Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

4310004 .. 4310922

Gene Structure 919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1061400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGCAGACTCTTAAGATTTTTGTTTTTTCCTTCTCGTTCGGGTTTCTTGTGAGTGGTTCGATTTATAAAATGGATCAATGGTTTAGATCATGTTATGGTGTTTTGATTTCAAAGTATTTTCGTGACACTGAGTCAAGTAGTGACAGAGTTATTGTGATAATTGTTCCTGGTTTATCTGTGAAGAAGTTACAGAACATGGGTCGTGGAGTTAGCAGCGGTGGGGGACAGAGTTCTTTGAACTATCTTTTTGGGAGTGGAGAGGCTCCAAAACCGGCTGCCAACAATGCTCAAGCTGCGCCAGTTCCAGATGAGCCTGCTTCCAAGCCTGTTGCTCCTGCTCCTGCTCCTGAACCAGTTGATATCACCAAGGCGATTCCTGCTGCTGGTATCCATAGCACCTCTACAAACAACTACATGCGTGCAGATGGCCAGAACACCGGAAACTTCATAACGGATCGACCCTCGACCAAGGTCCATGCTGCCCCGGGCGGTGGATCTTCTTTGGGTTACCTCTTTGGTGGACCGGGTGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

18.69

Weight (kDa)

9.27

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
AciI	CCGC	2 cut(s)	219, 492
AclWI	GGATC	3 cut(s)	84, 465, 505
AcoI	YGGCCR	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	386, 494
AflII	CTTAAG	1 cut(s)	14
AgsI	TTSAA	2 cut(s)	114, 241
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
AlwI	GGATC	3 cut(s)	84, 465, 505
Ama87I	CYCGRG	1 cut(s)	487
AoxI	GGCC	1 cut(s)	430
ApeKI	GCWGC	5 cut(s)	216, 278, 296, 383, 482
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	475, 524
AsuC2I	CCSGG	3 cut(s)	488, 489, 528
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	487
AvaII	GGWCC	2 cut(s)	475, 524
BalI	TGGCCA	1 cut(s)	432
BbvI	GCAGC	5 cut(s)	228, 265, 283, 370, 469
BccI	CCATC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	171
BciVI	GTATCC	1 cut(s)	401
BcnI	CCSGG	3 cut(s)	488, 489, 528
BfrI	CTTAAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	401
BisI	GCNGC	5 cut(s)	217, 279, 297, 384, 483
BlsI	GCNGC	5 cut(s)	218, 280, 298, 385, 484
Bme1390I	CCNGG	4 cut(s)	171, 488, 489, 528
Bme18I	GGWCC	2 cut(s)	475, 524
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	475, 524
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	4 cut(s)	171, 488, 489, 528
BoxI	GACNNNNGTC	1 cut(s)	473
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	3 cut(s)	488, 489, 528
BsaJI	CCNNGG	4 cut(s)	369, 471, 486, 487
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 494
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	2 cut(s)	302, 356
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	369, 471, 486, 487
BseLI	CCNNNNNNNGG	2 cut(s)	386, 494
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	302, 356
BseXI	GCAGC	5 cut(s)	228, 265, 283, 370, 469
BsgI	GTGCAG	2 cut(s)	26, 444
BshFI	GGCC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	487
BsiSI	CCGG	4 cut(s)	275, 441, 488, 527
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	386, 494
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	432
BsoBI	CYCGRG	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	76, 89, 457, 497
BspACI	CCGC	2 cut(s)	219, 492
BspANI	GGCC	1 cut(s)	432
BspCNI	CTCAG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	84, 465, 505
BspTI	CTTAAG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	302, 356
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	4 cut(s)	369, 471, 486, 487
BssMI	GATC	4 cut(s)	76, 89, 457, 497
BssT1I	CCWWGG	2 cut(s)	369, 471
Bst2UI	CCWGG	1 cut(s)	171
BstAFI	CTTAAG	1 cut(s)	14
BstC8I	GCNNGC	2 cut(s)	318, 423
BstDEI	CTNAG	1 cut(s)	132
BstEII	GGTNACC	1 cut(s)	509
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	4 cut(s)	79, 92, 460, 500
BstMBI	GATC	4 cut(s)	76, 89, 457, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 296, 380
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	421
BstPAI	GACNNNNGTC	1 cut(s)	473
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	4 cut(s)	169, 486, 487, 526
BstV1I	GCAGC	5 cut(s)	228, 265, 283, 370, 469
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuI	GTATCC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	432
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	318, 423
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	2 cut(s)	475, 524
Cfr9I	CCCGGG	1 cut(s)	487
CviAII	CATG	4 cut(s)	93, 199, 418, 479
CviJI	RGCY	6 cut(s)	266, 278, 296, 316, 328, 432
CviKI_1	RGCY	6 cut(s)	266, 278, 296, 316, 328, 432
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	4 cut(s)	78, 91, 459, 499
DpnII	GATC	4 cut(s)	76, 89, 457, 497
DriI	GACNNNNNGTC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	430
Eam1105I	GACNNNNNGTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	369, 471
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	2 cut(s)	475, 524
Eco88I	CYCGRG	1 cut(s)	487
Eco91I	GGTNACC	1 cut(s)	509
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	369, 471
ErhI	CCWWGG	2 cut(s)	369, 471
FaeI	CATG	4 cut(s)	96, 202, 421, 482
FaiI	YATR	8 cut(s)	69, 94, 99, 200, 396, 419, 452, 480
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	4 cut(s)	92, 198, 417, 478
Fnu4HI	GCNGC	5 cut(s)	217, 279, 297, 384, 483
Fsp4HI	GCNGC	5 cut(s)	217, 279, 297, 384, 483
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	5 cut(s)	217, 279, 297, 384, 483
HaeIII	GGCC	1 cut(s)	432
HapII	CCGG	4 cut(s)	275, 441, 488, 527
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	96, 202, 421, 482
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	3 cut(s)	10, 134, 376
HpaII	CCGG	4 cut(s)	275, 441, 488, 527
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188III	TCNNGA	3 cut(s)	125, 308, 350
Hpy8I	GTNNAC	1 cut(s)	524
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	7, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 296, 380
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	96, 202, 421, 482
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	4 cut(s)	76, 89, 457, 497
LmnI	GCTCC	4 cut(s)	271, 340, 346, 352
Lsp1109I	GCAGC	5 cut(s)	228, 265, 283, 370, 469
MaeIII	GTNAC	5 cut(s)	125, 143, 189, 509, 533
MalI	GATC	4 cut(s)	78, 91, 459, 499
MboI	GATC	4 cut(s)	76, 89, 457, 497
MboII	GAAGA	2 cut(s)	196, 492
MflI	RGATCY	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	432
MluCI	AATT	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	432
MlyI	GAGTC	2 cut(s)	4, 143
MnlI	CCTC	4 cut(s)	256, 412, 475, 524
Mox20I	TGGCCA	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	432
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	14
MspI	CCGG	4 cut(s)	275, 441, 488, 527
MspR9I	CCNGG	4 cut(s)	171, 488, 489, 528
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	287, 296, 380
NciI	CCSGG	3 cut(s)	488, 489, 528
NdeII	GATC	4 cut(s)	76, 89, 457, 497
NlaIII	CATG	4 cut(s)	96, 202, 421, 482
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	125, 143
NspI	RCATGY	1 cut(s)	421
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	218, 280, 298, 385, 484
PleI	GAGTC	2 cut(s)	4, 142
PpsI	GAGTC	2 cut(s)	4, 142
PshAI	GACNNNNGTC	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	169
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	2 cut(s)	475, 524
PsuI	RGATCY	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	217, 279, 297, 384, 483
Sau3AI	GATC	4 cut(s)	76, 89, 457, 497
Sau96I	GGNCC	2 cut(s)	475, 524
SchI	GAGTC	2 cut(s)	4, 143
ScrFI	CCNGG	4 cut(s)	171, 488, 489, 528
SetI	ASST	4 cut(s)	298, 404, 477, 516
SinI	GGWCC	2 cut(s)	475, 524
SmaI	CCCGGG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	14, 291
SmoI	CTYRAG	2 cut(s)	14, 291
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	219, 492
StyD4I	CCNGG	4 cut(s)	169, 486, 487, 526
StyI	CCWWGG	2 cut(s)	369, 471
TaqI	TCGA	3 cut(s)	62, 460, 467
TasI	AATT	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	125, 143
TseI	GCWGC	5 cut(s)	216, 278, 296, 383, 482
Tsp45I	GTSAC	2 cut(s)	125, 143
TspDTI	ATGAA	1 cut(s)	439
TspGWI	ACGGA	1 cut(s)	470
TspMI	CCCGGG	1 cut(s)	487
TspRI	CASTG	1 cut(s)	136
Vha464I	CTTAAG	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	475, 524
XceI	RCATGY	1 cut(s)	421
XmaI	CCCGGG	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.