Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

63647566 .. 63649501

Gene Structure 1936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG383400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTACAATTTTGTTTCTTTTCCTAAAATGCATTCTAAGCATCTCCTTGTAACAGAGTTATCGTTGAAGAATATGGGTCGTGGAGTCAGCAGTGGTGGGGGTCAGAGTTCCTTGGACTATCTTTTTGGGAGTGGAGAGGCTCCAAAGCCAGGCACAAACAATGTCCAAGCTCCATCAAGGGAAGTGCAGACTGTGAGTGAACCTACTCCCAAACCTACTGCTTCTCCTCCTCCCCCCAAACCTGAATCAGTAGATATCACCAAGCAGATTCCAGCTGGTATCCATAGCACTTCTTCAAATAACTACCTGCGTGCAGATGGCCAAAACACTGGAAACTTCATTACGGCTCGCTCTCCCTCCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.82

Weight (kDa)

9.4

Isoelectric Point (pI)

54.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	319
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	67, 297
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	2 cut(s)	170, 275
AluI	AGCT	2 cut(s)	170, 275
AoxI	GGCC	1 cut(s)	319
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsuHPI	GGTGA	1 cut(s)	250
BalI	TGGCCA	1 cut(s)	321
BccI	CCATC	2 cut(s)	181, 311
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	290
Bme1390I	CCNGG	1 cut(s)	150
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseNI	ACTGG	1 cut(s)	334
BseRI	GAGGAG	2 cut(s)	216, 219
BsgI	GTGCAG	2 cut(s)	206, 333
BshFI	GGCC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	321
Bsp1407I	TGTACA	1 cut(s)	3
BspANI	GGCC	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	312, 349
BstDEI	CTNAG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	97
BtsIMutI	CAGTG	2 cut(s)	97, 327
BveI	ACCTGC	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	312, 349
Csp6I	GTAC	1 cut(s)	4
CviJI	RGCY	6 cut(s)	140, 148, 170, 275, 321, 347
CviKI_1	RGCY	6 cut(s)	140, 148, 170, 275, 321, 347
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	111
FaiI	YATR	2 cut(s)	74, 285
FspBI	CTAG	1 cut(s)	364
HaeIII	GGCC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	84, 245, 268
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	31, 187, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	145, 175
LpnPI	CCDG	7 cut(s)	135, 162, 255, 261, 285, 315, 320
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	79, 285
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	3 cut(s)	130, 237, 240
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	321
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	245, 268
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	93
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	6 cut(s)	172, 205, 217, 244, 277, 309
SfaNI	GCATC	1 cut(s)	49
Sse9I	AATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	364
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	193
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	2 cut(s)	245, 268
TscAI	CASTG	2 cut(s)	97, 334
TspDTI	ATGAA	1 cut(s)	328
TspRI	CASTG	2 cut(s)	97, 334
XspI	CTAG	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.