Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

59672608 .. 59674093

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATTCTAAGCATCTCCTTCTAACAGAGTTATCGTTGAAGAATATGGGTCGTGGAGTCAGCAGTGGTGGCGGTCAGAGTTCCTTGGACTATCTTTTTGGGAGTGGAGAGGCTCCAAAGCCAGGAACAAACAATGTCCAAGCTCCACCAAGGGAAGTGCAGACTATTCCAGCTGGTATCCATAGCACTTCTTCAAATAACTACTTGCGTGCAGATGGCCAAAACACTGGAAACTTCATTACGGATCGACCCTCAACTAAGGTCCACTCTGCCCCAGGTGGTGGATCTTCTCTGGGTTACCTCTTTGGTGGACCTGGACCAGCTGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.28

Weight (kDa)

6.82

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	281
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	2 cut(s)	252, 292
AcoI	YGGCCR	1 cut(s)	217
AfiI	CCNNNNNNNGG	2 cut(s)	122, 281
AgsI	TTSAA	2 cut(s)	40, 195
AjnI	CCWGG	3 cut(s)	121, 274, 313
AluBI	AGCT	3 cut(s)	143, 173, 323
AluI	AGCT	3 cut(s)	143, 173, 323
AlwI	GGATC	2 cut(s)	252, 292
AoxI	GGCC	1 cut(s)	217
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	3 cut(s)	262, 311, 317
AvaII	GGWCC	3 cut(s)	262, 311, 317
BalI	TGGCCA	1 cut(s)	219
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	3 cut(s)	123, 276, 315
BciVI	GTATCC	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	123, 276, 315
Bme18I	GGWCC	3 cut(s)	262, 311, 317
BmgT120I	GGNCC	3 cut(s)	262, 311, 317
BmiI	GGNNCC	1 cut(s)	114
BmrFI	CCNGG	3 cut(s)	123, 276, 315
BmsI	GCATC	1 cut(s)	22
BsaJI	CCNNGG	3 cut(s)	84, 149, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 281
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	3 cut(s)	123, 276, 315
BseDI	CCNNGG	3 cut(s)	84, 149, 274
BseLI	CCNNNNNNNGG	2 cut(s)	122, 281
BseNI	ACTGG	1 cut(s)	232
BsgI	GTGCAG	2 cut(s)	179, 231
BshFI	GGCC	1 cut(s)	219
BslI	CCNNNNNNNGG	2 cut(s)	122, 281
BsnI	GGCC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	244, 284
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	114
BspPI	GGATC	2 cut(s)	252, 292
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	84, 149, 274
BssMI	GATC	2 cut(s)	244, 284
BssT1I	CCWWGG	2 cut(s)	84, 149
Bst2UI	CCWGG	3 cut(s)	123, 276, 315
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	9, 258
BstEII	GGTNACC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	247, 287
BstMBI	GATC	2 cut(s)	244, 284
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	3 cut(s)	123, 276, 315
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	121, 274, 313
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstYI	RGATCY	1 cut(s)	284
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	70
BtsIMutI	CAGTG	2 cut(s)	70, 225
Cac8I	GCNNGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	262, 311, 317
CviJI	RGCY	6 cut(s)	113, 121, 143, 173, 219, 323
CviKI_1	RGCY	6 cut(s)	113, 121, 143, 173, 219, 323
DdeI	CTNAG	2 cut(s)	9, 258
DpnI	GATC	2 cut(s)	246, 286
DpnII	GATC	2 cut(s)	244, 284
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	84, 149
Eco47I	GGWCC	3 cut(s)	262, 311, 317
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	121, 274, 313
EcoT14I	CCWWGG	2 cut(s)	84, 149
ErhI	CCWWGG	2 cut(s)	84, 149
FaiI	YATR	2 cut(s)	47, 183
HaeIII	GGCC	1 cut(s)	219
HinfI	GANTC	2 cut(s)	5, 57
Hpy166II	GTNNAC	2 cut(s)	265, 311
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	2 cut(s)	265, 311
HpyAV	CCTTC	1 cut(s)	29
HpyCH4V	TGCA	2 cut(s)	160, 212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	2 cut(s)	9, 258
Kzo9I	GATC	2 cut(s)	244, 284
LmnI	GCTCC	2 cut(s)	118, 148
LweI	GCATC	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	246, 286
MboI	GATC	2 cut(s)	244, 284
MboII	GAAGA	3 cut(s)	52, 183, 279
MflI	RGATCY	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	219
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	103, 262, 311
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	173, 323
MspR9I	CCNGG	3 cut(s)	123, 276, 315
MvaI	CCWGG	3 cut(s)	123, 276, 315
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	244, 284
NlaIV	GGNNCC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	5
PflMI	CCANNNNNTGG	1 cut(s)	281
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	3 cut(s)	121, 274, 313
PspEI	GGTNACC	1 cut(s)	296
PspGI	CCWGG	3 cut(s)	121, 274, 313
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	3 cut(s)	262, 311, 317
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	2 cut(s)	173, 323
Sau3AI	GATC	2 cut(s)	244, 284
Sau96I	GGNCC	3 cut(s)	262, 311, 317
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	123, 276, 315
SetI	ASST	7 cut(s)	145, 175, 264, 280, 303, 316, 325
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	3 cut(s)	262, 311, 317
SsiI	CCGC	1 cut(s)	72
StyD4I	CCNGG	3 cut(s)	121, 274, 313
StyI	CCWWGG	2 cut(s)	84, 149
TaqI	TCGA	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	5
TscAI	CASTG	2 cut(s)	70, 232
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	70, 232
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	262, 311, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.