Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

48297487 .. 48299334

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0306900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCTATCCTTAACTCGGACCAAGACGTTAAGATATACTTTGTCTGTGGCGTTTTCAGATCACTTTCAGATTCACTGCCAACTCATTGCAGTCTAAGTATAGAGTCGTTTTCCTTGCTAACTGAATATCATGGAGTCGATGGATATGAATCAAAAGAGTTTGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTTCGAAGCAAAAGTGCTTTCATTGGGCGATGCACGATGTAGGTTTTGATAAACTAATCCCTCTTGAAGAATTTAGGGATGCCTCTAATGGATATCTCGTTGTTGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAGAGAAAGAAAAACAGGGCAAGCAGAGTGTATGTCAAGGGTAAAGAGCCCTTGTATGTACAAGCATGTTTGGGAGATTCAAAATTATTCTATGTTAAACGCTCCATGCCACCAATCAGAACCATTCAATGTTGAAGGCCAAGATTGGATTATAGTACTCTATCCCGTGGGAAATCGCGAGGGGAAAGATTCTCATCTTTCTCTATACTTGGGATTGGCTGATAAACAAACAACTCCTACTGTCACTAAAGTATATGCAGAGTTTTCCTTACGCTTGGTAAATCAAAACCGTGCCAGCCATCAATCTGGTCCACATAAGATATGTTTCATCACTGCCGGTGAGCATTATGGTTGGAGTAAATTCATTCCACAGGCTGGTTTACGTCGTTTTTTGAAGAACGATACTTTCTCAGTGGAAGCAGAGATCACTGTTCTTGGGATTGCTAAAGAACCCTCAGAGGCAGAGGACATTGTCCATACAACTGGGGAGGAGGGTTCATGCAGGTTCCCCTTCAATTCGTCTTTACTTCTCAAGTCCTTGTCCACCTTCGTCATTGTGCTCAATCTACTTCGGTTGGCCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

37.61

Weight (kDa)

6.19

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	31 - 89	1e-09	MATH domain
MATH_2	PF22486	92 - 135	3.4e-06	MATH domain
MATH_2	PF22486	159 - 280	7.1e-27	MATH domain
MATH	PF00917	165 - 282	1.7e-10	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	906
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccII	CGCG	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	990
AcsI	RAATTY	2 cut(s)	344, 773
AfaI	GTAC	4 cut(s)	197, 254, 473, 570
AfiI	CCNNNNNNNGG	2 cut(s)	16, 788
AgsI	TTSAA	8 cut(s)	164, 266, 341, 494, 541, 548, 808, 928
AjnI	CCWGG	1 cut(s)	992
AluBI	AGCT	1 cut(s)	398
AluI	AGCT	1 cut(s)	398
Alw21I	GWGCWC	1 cut(s)	975
AoxI	GGCC	2 cut(s)	550, 990
ApoI	RAATTY	2 cut(s)	344, 773
AspS9I	GGNCC	2 cut(s)	19, 722
AsuHPI	GGTGA	1 cut(s)	764
AsuII	TTCGAA	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	19, 722
BalI	TGGCCA	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	975
BbvCI	CCTCAGC	1 cut(s)	399
BccI	CCATC	2 cut(s)	134, 720
BciT130I	CCWGG	1 cut(s)	994
BciVI	GTATCC	1 cut(s)	167
BfuAI	ACCTGC	1 cut(s)	906
BfuI	GTATCC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	994
Bme18I	GGWCC	2 cut(s)	19, 722
BmgT120I	GGNCC	2 cut(s)	19, 722
BmiI	GGNNCC	1 cut(s)	920
BmrFI	CCNGG	1 cut(s)	994
BmrI	ACTGGG	1 cut(s)	906
BmsI	GCATC	3 cut(s)	259, 294, 343
BmuI	ACTGGG	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	929
BsaBI	GATNNNNATC	2 cut(s)	148, 606
BsaJI	CCNNGG	1 cut(s)	579
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 788
Bse118I	RCCGGY	1 cut(s)	749
Bse1I	ACTGG	2 cut(s)	192, 901
Bse3DI	GCAATG	1 cut(s)	85
Bse8I	GATNNNNATC	2 cut(s)	148, 606
BseBI	CCWGG	1 cut(s)	994
BseDI	CCNNGG	1 cut(s)	579
BseGI	GGATG	1 cut(s)	358
BseJI	GATNNNNATC	2 cut(s)	148, 606
BseLI	CCNNNNNNNGG	2 cut(s)	16, 788
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	390, 837, 882
BseNI	ACTGG	2 cut(s)	192, 901
BseRI	GAGGAG	1 cut(s)	917
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	2 cut(s)	552, 992
BsiHKAI	GWGCWC	1 cut(s)	975
BsiSI	CCGG	2 cut(s)	168, 750
BslI	CCNNNNNNNGG	2 cut(s)	16, 788
BsnI	GGCC	2 cut(s)	552, 992
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	2 cut(s)	464, 975
Bsp1407I	TGTACA	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	59, 837
Bsp68I	TCGCGA	1 cut(s)	591
BspANI	GGCC	2 cut(s)	552, 992
BspCNI	CTCAG	3 cut(s)	391, 836, 881
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	1 cut(s)	920
BspMI	ACCTGC	1 cut(s)	906
BspT104I	TTCGAA	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	471
BsrI	ACTGG	2 cut(s)	192, 901
BssAI	RCCGGY	1 cut(s)	749
BssECI	CCNNGG	1 cut(s)	579
BssMI	GATC	2 cut(s)	59, 837
Bst2UI	CCWGG	1 cut(s)	994
Bst4CI	ACNGT	3 cut(s)	655, 704, 844
BstAUI	TGTACA	1 cut(s)	471
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	435, 709
BstDEI	CTNAG	4 cut(s)	95, 399, 823, 868
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	2 cut(s)	62, 840
BstMBI	GATC	2 cut(s)	59, 837
BstNI	CCWGG	1 cut(s)	994
BstNSI	RCATGY	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	992
BstUI	CGCG	1 cut(s)	591
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	719, 896
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	552, 992
BtgI	CCRYGG	1 cut(s)	579
BtgZI	GCGATG	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	2 cut(s)	74, 744
BtsIMutI	CAGTG	4 cut(s)	74, 744, 831, 840
BtuMI	TCGCGA	1 cut(s)	591
BveI	ACCTGC	1 cut(s)	906
Cac8I	GCNNGC	2 cut(s)	435, 709
Cfr10I	RCCGGY	1 cut(s)	749
Cfr13I	GGNCC	2 cut(s)	19, 722
Csp6I	GTAC	4 cut(s)	196, 253, 472, 569
CviAII	CATG	4 cut(s)	131, 479, 519, 912
CviJI	RGCY	9 cut(s)	5, 167, 398, 462, 552, 632, 711, 788, 992
CviKI_1	RGCY	9 cut(s)	5, 167, 398, 462, 552, 632, 711, 788, 992
CviQI	GTAC	4 cut(s)	196, 253, 472, 569
DdeI	CTNAG	4 cut(s)	95, 399, 823, 868
DpnI	GATC	2 cut(s)	61, 839
DpnII	GATC	2 cut(s)	59, 837
EaeI	YGGCCR	1 cut(s)	990
Eco24I	GRGCYC	1 cut(s)	464
Eco32I	GATATC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	19, 722
EcoRII	CCWGG	1 cut(s)	992
EcoRV	GATATC	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	464
FaeI	CATG	4 cut(s)	134, 482, 522, 915
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	4 cut(s)	130, 478, 518, 911
FauNDI	CATATG	1 cut(s)	179
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	464
HaeIII	GGCC	2 cut(s)	552, 992
HapII	CCGG	2 cut(s)	168, 750
Hin1II	CATG	4 cut(s)	134, 482, 522, 915
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	6 cut(s)	71, 104, 135, 149, 490, 602
HpaII	CCGG	2 cut(s)	168, 750
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	4 cut(s)	379, 725, 794, 957
Hpy188I	TCNGA	5 cut(s)	19, 59, 70, 532, 871
Hpy188III	TCNNGA	3 cut(s)	263, 338, 590
Hpy8I	GTNNAC	4 cut(s)	379, 725, 794, 957
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	3 cut(s)	542, 934, 970
HpyCH4III	ACNGT	3 cut(s)	655, 704, 844
HpyCH4IV	ACGT	2 cut(s)	27, 796
HpyCH4V	TGCA	5 cut(s)	90, 307, 414, 671, 915
HpyF3I	CTNAG	4 cut(s)	95, 399, 823, 868
HpySE526I	ACGT	2 cut(s)	27, 796
Hsp92II	CATG	4 cut(s)	134, 482, 522, 915
Kzo9I	GATC	2 cut(s)	59, 837
LmnI	GCTCC	2 cut(s)	395, 520
LweI	GCATC	3 cut(s)	259, 294, 343
MaeII	ACGT	2 cut(s)	27, 796
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	2 cut(s)	61, 839
MboI	GATC	2 cut(s)	59, 837
MboII	GAAGA	6 cut(s)	226, 229, 239, 278, 353, 820
MhlI	GDGCHC	2 cut(s)	464, 975
MlsI	TGGCCA	1 cut(s)	992
MluCI	AATT	4 cut(s)	344, 496, 773, 928
MluNI	TGGCCA	1 cut(s)	992
MlyI	GAGTC	2 cut(s)	113, 144
MmeI	TCCRAC	1 cut(s)	746
Mox20I	TGGCCA	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	992
MseI	TTAA	3 cut(s)	12, 30, 509
Msp20I	TGGCCA	1 cut(s)	992
MspI	CCGG	2 cut(s)	168, 750
MspR9I	CCNGG	1 cut(s)	994
MvaI	CCWGG	1 cut(s)	994
MvnI	CGCG	1 cut(s)	591
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	2 cut(s)	59, 837
NlaIII	CATG	4 cut(s)	134, 482, 522, 915
NlaIV	GGNNCC	1 cut(s)	920
NmuCI	GTSAC	1 cut(s)	655
NruI	TCGCGA	1 cut(s)	591
NspI	RCATGY	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	278
PfeI	GAWTC	4 cut(s)	71, 149, 490, 602
PflFI	GACNNNGTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	788
PleI	GAGTC	2 cut(s)	112, 143
PpsI	GAGTC	2 cut(s)	112, 143
Psp6I	CCWGG	1 cut(s)	992
PspGI	CCWGG	1 cut(s)	992
PspN4I	GGNNCC	1 cut(s)	920
PspPI	GGNCC	2 cut(s)	19, 722
PsyI	GACNNNGTC	1 cut(s)	884
RruI	TCGCGA	1 cut(s)	591
RsaI	GTAC	4 cut(s)	197, 254, 473, 570
RsaNI	GTAC	4 cut(s)	196, 253, 472, 569
SaqAI	TTAA	3 cut(s)	12, 30, 509
Sau3AI	GATC	2 cut(s)	59, 837
Sau96I	GGNCC	2 cut(s)	19, 722
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	2 cut(s)	113, 144
ScrFI	CCNGG	1 cut(s)	994
SduI	GDGCHC	2 cut(s)	464, 975
SetI	ASST	8 cut(s)	30, 319, 400, 405, 799, 920, 962, 998
SfaNI	GCATC	3 cut(s)	259, 294, 343
SfuI	TTCGAA	1 cut(s)	278
SinI	GGWCC	2 cut(s)	19, 722
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
Sse9I	AATT	4 cut(s)	344, 496, 773, 928
StyD4I	CCNGG	1 cut(s)	992
TaaI	ACNGT	3 cut(s)	655, 704, 844
TaiI	ACGT	2 cut(s)	30, 799
TaqI	TCGA	2 cut(s)	138, 278
TasI	AATT	4 cut(s)	344, 496, 773, 928
TatI	WGTACW	3 cut(s)	252, 471, 568
TfiI	GAWTC	4 cut(s)	71, 149, 490, 602
Tru1I	TTAA	3 cut(s)	12, 30, 509
Tru9I	TTAA	3 cut(s)	12, 30, 509
TscAI	CASTG	4 cut(s)	81, 751, 831, 847
TseFI	GTSAC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	5 cut(s)	162, 284, 730, 766, 900
TspRI	CASTG	4 cut(s)	81, 751, 831, 847
Tth111I	GACNNNGTC	1 cut(s)	884
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	19, 722
XapI	RAATTY	2 cut(s)	344, 773
XceI	RCATGY	1 cut(s)	482
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.