MD13G1068700.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
4714270 .. 4717046
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1068700.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGAGCTCCGACGCTTCCGACTCGTCCGGCGGGGGTAGTGCTTCGACGGCCGACAAGGACAAGCAGAAGGAGAAGGAGAAGGCCCGAGCCAGCACCTCCCTCATACTCTGGCACGCCCACAACAACGACGGCGTCGCCGTCCGCAAGCTCCTCGAGGAGGATAGCTCCCTCGTCCACGTCCACGACTACGACAACCGCACTCCGCTCCACGCCGCCTCGCTCCACGGCTGTATCGACGTCGCCAACTGCCTTATTGAGCATGGCGCCGATGTCAACGCCCAAGATCGCTGGAAGAACACCCCTCTGGCTGATGCAGAAGGAGCTAAGAAGCAGGCGATGATTGAGCTTCTGAAATCGAACGGTGGCTTGTCTTATGGCCACAATGGGAGCCATTTCGGACCGAAGCCCGTGCCGCCCCCTCTTCCCAGCAAGCGTGATTGGGAGATTGAACCGTCCGAGCTCGACTTCACCAACTCACTTACCATTGGGAAGGGATCGTTTGGTGAGGTTTTAAAAGTGCATTGGCGTGGAACTGAAGTAGCTGTCAAGCGAATTCGTCCATCTCTTTCCAGTGATAGAATGGTGATCCAAGACTTCCGGCATGAAGTTGATTTGCTAGTGAAGTTTCATCACCCTAATATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAGCCCCTTATGTTAATAACGGAGTATTTAAGAGGGGGTGATCTTCATCAGTACCTCAAGGAAAGGGGTGCACTTAGTCCTACAACAGCAATTAACTTTGCTTTGGATATTGCCAGAAATGTTCTCTTAGTAAATTCCAGTGCCGACCATTTAAAAATCACAGATTTTGGATTAAGCAAGCTCGTCAAGGTTCAGAATTCTCACGATGTATACAAGATGACTGGCGAAACTGGAACCTACCGCTATATGGCCCCCGAAGTTTTTAAGCACAAGAGATATGATAAGAAGGTTGACGTGTTCTCTTTCGCAATGATATTGTACGAGATGCTTGAAGGGAACCAACCACTTTCGGATTACGAGGCTTATGAAGCAGCCAAATATGTGGCGGAAGGACGCAGGCCTTCGTTTCATGGAAAAGGGCACACCCCTGAACTGAAAGAGTAA

Protein Analysis

372

Amino Acids

41.31

Weight (kDa)

6.68

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 26 - 95 9.3e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 39 - 118 2.8e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 58 - 102 6.1e-06 Ankyrin repeats (many copies)
Ank PF00023 64 - 96 4.4e-08 Ankyrin repeat
Pkinase PF00069 159 - 263 5.7e-18 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 161 - 263 1.1e-21 Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr PF07714 262 - 358 1.7e-19 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 263 - 344 1.5e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AbsI CCTCGAGG 1 cut(s) 152
AccB1I GGYRCC 1 cut(s) 263
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 1 cut(s) 882
AciI CCGC 8 cut(s) 30, 142, 196, 203, 213, 413, 913, 1058
AclWI GGATC 2 cut(s) 502, 580
AcoI YGGCCR 2 cut(s) 48, 376
AcsI RAATTY 3 cut(s) 552, 805, 868
AcuI CTGAAG 1 cut(s) 555
AcyI GRCGYC 3 cut(s) 132, 237, 264
AfaI GTAC 2 cut(s) 725, 992
AfiI CCNNNNNNNGG 2 cut(s) 157, 919
AflIII ACRYGT 1 cut(s) 966
AgsI TTSAA 2 cut(s) 449, 1004
AjiI CACGTC 2 cut(s) 178, 967
AluBI AGCT 9 cut(s) 6, 148, 165, 323, 346, 460, 542, 659, 853
AluI AGCT 9 cut(s) 6, 148, 165, 323, 346, 460, 542, 659, 853
Alw21I GWGCWC 3 cut(s) 8, 462, 745
Alw44I GTGCAC 1 cut(s) 741
AlwI GGATC 2 cut(s) 502, 580
Ama87I CYCGRG 2 cut(s) 84, 152
AoxI GGCC 5 cut(s) 48, 81, 376, 921, 1070
ApaLI GTGCAC 1 cut(s) 741
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 3 cut(s) 552, 805, 868
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 82, 398, 922
AsuHPI GGTGA 5 cut(s) 460, 515, 595, 623, 722
AvaI CYCGRG 2 cut(s) 84, 152
AvaII GGWCC 1 cut(s) 398
BaeGI GKGCMC 2 cut(s) 745, 1095
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 1 cut(s) 263
BanII GRGCYC 2 cut(s) 8, 462
Bbv12I GWGCWC 3 cut(s) 8, 462, 745
BbvI GCAGC 1 cut(s) 1055
BccI CCATC 1 cut(s) 568
BceAI ACGGC 4 cut(s) 63, 122, 145, 241
BcgI CGANNNNNNTGC 4 cut(s) 133, 167, 391, 425
BfaI CTAG 1 cut(s) 617
BfoI RGCGCY 1 cut(s) 267
BisI GCNGC 3 cut(s) 213, 413, 1044
BlsI GCNGC 3 cut(s) 214, 414, 1045
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 2 cut(s) 84, 152
BmgBI CACGTC 2 cut(s) 178, 967
BmgT120I GGNCC 3 cut(s) 82, 398, 922
BmiI GGNNCC 5 cut(s) 265, 389, 907, 924, 1010
BmsI GCATC 2 cut(s) 301, 987
BplI GAGNNNNNCTC 2 cut(s) 149, 181
BpuEI CTTGAG 1 cut(s) 713
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 3 cut(s) 132, 237, 264
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 919
Bse1I ACTGG 4 cut(s) 570, 810, 898, 907
Bse3DI GCAATG 1 cut(s) 987
Bse8I GATNNNNATC 1 cut(s) 717
BseDI CCNNGG 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 2 cut(s) 157, 919
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 4 cut(s) 570, 810, 898, 907
BseRI GAGGAG 2 cut(s) 140, 170
BseSI GKGCMC 2 cut(s) 745, 1095
BseX3I CGGCCG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 1055
BseYI CCCAGC 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 5 cut(s) 50, 83, 378, 923, 1072
BshNI GGYRCC 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 3 cut(s) 8, 462, 745
BsiHKCI CYCGRG 2 cut(s) 84, 152
BsiSI CCGG 2 cut(s) 27, 598
BslI CCNNNNNNNGG 2 cut(s) 157, 919
BsnI GGCC 5 cut(s) 50, 83, 378, 923, 1072
BsoBI CYCGRG 2 cut(s) 84, 152
Bsp1286I GDGCHC 4 cut(s) 8, 462, 745, 1095
Bsp143I GATC 4 cut(s) 283, 494, 585, 712
BspACI CCGC 8 cut(s) 30, 142, 196, 203, 213, 413, 913, 1058
BspANI GGCC 5 cut(s) 50, 83, 378, 923, 1072
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 5 cut(s) 265, 389, 907, 924, 1010
BspPI GGATC 2 cut(s) 502, 580
BspT107I GGYRCC 1 cut(s) 263
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 987
BsrI ACTGG 4 cut(s) 570, 810, 898, 907
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 4 cut(s) 283, 494, 585, 712
BssNAI GTATAC 1 cut(s) 883
BssNI GRCGYC 3 cut(s) 132, 237, 264
Bst1107I GTATAC 1 cut(s) 883
Bst4CI ACNGT 2 cut(s) 362, 453
Bst6I CTCTTC 1 cut(s) 426
BstACI GRCGYC 3 cut(s) 132, 237, 264
BstC8I GCNNGC 7 cut(s) 91, 114, 146, 333, 431, 851, 1070
BstDEI CTNAG 4 cut(s) 324, 666, 746, 799
BstDSI CCRYGG 1 cut(s) 223
BstENI CCTNNNNNAGG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 4 cut(s) 286, 497, 588, 715
BstMBI GATC 4 cut(s) 283, 494, 585, 712
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 47, 320, 412, 1040
BstSLI GKGCMC 2 cut(s) 745, 1095
BstV1I GCAGC 1 cut(s) 1055
BstXI CCANNNNNNTGG 2 cut(s) 653, 1054
BstZ17I GTATAC 1 cut(s) 883
BstZI CGGCCG 1 cut(s) 48
BsuRI GGCC 5 cut(s) 50, 83, 378, 923, 1072
BtgI CCRYGG 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 350
BtrI CACGTC 2 cut(s) 178, 967
BtsIMutI CAGTG 3 cut(s) 577, 663, 817
Cac8I GCNNGC 7 cut(s) 91, 114, 146, 333, 431, 851, 1070
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 82, 398, 922
CpoI CGGWCCG 1 cut(s) 398
CseI GACGC 3 cut(s) 20, 121, 1074
Csp6I GTAC 2 cut(s) 724, 991
CspI CGGWCCG 1 cut(s) 398
CviAII CATG 3 cut(s) 260, 602, 1082
CviQI GTAC 2 cut(s) 724, 991
DdeI CTNAG 4 cut(s) 324, 666, 746, 799
DinI GGCGCC 1 cut(s) 265
DpnI GATC 4 cut(s) 285, 496, 587, 714
DpnII GATC 4 cut(s) 283, 494, 585, 712
DraI TTTAAA 2 cut(s) 513, 825
EaeI YGGCCR 2 cut(s) 48, 376
EagI CGGCCG 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
EciI GGCGGA 1 cut(s) 1073
Ecl136II GAGCTC 2 cut(s) 6, 460
EclXI CGGCCG 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 8, 462
Eco47I GGWCC 1 cut(s) 398
Eco52I CGGCCG 1 cut(s) 48
Eco53kI GAGCTC 2 cut(s) 6, 460
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 2 cut(s) 84, 152
EcoICRI GAGCTC 2 cut(s) 6, 460
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRI GAATTC 2 cut(s) 552, 868
EcoT38I GRGCYC 2 cut(s) 8, 462
EgeI GGCGCC 1 cut(s) 265
EheI GGCGCC 1 cut(s) 265
FaeI CATG 3 cut(s) 263, 605, 1085
FatI CATG 3 cut(s) 259, 601, 1081
FauI CCCGC 1 cut(s) 23
FblI GTMKAC 1 cut(s) 882
Fnu4HI GCNGC 3 cut(s) 213, 413, 1044
FriOI GRGCYC 2 cut(s) 8, 462
Fsp4HI GCNGC 3 cut(s) 213, 413, 1044
FspBI CTAG 1 cut(s) 617
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 213, 413, 1044
GsaI CCCAGC 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 5 cut(s) 50, 83, 378, 923, 1072
HapII CCGG 2 cut(s) 27, 598
HgaI GACGC 3 cut(s) 20, 121, 1074
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 3 cut(s) 132, 237, 264
Hin1II CATG 3 cut(s) 263, 605, 1085
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HincII GTYRAC 2 cut(s) 274, 964
HindII GTYRAC 2 cut(s) 274, 964
HinfI GANTC 1 cut(s) 20
HpaII CCGG 2 cut(s) 27, 598
HphI GGTGA 5 cut(s) 460, 515, 595, 623, 722
Hpy166II GTNNAC 6 cut(s) 175, 181, 274, 743, 883, 964
Hpy188I TCNGA 7 cut(s) 10, 19, 351, 398, 457, 867, 1024
Hpy188III TCNNGA 1 cut(s) 875
Hpy8I GTNNAC 6 cut(s) 175, 181, 274, 743, 883, 964
Hpy99I CGWCG 6 cut(s) 14, 49, 131, 137, 239, 242
HpyAV CCTTC 9 cut(s) 61, 67, 73, 311, 484, 952, 998, 1055, 1083
HpyCH4III ACNGT 2 cut(s) 362, 453
HpyCH4IV ACGT 3 cut(s) 177, 237, 966
HpyCH4V TGCA 3 cut(s) 314, 520, 743
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 320, 412, 1040
HpyF3I CTNAG 4 cut(s) 324, 666, 746, 799
HpySE526I ACGT 3 cut(s) 177, 237, 966
Hsp92I GRCGYC 3 cut(s) 132, 237, 264
Hsp92II CATG 3 cut(s) 263, 605, 1085
HspAI GCGC 1 cut(s) 264
KasI GGCGCC 1 cut(s) 263
Kzo9I GATC 4 cut(s) 283, 494, 585, 712
LmnI GCTCC 8 cut(s) 11, 153, 170, 210, 225, 320, 387, 656
Lsp1109I GCAGC 1 cut(s) 1055
LweI GCATC 2 cut(s) 301, 987
MaeI CTAG 1 cut(s) 617
MaeII ACGT 3 cut(s) 177, 237, 966
MaeIII GTNAC 1 cut(s) 661
MalI GATC 4 cut(s) 285, 496, 587, 714
MbiI CCGCTC 1 cut(s) 205
MboI GATC 4 cut(s) 283, 494, 585, 712
MboII GAAGA 4 cut(s) 304, 413, 682, 707
MhlI GDGCHC 4 cut(s) 8, 462, 745, 1095
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 5 cut(s) 552, 647, 762, 805, 868
MluNI TGGCCA 1 cut(s) 378
Mly113I GGCGCC 1 cut(s) 264
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 2 cut(s) 33, 42
Mox20I TGGCCA 1 cut(s) 378
MscI TGGCCA 1 cut(s) 378
MseI TTAA 7 cut(s) 512, 686, 701, 765, 824, 845, 936
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 378
MspI CCGG 2 cut(s) 27, 598
MwoI GCNNNNNNNGC 4 cut(s) 47, 320, 412, 1040
NarI GGCGCC 1 cut(s) 264
NdeII GATC 4 cut(s) 283, 494, 585, 712
NlaIII CATG 3 cut(s) 263, 605, 1085
NlaIV GGNNCC 5 cut(s) 265, 389, 907, 924, 1010
NmuCI GTSAC 1 cut(s) 661
PaeR7I CTCGAG 1 cut(s) 152
PceI AGGCCT 1 cut(s) 1072
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 231
PflFI GACNNNGTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 214, 414, 1045
PleI GAGTC 1 cut(s) 14
PluTI GGCGCC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 14
Psp124BI GAGCTC 2 cut(s) 8, 462
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 5 cut(s) 265, 389, 907, 924, 1010
PspPI GGNCC 3 cut(s) 82, 398, 922
PspXI VCTCGAGB 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 131
RsaI GTAC 2 cut(s) 725, 992
RsaNI GTAC 2 cut(s) 724, 991
RseI CAYNNNNRTG 1 cut(s) 525
Rsr2I CGGWCCG 1 cut(s) 398
RsrII CGGWCCG 1 cut(s) 398
SacI GAGCTC 2 cut(s) 8, 462
SaqAI TTAA 7 cut(s) 512, 686, 701, 765, 824, 845, 936
SatI GCNGC 3 cut(s) 213, 413, 1044
Sau3AI GATC 4 cut(s) 283, 494, 585, 712
Sau96I GGNCC 3 cut(s) 82, 398, 922
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 4 cut(s) 8, 462, 745, 1095
SfaNI GCATC 2 cut(s) 301, 987
SfoI GGCGCC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 2 cut(s) 152, 728
SmoI CTYRAG 2 cut(s) 152, 728
Sse9I AATT 5 cut(s) 552, 647, 762, 805, 868
SseBI AGGCCT 1 cut(s) 1072
SsiI CCGC 8 cut(s) 30, 142, 196, 203, 213, 413, 913, 1058
SspDI GGCGCC 1 cut(s) 263
SspMI CTAG 1 cut(s) 617
SstI GAGCTC 2 cut(s) 8, 462
StuI AGGCCT 1 cut(s) 1072
TaaI ACNGT 2 cut(s) 362, 453
TaiI ACGT 3 cut(s) 180, 240, 969
TaqI TCGA 5 cut(s) 44, 153, 234, 356, 462
TaqII GACCGA 1 cut(s) 415
TasI AATT 5 cut(s) 552, 647, 762, 805, 868
TauI GCSGC 2 cut(s) 215, 415
Tru1I TTAA 7 cut(s) 512, 686, 701, 765, 824, 845, 936
Tru9I TTAA 7 cut(s) 512, 686, 701, 765, 824, 845, 936
TscAI CASTG 3 cut(s) 577, 670, 817
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 1 cut(s) 1043
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 5 cut(s) 617, 618, 707, 1053, 1070
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 3 cut(s) 577, 670, 817
Tth111I GACNNNGTC 1 cut(s) 131
VneI GTGCAC 1 cut(s) 741
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 3 cut(s) 552, 805, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 882
XspI CTAG 1 cut(s) 617
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.