Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008776

Physical Location & Seq

Genomic Coordinates Forward (+)

60318958 .. 60321857

Gene Structure 2900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGTTAATTACGGAGTATTTAAGAGGGGGAGATCTTCATCAGTACCTTAAGGAAAAGGGTTCACTTAGTCCTACAACAGCTGTCAGCTTTGCCTTAGACATTGCAAGAGGGATGGCTTATCTTCACAATGAGCCAAACGTTATAATTCATCGTGACCTAAAACCAAGGAATGTTCTTTTAGTCAATTCCAGTGCAGACCATCTCAAAGTTGGAGATTTTGGACTAAGCAAGCTCATCAAGGTTCAAAATTCTCATGATGTGTACAAAATGACTGGCGAAACTGGGAGTTACCGATATATGGCTCCCGAAGTTTTTAAGCACCGGCGATATGATAAGAAGGTTGATGTGTTCTCTTTTGCAATGATACTGTACGAGATGCTTGAAGGAGATCCACCACTTTCAAATTACGAGCCTTATGATGCAGCCAAATTTGTGGCAGAAGGACACAGGCCAATGTTTCATGGAAAAGGACACACCCCTGAACTGAAAGAGTTAATAGAGCAATGCTGGTCCGCTGACATGAACCAAAGACCTTCTTTCTTGGAAATTCTGAAAAAGCTTGAGAAGGTAAAGGAAAATCTTCAAACAGATCATCACTGGCACATCTTCAATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Pkinase_Tyr

Protein Analysis

205

Amino Acids

23.7

Weight (kDa)

6.87

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 187	5.1e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 185	8.5e-43	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14000
fragaria_vesca	FvH4_4g30780 FvH4_4g30780 FvH4_4g30780
malus_domestica	MD13G1068700.v1.1 MD16G1067500.v1.1 MD16G1067600.v1.1
prunus_persica	Prupe.1G279200_v2.0.a1
pyrus_communis	pycom13g06050 pycom16g05900
rosa_chinensis	RchiOBHm_Chr4g0439171
rosa_laevigata	RLG00000006291
rosa_multiflora	Rmu_sc0002236.1_g000008 Rmu_sc0027506.1_g000011
rosa_roxburghii	Rroxscaffold_5G00380150 Rroxscaffold_5G00380160
rosa_rugosa	Rorug04G0316400
rosa_samantha	Rh4AG367200 Rh4BG378800 Rh4CG393200 Rh4DG373400
rosa_wichuraiana	Rw0G011680 Rw5G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AciI	CCGC	1 cut(s)	513
AclI	AACGTT	1 cut(s)	138
AclWI	GGATC	1 cut(s)	383
AcsI	RAATTY	3 cut(s)	247, 428, 546
AfaI	GTAC	3 cut(s)	44, 263, 371
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	47
AgsI	TTSAA	5 cut(s)	245, 383, 402, 584, 610
AluBI	AGCT	4 cut(s)	80, 87, 232, 559
AluI	AGCT	4 cut(s)	80, 87, 232, 559
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	3 cut(s)	247, 428, 546
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	510
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	2 cut(s)	106, 207
BfrI	CTTAAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	31
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	366, 409
BmuI	ACTGGG	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	581
BsaBI	GATNNNNATC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	4 cut(s)	189, 277, 286, 602
Bse3DI	GCAATG	3 cut(s)	99, 366, 509
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMI	GCAATG	3 cut(s)	99, 366, 509
BseNI	ACTGG	4 cut(s)	189, 277, 286, 602
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	1 cut(s)	451
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	31, 388, 589
BspACI	CCGC	1 cut(s)	513
BspANI	GGCC	1 cut(s)	451
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	303
BspPI	GGATC	1 cut(s)	383
BspTI	CTTAAG	1 cut(s)	47
BsrDI	GCAATG	3 cut(s)	99, 366, 509
BsrFI	RCCGGY	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	4 cut(s)	189, 277, 286, 602
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	3 cut(s)	31, 388, 589
BssT1I	CCWWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	369
BstAFI	CTTAAG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	3 cut(s)	65, 94, 224
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	3 cut(s)	34, 391, 592
BstMBI	GATC	3 cut(s)	31, 388, 589
BstV1I	GCAGC	1 cut(s)	434
BstX2I	RGATCY	2 cut(s)	31, 388
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstYI	RGATCY	2 cut(s)	31, 388
BsuRI	GGCC	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	196, 595
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	253
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	510
Csp6I	GTAC	3 cut(s)	43, 262, 370
CviAII	CATG	3 cut(s)	254, 461, 520
CviQI	GTAC	3 cut(s)	43, 262, 370
DdeI	CTNAG	3 cut(s)	65, 94, 224
DpnI	GATC	3 cut(s)	33, 390, 591
DpnII	GATC	3 cut(s)	31, 388, 589
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	257, 464, 523
FaiI	YATR	9 cut(s)	143, 255, 297, 299, 330, 417, 462, 521, 616
FalI	AAGNNNNNCTT	2 cut(s)	520, 552
FatI	CATG	3 cut(s)	253, 460, 519
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	3 cut(s)	257, 464, 523
HindIII	AAGCTT	1 cut(s)	557
HpaII	CCGG	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	62, 262
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	3 cut(s)	152, 254, 305
Hpy8I	GTNNAC	2 cut(s)	62, 262
HpyAV	CCTTC	5 cut(s)	331, 377, 434, 543, 559
HpyCH4III	ACNGT	1 cut(s)	369
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	104, 194, 359, 422
HpyF3I	CTNAG	3 cut(s)	65, 94, 224
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	3 cut(s)	257, 464, 523
Kzo9I	GATC	3 cut(s)	31, 388, 589
LmnI	GCTCC	1 cut(s)	307
LpnPI	CCDG	8 cut(s)	202, 258, 267, 335, 433, 492, 493, 583
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	366, 409
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	152, 287
MalI	GATC	3 cut(s)	33, 390, 591
MboI	GATC	3 cut(s)	31, 388, 589
MboII	GAAGA	4 cut(s)	26, 113, 572, 598
MflI	RGATCY	2 cut(s)	31, 388
MluCI	AATT	7 cut(s)	6, 144, 184, 247, 403, 428, 546
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	17, 101
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	5 cut(s)	5, 20, 48, 315, 494
MspA1I	CMGCKG	2 cut(s)	80, 515
MspCI	CTTAAG	1 cut(s)	47
MspI	CCGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	31, 388, 589
NlaIII	CATG	3 cut(s)	257, 464, 523
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	152
PagI	TCATGA	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	579
PkrI	GCNGC	1 cut(s)	424
PsiI	TTATAA	1 cut(s)	143
Psp1406I	AACGTT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	31, 388
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	3 cut(s)	44, 263, 371
RsaNI	GTAC	3 cut(s)	43, 262, 370
SaqAI	TTAA	5 cut(s)	5, 20, 48, 315, 494
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	3 cut(s)	31, 388, 589
Sau96I	GGNCC	1 cut(s)	510
SfaNI	GCATC	2 cut(s)	366, 409
SgrAI	CRCCGGYG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	510
SmlI	CTYRAG	2 cut(s)	47, 560
SmoI	CTYRAG	2 cut(s)	47, 560
Sse9I	AATT	7 cut(s)	6, 144, 184, 247, 403, 428, 546
SsiI	CCGC	1 cut(s)	513
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	369
TaiI	ACGT	1 cut(s)	141
TasI	AATT	7 cut(s)	6, 144, 184, 247, 403, 428, 546
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	5 cut(s)	5, 20, 48, 315, 494
Tru9I	TTAA	5 cut(s)	5, 20, 48, 315, 494
TscAI	CASTG	2 cut(s)	196, 602
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	4 cut(s)	26, 137, 449, 536
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	196, 602
Vha464I	CTTAAG	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	3 cut(s)	247, 428, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.