RLG00000006291
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
6047369 .. 6051013
3645 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006291

Sequence Viewer

Length: 1251 bp
ATGAGCTCCTCCTCCGACGCCTCCGACTCGTCGGCAGCTAAGCCCGACAAGGACAAGCAGAAGGAGAAGGCGAGAGTGAGCCGCACCTCCCTCATACTCTGGCACGCTCACCACAACGACGCCGTCGCAGTCCGCAAGCTTCTCGAGGAGGATCGCGCCCTCGTTCAGGCCAGAGACTACGACAACCGCACTCCGCTCCACGTCGCCTCCCTCCACGGCTGGATCGACGTCGCCAAATGCCTCATCGAGTACGGCGCCGATGTCAACGCCCAGGATCGTTGGAAGAACACTCCTCTAGCTGATGCTGAAGGAGCTAAGAAGCACACCATGATTGAGCTCTTGAAATCCTATGGTGGATTATCTTATGGCCAAAATGGGAGCCATTTCGAACCGAAGCCGGTGGCGCCTCCTCTGCCAAACAAGTGTGATTGGGAAATTGAGCCTGCTGAGCTTGACTTCTCCGGATCAGTTACCATCGGGAAGGGCTCGTTTGGTGAGATTTTAAAAGCACATTGGCGTGGAACACCAGTAGCTGTCAAACGCATTCTTCCATCTCTTTCTGGTGATAGATTAGTGATTCAGGACTTCCGGCATGAAGTAAATTTGCTAGTGAAGCTTCGCCACCCTAATATAGTCCAATTTCTTGGAGCTGTCACAGAGAAGAAGCCTCTTATGTTAATTACAGAGTATTTAAGAGGGGGAGATCTTCATCAGTACCTTAAGGAAAAGGGTTCACTTAGTCCTACAACAGCTGTCAGCTTTGCCTTAGACATTGCAAGAGGGATGGCTTATCTTCACAATGAGCCAAATGTTATAATTCATCGTGACCTAAAACCAAGGAATGTTCTTTTAGTCAATTCCAGTGCAGACCATCTCAAAGTTGGAGATTTTGGACTAAGCAAGCTCATCAAGGTTCAAAATTCTCATGATGTGTACAAAATGACTGGCGAAACTGGAAGTTACCGATATATGGCTCCTGAAGTTTTTAAGCACCGGCGATATGATAAGAAGGTTGATGTGTTCTCTTTTGCAATGATACTGTACGAGATGCTCGAAGGAGATCCACCACTTTCAAATTACGAGCCTTATGATGCAGCCAAATTTGTGGCAGAAGGGCACAGGCCAATGTTTCATGGAAAAGGACACACCCCTGAACTGAAAGAGTTAATAGAGCATTGCTGGTCTGCTGACATGAACCAAAGACCTTCTTTCTTGGAAATTCTGAAAAAGCTTGAGAAGGTACATAGTTGA

Protein Analysis

417

Amino Acids

46.86

Weight (kDa)

8.2

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 22 - 92 7.6e-09 Ankyrin repeats (3 copies)
Ank_2 PF12796 36 - 117 1.4e-08 Ankyrin repeats (3 copies)
Ank_5 PF13857 47 - 99 3.8e-06 Ankyrin repeats (many copies)
Ank PF00023 61 - 93 9.3e-08 Ankyrin repeat
Ank_3 PF13606 61 - 90 3.9e-06 Ankyrin repeat
Pkinase PF00069 157 - 409 1.8e-57 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 158 - 411 1.7e-64 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
AatII GACGTC 1 cut(s) 231
AccB1I GGYRCC 2 cut(s) 254, 403
AccBSI CCGCTC 1 cut(s) 196
AccII CGCG 1 cut(s) 156
AccIII TCCGGA 1 cut(s) 461
AciI CCGC 4 cut(s) 82, 133, 187, 194
AclWI GGATC 5 cut(s) 159, 230, 282, 472, 1055
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 4 cut(s) 601, 919, 1100, 1218
AcuI CTGAAG 2 cut(s) 327, 999
AcyI GRCGYC 5 cut(s) 18, 120, 228, 255, 404
AfaI GTAC 5 cut(s) 251, 716, 935, 1043, 1242
AfiI CCNNNNNNNGG 2 cut(s) 166, 970
AflII CTTAAG 1 cut(s) 719
AgsI TTSAA 3 cut(s) 343, 917, 1074
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 1 cut(s) 270
Alw21I GWGCWC 2 cut(s) 8, 339
Alw26I GTCTC 1 cut(s) 168
AlwI GGATC 5 cut(s) 159, 230, 282, 472, 1055
AlwNI CAGNNNCTG 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 3 cut(s) 168, 367, 1121
ApeKI GCWGC 2 cut(s) 35, 1094
ApoI RAATTY 4 cut(s) 601, 919, 1100, 1218
AspLEI GCGC 3 cut(s) 158, 257, 406
AsuHPI GGTGA 3 cut(s) 101, 506, 575
AsuII TTCGAA 1 cut(s) 387
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 1119
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 2 cut(s) 254, 403
BanII GRGCYC 3 cut(s) 8, 339, 488
Bbv12I GWGCWC 2 cut(s) 8, 339
BbvI GCAGC 2 cut(s) 47, 1106
BccI CCATC 4 cut(s) 482, 559, 778, 879
BceAI ACGGC 3 cut(s) 107, 232, 268
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 2 cut(s) 296, 608
BfoI RGCGCY 2 cut(s) 258, 407
BfrI CTTAAG 1 cut(s) 719
BglII AGATCT 1 cut(s) 703
BisI GCNGC 3 cut(s) 36, 82, 1095
BlpI GCTNAGC 2 cut(s) 39, 447
BlsI GCNGC 3 cut(s) 37, 83, 1096
Bme1390I CCNGG 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 202
BmiI GGNNCC 4 cut(s) 256, 380, 405, 975
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 3 cut(s) 292, 1038, 1081
Bpu1102I GCTNAGC 2 cut(s) 39, 447
Bpu14I TTCGAA 1 cut(s) 387
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 5 cut(s) 18, 120, 228, 255, 404
BsaJI CCNNGG 3 cut(s) 214, 270, 836
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 970
Bse118I RCCGGY 2 cut(s) 397, 993
Bse1I ACTGG 4 cut(s) 527, 861, 949, 958
Bse3DI GCAATG 3 cut(s) 771, 1038, 1174
Bse8I GATNNNNATC 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 3 cut(s) 214, 270, 836
BseGI GGATG 1 cut(s) 789
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 166, 970
BseMI GCAATG 3 cut(s) 771, 1038, 1174
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 4 cut(s) 527, 861, 949, 958
BseRI GAGGAG 3 cut(s) 161, 282, 399
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 2 cut(s) 47, 1106
BsgI GTGCAG 1 cut(s) 885
Bsh1236I CGCG 1 cut(s) 156
BshFI GGCC 3 cut(s) 170, 369, 1123
BshNI GGYRCC 2 cut(s) 254, 403
BsiHKAI GWGCWC 2 cut(s) 8, 339
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 4 cut(s) 398, 462, 589, 994
BslI CCNNNNNNNGG 2 cut(s) 166, 970
BsmAI GTCTC 1 cut(s) 168
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 3 cut(s) 170, 369, 1123
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 387
Bsp1286I GDGCHC 4 cut(s) 8, 339, 488, 1119
Bsp13I TCCGGA 1 cut(s) 461
Bsp1407I TGTACA 1 cut(s) 933
Bsp143I GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
Bsp1720I GCTNAGC 2 cut(s) 39, 447
BspACI CCGC 4 cut(s) 82, 133, 187, 194
BspANI GGCC 3 cut(s) 170, 369, 1123
BspCNI CTCAG 1 cut(s) 439
BspEI TCCGGA 1 cut(s) 461
BspFNI CGCG 1 cut(s) 156
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 4 cut(s) 256, 380, 405, 975
BspPI GGATC 5 cut(s) 159, 230, 282, 472, 1055
BspT104I TTCGAA 1 cut(s) 387
BspT107I GGYRCC 2 cut(s) 254, 403
BspTI CTTAAG 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 196
BsrDI GCAATG 3 cut(s) 771, 1038, 1174
BsrFI RCCGGY 2 cut(s) 397, 993
BsrGI TGTACA 1 cut(s) 933
BsrI ACTGG 4 cut(s) 527, 861, 949, 958
BssAI RCCGGY 2 cut(s) 397, 993
BssECI CCNNGG 3 cut(s) 214, 270, 836
BssMI GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
BssNI GRCGYC 5 cut(s) 18, 120, 228, 255, 404
BssT1I CCWWGG 1 cut(s) 836
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 1 cut(s) 1041
BstACI GRCGYC 5 cut(s) 18, 120, 228, 255, 404
BstAFI CTTAAG 1 cut(s) 719
BstAUI TGTACA 1 cut(s) 933
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 4 cut(s) 105, 137, 444, 902
BstDEI CTNAG 6 cut(s) 39, 315, 447, 737, 766, 896
BstDSI CCRYGG 1 cut(s) 214
BstENI CCTNNNNNAGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 789
BstFNI CGCG 1 cut(s) 156
BstH2I RGCGCY 2 cut(s) 258, 407
BstHHI GCGC 3 cut(s) 158, 257, 406
BstKTI GATC 6 cut(s) 154, 225, 277, 467, 706, 1063
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
BstMWI GCNNNNNNNGC 5 cut(s) 311, 403, 412, 448, 613
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 47, 1106
BstX2I RGATCY 2 cut(s) 703, 1060
BstXI CCANNNNNNTGG 2 cut(s) 644, 1105
BstYI RGATCY 2 cut(s) 703, 1060
BsuRI GGCC 3 cut(s) 170, 369, 1123
BtgI CCRYGG 1 cut(s) 214
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 789
BtsIMutI CAGTG 1 cut(s) 868
Cac8I GCNNGC 4 cut(s) 105, 137, 444, 902
CaiI CAGNNNCTG 1 cut(s) 533
CciI TCATGA 1 cut(s) 925
CfoI GCGC 3 cut(s) 158, 257, 406
Cfr10I RCCGGY 2 cut(s) 397, 993
CseI GACGC 2 cut(s) 26, 128
Csp6I GTAC 5 cut(s) 250, 715, 934, 1042, 1241
CviAII CATG 5 cut(s) 328, 593, 926, 1133, 1192
CviQI GTAC 5 cut(s) 250, 715, 934, 1042, 1241
DdeI CTNAG 6 cut(s) 39, 315, 447, 737, 766, 896
DinI GGCGCC 2 cut(s) 256, 405
DpnI GATC 6 cut(s) 153, 224, 276, 466, 705, 1062
DpnII GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
DraI TTTAAA 1 cut(s) 504
EaeI YGGCCR 1 cut(s) 367
Ecl136II GAGCTC 2 cut(s) 6, 337
Eco130I CCWWGG 1 cut(s) 836
Eco24I GRGCYC 3 cut(s) 8, 339, 488
Eco53kI GAGCTC 2 cut(s) 6, 337
Eco57I CTGAAG 2 cut(s) 327, 999
Eco88I CYCGRG 1 cut(s) 143
EcoICRI GAGCTC 2 cut(s) 6, 337
EcoNI CCTNNNNNAGG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 836
EcoT38I GRGCYC 3 cut(s) 8, 339, 488
EgeI GGCGCC 2 cut(s) 256, 405
EheI GGCGCC 2 cut(s) 256, 405
ErhI CCWWGG 1 cut(s) 836
FaeI CATG 5 cut(s) 331, 596, 929, 1136, 1195
FalI AAGNNNNNCTT 2 cut(s) 1192, 1224
FatI CATG 5 cut(s) 327, 592, 925, 1132, 1191
Fnu4HI GCNGC 3 cut(s) 36, 82, 1095
FokI GGATG 1 cut(s) 796
FriOI GRGCYC 3 cut(s) 8, 339, 488
Fsp4HI GCNGC 3 cut(s) 36, 82, 1095
FspBI CTAG 2 cut(s) 296, 608
GlaI GCGC 3 cut(s) 157, 256, 405
GluI GCNGC 3 cut(s) 36, 82, 1095
HaeII RGCGCY 2 cut(s) 258, 407
HaeIII GGCC 3 cut(s) 170, 369, 1123
HapII CCGG 4 cut(s) 398, 462, 589, 994
HgaI GACGC 2 cut(s) 26, 128
HhaI GCGC 3 cut(s) 158, 257, 406
Hin1I GRCGYC 5 cut(s) 18, 120, 228, 255, 404
Hin1II CATG 5 cut(s) 331, 596, 929, 1136, 1195
Hin6I GCGC 3 cut(s) 156, 255, 404
HinP1I GCGC 3 cut(s) 156, 255, 404
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 3 cut(s) 137, 614, 1229
HinfI GANTC 2 cut(s) 26, 577
HpaII CCGG 4 cut(s) 398, 462, 589, 994
HphI GGTGA 3 cut(s) 101, 506, 575
Hpy166II GTNNAC 3 cut(s) 265, 734, 934
Hpy188I TCNGA 3 cut(s) 16, 25, 1224
Hpy188III TCNNGA 8 cut(s) 143, 340, 462, 478, 581, 824, 926, 977
Hpy8I GTNNAC 3 cut(s) 265, 734, 934
Hpy99I CGWCG 7 cut(s) 20, 34, 122, 128, 206, 230, 233
HpyAV CCTTC 9 cut(s) 55, 61, 302, 475, 1003, 1049, 1106, 1215, 1231
HpyCH4III ACNGT 1 cut(s) 1041
HpyCH4IV ACGT 2 cut(s) 201, 228
HpyCH4V TGCA 4 cut(s) 776, 866, 1031, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 403, 412, 448, 613
HpyF3I CTNAG 6 cut(s) 39, 315, 447, 737, 766, 896
HpySE526I ACGT 2 cut(s) 201, 228
Hsp92I GRCGYC 5 cut(s) 18, 120, 228, 255, 404
Hsp92II CATG 5 cut(s) 331, 596, 929, 1136, 1195
HspAI GCGC 3 cut(s) 156, 255, 404
KasI GGCGCC 2 cut(s) 254, 403
Kpn2I TCCGGA 1 cut(s) 461
Kzo9I GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
LmnI GCTCC 6 cut(s) 11, 201, 311, 378, 647, 979
Lsp1109I GCAGC 2 cut(s) 47, 1106
LweI GCATC 3 cut(s) 292, 1038, 1081
MaeI CTAG 2 cut(s) 296, 608
MaeII ACGT 2 cut(s) 201, 228
MaeIII GTNAC 4 cut(s) 469, 652, 824, 959
MalI GATC 6 cut(s) 153, 224, 276, 466, 705, 1062
MbiI CCGCTC 1 cut(s) 196
MboI GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
MboII GAAGA 5 cut(s) 295, 539, 673, 698, 785
MflI RGATCY 2 cut(s) 703, 1060
MhlI GDGCHC 4 cut(s) 8, 339, 488, 1119
MlsI TGGCCA 1 cut(s) 369
MluNI TGGCCA 1 cut(s) 369
Mly113I GGCGCC 2 cut(s) 255, 404
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 4 cut(s) 39, 48, 260, 862
Mox20I TGGCCA 1 cut(s) 369
MroI TCCGGA 1 cut(s) 461
MscI TGGCCA 1 cut(s) 369
MseI TTAA 6 cut(s) 503, 677, 692, 720, 987, 1166
MslI CAYNNNNRTG 1 cut(s) 516
Msp20I TGGCCA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 752
MspCI CTTAAG 1 cut(s) 719
MspI CCGG 4 cut(s) 398, 462, 589, 994
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 5 cut(s) 311, 403, 412, 448, 613
NarI GGCGCC 2 cut(s) 255, 404
NdeII GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
NlaIII CATG 5 cut(s) 331, 596, 929, 1136, 1195
NlaIV GGNNCC 4 cut(s) 256, 380, 405, 975
NmuCI GTSAC 2 cut(s) 652, 824
NspV TTCGAA 1 cut(s) 387
PaeR7I CTCGAG 1 cut(s) 143
PagI TCATGA 1 cut(s) 925
PcsI WCGNNNNNNNCGW 2 cut(s) 222, 1050
PctI GAATGC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 577
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 3 cut(s) 37, 83, 1096
PleI GAGTC 1 cut(s) 20
PluTI GGCGCC 2 cut(s) 258, 407
PpsI GAGTC 1 cut(s) 20
PsiI TTATAA 1 cut(s) 815
Psp124BI GAGCTC 2 cut(s) 8, 339
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 4 cut(s) 256, 380, 405, 975
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 2 cut(s) 703, 1060
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 5 cut(s) 251, 716, 935, 1043, 1242
RsaNI GTAC 5 cut(s) 250, 715, 934, 1042, 1241
RseI CAYNNNNRTG 1 cut(s) 516
SacI GAGCTC 2 cut(s) 8, 339
SaqAI TTAA 6 cut(s) 503, 677, 692, 720, 987, 1166
SatI GCNGC 3 cut(s) 36, 82, 1095
Sau3AI GATC 6 cut(s) 151, 222, 274, 464, 703, 1060
SchI GAGTC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 4 cut(s) 8, 339, 488, 1119
SfaNI GCATC 3 cut(s) 292, 1038, 1081
SfoI GGCGCC 2 cut(s) 256, 405
Sfr274I CTCGAG 1 cut(s) 143
SfuI TTCGAA 1 cut(s) 387
SgrAI CRCCGGYG 1 cut(s) 993
SlaI CTCGAG 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 3 cut(s) 143, 719, 1232
SmoI CTYRAG 3 cut(s) 143, 719, 1232
SsiI CCGC 4 cut(s) 82, 133, 187, 194
SspDI GGCGCC 2 cut(s) 254, 403
SspMI CTAG 2 cut(s) 296, 608
SstI GAGCTC 2 cut(s) 8, 339
StyD4I CCNGG 1 cut(s) 270
StyI CCWWGG 1 cut(s) 836
TaaI ACNGT 1 cut(s) 1041
TaiI ACGT 2 cut(s) 204, 231
TaqI TCGA 5 cut(s) 144, 225, 246, 387, 1053
TatI WGTACW 1 cut(s) 933
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 6 cut(s) 503, 677, 692, 720, 987, 1166
Tru9I TTAA 6 cut(s) 503, 677, 692, 720, 987, 1166
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 2 cut(s) 652, 824
TseI GCWGC 2 cut(s) 35, 1094
Tsp45I GTSAC 2 cut(s) 652, 824
TspDTI ATGAA 5 cut(s) 609, 698, 809, 1121, 1208
TspRI CASTG 1 cut(s) 868
Tth111I GACNNNGTC 1 cut(s) 122
Vha464I CTTAAG 1 cut(s) 719
XagI CCTNNNNNAGG 1 cut(s) 164
XapI RAATTY 4 cut(s) 601, 919, 1100, 1218
XcmI CCANNNNNNNNNTGG 1 cut(s) 878
XhoI CTCGAG 1 cut(s) 143
XspI CTAG 2 cut(s) 296, 608
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.