshFI	GGCC	2 cut(s)	294, 325
BslI	CCNNNNNNNGG	2 cut(s)	122, 356
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	2 cut(s)	294, 325
Bsp143I	GATC	2 cut(s)	319, 359
BspANI	GGCC	2 cut(s)	294, 325
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	327, 367
BsrI	ACTGG	1 cut(s)	307
BssECI	CCNNGG	3 cut(s)	84, 149, 349
BssMI	GATC	2 cut(s)	319, 359
BssT1I	CCWWGG	2 cut(s)	84, 149
Bst2UI	CCWGG	3 cut(s)	123, 351, 390
Bst4CI	ACNGT	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	9, 333
BstEII	GGTNACC	1 cut(s)	371
BstKTI	GATC	2 cut(s)	322, 362
BstMBI	GATC	2 cut(s)	319, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	3 cut(s)	123, 351, 390
BstPI	GGTNACC	1 cut(s)	371
BstSCI	CCNGG	3 cut(s)	121, 349, 388
BstX2I	RGATCY	1 cut(s)	359
BstXI	CCANNNNNNTGG	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	294, 325
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 300
BveI	ACCTGC	1 cut(s)	288
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	324, 337, 386, 392
CviJI	RGCY	7 cut(s)	113, 121, 143, 248, 294, 325, 398
CviKI_1	RGCY	7 cut(s)	113, 121, 143, 248, 294, 325, 398
DdeI	CTNAG	2 cut(s)	9, 333
DpnI	GATC	2 cut(s)	321, 361
DpnII	GATC	2 cut(s)	319, 359
EaeI	YGGCCR	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	84, 149
Eco32I	GATATC	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	337, 386, 392
Eco91I	GGTNACC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	371
EcoRII	CCWGG	3 cut(s)	121, 349, 388
EcoRV	GATATC	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	84, 149
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	84, 149
FaiI	YATR	2 cut(s)	47, 258
HaeIII	GGCC	2 cut(s)	294, 325
HinfI	GANTC	3 cut(s)	57, 218, 241
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	173, 340, 386
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	3 cut(s)	173, 340, 386
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	4, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	2 cut(s)	9, 333
Kzo9I	GATC	2 cut(s)	319, 359
LmnI	GCTCC	2 cut(s)	118, 148
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	22, 371
MalI	GATC	2 cut(s)	321, 361
MboI	GATC	2 cut(s)	319, 359
MboII	GAAGA	3 cut(s)	52, 258, 354
MflI	RGATCY	1 cut(s)	359
MlsI	TGGCCA	1 cut(s)	294
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	5 cut(s)	103, 210, 213, 337, 386
Mox20I	TGGCCA	1 cut(s)	294
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	294
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	248, 398
MspR9I	CCNGG	3 cut(s)	123, 351, 390
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	3 cut(s)	123, 351, 390
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	319, 359
NlaIV	GGNNCC	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	2 cut(s)	218, 241
PflMI	CCANNNNNTGG	1 cut(s)	356
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	3 cut(s)	121, 349, 388
PspEI	GGTNACC	1 cut(s)	371
PspGI	CCWGG	3 cut(s)	121, 349, 388
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	4 cut(s)	324, 337, 386, 392
PsuI	RGATCY	1 cut(s)	359
PvuII	CAGCTG	2 cut(s)	248, 398
Sau3AI	GATC	2 cut(s)	319, 359
Sau96I	GGNCC	4 cut(s)	324, 337, 386, 392
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	123, 351, 390
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	3 cut(s)	337, 386, 392
StyD4I	CCNGG	3 cut(s)	121, 349, 388
StyI	CCWWGG	2 cut(s)	84, 149
TaaI	ACNGT	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	218, 241
TscAI	CASTG	2 cut(s)	70, 307
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	70, 307
Van91I	CCANNNNNTGG	1 cut(s)	356
VpaK11BI	GGWCC	3 cut(s)	337, 386, 392
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.