Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0013858

Physical Location & Seq

Genomic Coordinates Reverse (-)

3405096 .. 3405846

Gene Structure 751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTCGCGGAGTTAGCAGCGGTGGGGGTCAGAGTTCTTTGAACTATCTTTTTGGGAGTGGAGAGGCGCCAAAACCGGCTGCCAACAATGCTCAAGCTGCGCCAGTTCCAAATGAAGGGAGGGCTGTGAGCAATGAGCCTGCTTCCAAGCCTACTGCTCCTGCTCCTCCTCCTGAACCAGTTGATATCACCAAGGCTATTCCTGCTGGTATCCATAGCACCTCTACAAACAACTACATGCGTGCAGATGGCCAGAACACCGGAAACTTCATTACTGACCGACCCTCGACCAAGGTCCATGCTGCCCCAGGTGGTGGATCTTCTCTGGGTTACCTCTTCGGTGGACCAGGTGGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005856 GO:0005874 GO:0005876 GO:0005881 GO:0005938 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009524 GO:0009574 GO:0009628 GO:0009651 GO:0009653 GO:0009826 GO:0009987 GO:0010005 GO:0015630 GO:0016043 GO:0016049 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0033554 GO:0040007 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051211 GO:0051716 GO:0055028 GO:0060560 GO:0071214 GO:0071470 GO:0071472 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

11.77

Weight (kDa)

8.11

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26355
fragaria_vesca	FvH4_4g29840
malus_domestica	MD13G1060700.v1.1 MD13G1061400.v1.1 MD16G1059900.v1.1
prunus_persica	Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1 Prupe.1G288700_v2.0.a1
pyrus_communis	pycom16g05220
rosa_chinensis	RchiOBHm_Chr4g0438091
rosa_laevigata	RLG00000001448
rosa_roxburghii	Rroxscaffold_5G00379230
rosa_rugosa	Rorug04G0306900
rosa_samantha	Rh4BG369300 Rh4CG383400 Rh4DG364100
rosa_wichuraiana	Rw0G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	67
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	9, 21
AclWI	GGATC	1 cut(s)	325
AcoI	YGGCCR	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	2 cut(s)	116, 314
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	307, 346
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	1 cut(s)	325
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	18, 80, 98, 302
AspLEI	GCGC	2 cut(s)	70, 103
AspS9I	GGNCC	2 cut(s)	295, 344
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	295, 344
BalI	TGGCCA	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	30, 67, 85, 289
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	309, 348
BciVI	GTATCC	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	71
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	4 cut(s)	19, 81, 99, 303
BlsI	GCNGC	4 cut(s)	20, 82, 100, 304
Bme1390I	CCNGG	2 cut(s)	309, 348
Bme18I	GGWCC	2 cut(s)	295, 344
BmgT120I	GGNCC	2 cut(s)	295, 344
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	2 cut(s)	309, 348
BoxI	GACNNNNGTC	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	68
BsaJI	CCNNGG	3 cut(s)	192, 291, 307
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 314
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	104, 179
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	309, 348
BseDI	CCNNGG	3 cut(s)	192, 291, 307
BseLI	CCNNNNNNNGG	2 cut(s)	116, 314
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	2 cut(s)	104, 179
BseRI	GAGGAG	2 cut(s)	156, 159
BseXI	GCAGC	4 cut(s)	30, 67, 85, 289
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	252
BshNI	GGYRCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	77, 261
BslI	CCNNNNNNNGG	2 cut(s)	116, 314
BsnI	GGCC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	317
BspACI	CCGC	2 cut(s)	9, 21
BspANI	GGCC	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	139
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	104, 179
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	192, 291, 307
BssMI	GATC	1 cut(s)	317
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	192, 291
Bst2UI	CCWGG	2 cut(s)	309, 348
Bst6I	CTCTTC	1 cut(s)	341
BstACI	GRCGYC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	141, 243
BstEII	GGTNACC	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	70, 103
BstKTI	GATC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 89, 98, 203
BstNI	CCWGG	2 cut(s)	309, 348
BstNSI	RCATGY	1 cut(s)	241
BstPAI	GACNNNNGTC	1 cut(s)	293
BstPI	GGTNACC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	307, 346
BstUI	CGCG	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	30, 67, 85, 289
BstX2I	RGATCY	1 cut(s)	317
BstYI	RGATCY	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	141, 243
CfoI	GCGC	2 cut(s)	70, 103
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	295, 344
CsiI	ACCWGGT	1 cut(s)	346
CviAII	CATG	2 cut(s)	238, 299
CviJI	RGCY	7 cut(s)	80, 98, 125, 139, 151, 197, 252
CviKI_1	RGCY	7 cut(s)	80, 98, 125, 139, 151, 197, 252
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	1 cut(s)	319
DpnII	GATC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	192, 291
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	295, 344
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
EcoRII	CCWGG	2 cut(s)	307, 346
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	192, 291
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	192, 291
FaeI	CATG	2 cut(s)	241, 302
FaiI	YATR	3 cut(s)	216, 239, 300
FatI	CATG	2 cut(s)	237, 298
Fnu4HI	GCNGC	4 cut(s)	19, 81, 99, 303
Fsp4HI	GCNGC	4 cut(s)	19, 81, 99, 303
GlaI	GCGC	2 cut(s)	69, 102
GluI	GCNGC	4 cut(s)	19, 81, 99, 303
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	77, 261
HhaI	GCGC	2 cut(s)	70, 103
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	241, 302
Hin6I	GCGC	2 cut(s)	68, 101
HinP1I	GCGC	2 cut(s)	68, 101
HpaII	CCGG	2 cut(s)	77, 261
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 89, 98, 203
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	241, 302
HspAI	GCGC	2 cut(s)	68, 101
KasI	GGCGCC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	163, 169
Lsp1109I	GCAGC	4 cut(s)	30, 67, 85, 289
MabI	ACCWGGT	1 cut(s)	346
MaeIII	GTNAC	2 cut(s)	329, 353
MalI	GATC	1 cut(s)	319
MboI	GATC	1 cut(s)	317
MboII	GAAGA	2 cut(s)	312, 328
MflI	RGATCY	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	252
MluNI	TGGCCA	1 cut(s)	252
Mly113I	GGCGCC	1 cut(s)	68
MnlI	CCTC	7 cut(s)	58, 114, 177, 180, 232, 295, 344
Mox20I	TGGCCA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	252
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	2 cut(s)	77, 261
MspR9I	CCNGG	2 cut(s)	309, 348
MvaI	CCWGG	2 cut(s)	309, 348
MvnI	CGCG	1 cut(s)	9
MwoI	GCNNNNNNNGC	4 cut(s)	15, 89, 98, 203
NarI	GGCGCC	1 cut(s)	68
NdeII	GATC	1 cut(s)	317
NlaIII	CATG	2 cut(s)	241, 302
NlaIV	GGNNCC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	4 cut(s)	20, 82, 100, 304
PluTI	GGCGCC	1 cut(s)	71
PshAI	GACNNNNGTC	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	307, 346
PspEI	GGTNACC	1 cut(s)	329
PspGI	CCWGG	2 cut(s)	307, 346
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	2 cut(s)	295, 344
PsuI	RGATCY	1 cut(s)	317
SatI	GCNGC	4 cut(s)	19, 81, 99, 303
Sau3AI	GATC	1 cut(s)	317
Sau96I	GGNCC	2 cut(s)	295, 344
ScrFI	CCNGG	2 cut(s)	309, 348
SetI	ASST	6 cut(s)	100, 224, 297, 313, 336, 352
SexAI	ACCWGGT	1 cut(s)	346
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	2 cut(s)	295, 344
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SsiI	CCGC	2 cut(s)	9, 21
SspDI	GGCGCC	1 cut(s)	67
StyD4I	CCNGG	2 cut(s)	307, 346
StyI	CCWWGG	2 cut(s)	192, 291
TaqI	TCGA	1 cut(s)	287
TaqII	GACCGA	1 cut(s)	294
TseI	GCWGC	4 cut(s)	18, 80, 98, 302
TspDTI	ATGAA	2 cut(s)	129, 259
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	295, 344
XceI	RCATGY	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.