Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027506.1

Orthogroup ID

OG0008776

Physical Location & Seq

Genomic Coordinates Forward (+)

26040 .. 26717

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027506.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgagctcctcctccgacgcctccgactcgtcgggagctaagccgtgcgccgcgacggccgacaaggacaagcagaaggagaaggcgagagtgagccgcacctcgctcatactctggcacgctcaccacaacgacgccgtcgcagtccgcaagcttctcgaggaggatcgcgccctcgttcacgccagagactacgacagccgcactccgctccacgtcgcctccctccacggctggatcgacgtcgccaaatgcctcatcgagtacggcgccgatgtcaacgcccaggatcgttggaagaacactcctctagctgatgctgaaggagctaagaagcccaccatgattgagctcctgaaatcttatggcggcttgtcttatggccaaaatgggagccattttgaaccgaagccggtggcgcctcctctgccaaacaagtgtgattgggaaattgagcctgctgagcttgacttctccggatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Pkinase_Tyr

Protein Analysis

161

Amino Acids

17.61

Weight (kDa)

5.95

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14000
fragaria_vesca	FvH4_4g30780 FvH4_4g30780 FvH4_4g30780
malus_domestica	MD13G1068700.v1.1 MD16G1067500.v1.1 MD16G1067600.v1.1
prunus_persica	Prupe.1G279200_v2.0.a1
pyrus_communis	pycom13g06050 pycom16g05900
rosa_chinensis	RchiOBHm_Chr4g0439171
rosa_laevigata	RLG00000006291
rosa_multiflora	Rmu_sc0002236.1_g000008 Rmu_sc0027506.1_g000011
rosa_roxburghii	Rroxscaffold_5G00380150 Rroxscaffold_5G00380160
rosa_rugosa	Rorug04G0316400
rosa_samantha	Rh4AG367200 Rh4BG378800 Rh4CG393200 Rh4DG373400
rosa_wichuraiana	Rw0G011680 Rw5G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccB1I	GGYRCC	2 cut(s)	269, 418
AccBSI	CCGCTC	1 cut(s)	211
AccII	CGCG	2 cut(s)	53, 171
AccIII	TCCGGA	1 cut(s)	476
AciI	CCGC	6 cut(s)	51, 97, 148, 202, 209, 369
AclWI	GGATC	3 cut(s)	174, 245, 297
AcoI	YGGCCR	2 cut(s)	57, 382
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	404
AjiI	CACGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	7 cut(s)	6, 38, 154, 314, 329, 352, 466
AluI	AGCT	7 cut(s)	6, 38, 154, 314, 329, 352, 466
Alw21I	GWGCWC	2 cut(s)	8, 354
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	174, 245, 297
Ama87I	CYCGRG	1 cut(s)	158
Aor13HI	TCCGGA	1 cut(s)	476
AoxI	GGCC	2 cut(s)	57, 382
AspLEI	GCGC	4 cut(s)	50, 173, 272, 421
AsuHPI	GGTGA	1 cut(s)	116
AvaI	CYCGRG	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	269, 418
BanII	GRGCYC	2 cut(s)	8, 354
Bbv12I	GWGCWC	2 cut(s)	8, 354
BceAI	ACGGC	5 cut(s)	28, 72, 122, 247, 283
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	2 cut(s)	273, 422
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	51, 97, 202, 370
BlpI	GCTNAGC	2 cut(s)	39, 462
BlsI	GCNGC	4 cut(s)	52, 98, 203, 371
Bme1390I	CCNGG	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	271, 395, 420
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	307
Bpu1102I	GCTNAGC	2 cut(s)	39, 462
BsaHI	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
BsaJI	CCNNGG	2 cut(s)	229, 285
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bse118I	RCCGGY	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	229, 285
BseMII	CTCAG	1 cut(s)	453
BseRI	GAGGAG	3 cut(s)	176, 297, 414
BseX3I	CGGCCG	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	53, 171
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 384
BshNI	GGYRCC	2 cut(s)	269, 418
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	8, 354
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	2 cut(s)	413, 477
BsmAI	GTCTC	1 cut(s)	183
BsnI	GGCC	2 cut(s)	59, 384
BsoBI	CYCGRG	1 cut(s)	158
Bsp1286I	GDGCHC	2 cut(s)	8, 354
Bsp13I	TCCGGA	1 cut(s)	476
Bsp143I	GATC	4 cut(s)	166, 237, 289, 479
Bsp1720I	GCTNAGC	2 cut(s)	39, 462
BspACI	CCGC	6 cut(s)	51, 97, 148, 202, 209, 369
BspANI	GGCC	2 cut(s)	59, 384
BspCNI	CTCAG	1 cut(s)	454
BspEI	TCCGGA	1 cut(s)	476
BspFNI	CGCG	2 cut(s)	53, 171
BspLI	GGNNCC	3 cut(s)	271, 395, 420
BspPI	GGATC	3 cut(s)	174, 245, 297
BspT107I	GGYRCC	2 cut(s)	269, 418
BsrBI	CCGCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	229, 285
BssMI	GATC	4 cut(s)	166, 237, 289, 479
BssNI	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
Bst2UI	CCWGG	1 cut(s)	287
BstACI	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
BstC8I	GCNNGC	3 cut(s)	120, 152, 459
BstDEI	CTNAG	3 cut(s)	39, 330, 462
BstDSI	CCRYGG	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	53, 171
BstH2I	RGCGCY	2 cut(s)	273, 422
BstHHI	GCGC	4 cut(s)	50, 173, 272, 421
BstKTI	GATC	4 cut(s)	169, 240, 292, 482
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	166, 237, 289, 479
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 326, 418, 427, 463
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	53, 171
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 384
BtgI	CCRYGG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	217
Cac8I	GCNNGC	3 cut(s)	120, 152, 459
CfoI	GCGC	4 cut(s)	50, 173, 272, 421
Cfr10I	RCCGGY	1 cut(s)	412
CseI	GACGC	2 cut(s)	26, 143
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	39, 330, 462
DinI	GGCGCC	2 cut(s)	271, 420
DpnI	GATC	4 cut(s)	168, 239, 291, 481
DpnII	GATC	4 cut(s)	166, 237, 289, 479
EaeI	YGGCCR	2 cut(s)	57, 382
EagI	CGGCCG	1 cut(s)	57
Ecl136II	GAGCTC	2 cut(s)	6, 352
EclXI	CGGCCG	1 cut(s)	57
Eco24I	GRGCYC	2 cut(s)	8, 354
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	6, 352
Eco57I	CTGAAG	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	158
EcoICRI	GAGCTC	2 cut(s)	6, 352
EcoRII	CCWGG	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	8, 354
EgeI	GGCGCC	2 cut(s)	271, 420
EheI	GGCGCC	2 cut(s)	271, 420
FaeI	CATG	1 cut(s)	346
FaiI	YATR	4 cut(s)	110, 344, 366, 381
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	51, 97, 202, 370
FriOI	GRGCYC	2 cut(s)	8, 354
Fsp4HI	GCNGC	4 cut(s)	51, 97, 202, 370
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	4 cut(s)	49, 172, 271, 420
GluI	GCNGC	4 cut(s)	51, 97, 202, 370
HaeII	RGCGCY	2 cut(s)	273, 422
HaeIII	GGCC	2 cut(s)	59, 384
HapII	CCGG	2 cut(s)	413, 477
HgaI	GACGC	2 cut(s)	26, 143
HhaI	GCGC	4 cut(s)	50, 173, 272, 421
Hin1I	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
Hin1II	CATG	1 cut(s)	346
Hin6I	GCGC	4 cut(s)	48, 171, 270, 419
HinP1I	GCGC	4 cut(s)	48, 171, 270, 419
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	413, 477
HphI	GGTGA	1 cut(s)	116
Hpy166II	GTNNAC	2 cut(s)	181, 280
Hpy188I	TCNGA	2 cut(s)	16, 25
Hpy188III	TCNNGA	4 cut(s)	33, 158, 355, 477
Hpy8I	GTNNAC	2 cut(s)	181, 280
Hpy99I	CGWCG	8 cut(s)	20, 34, 58, 137, 143, 221, 245, 248
HpyAV	CCTTC	3 cut(s)	70, 76, 317
HpyCH4IV	ACGT	2 cut(s)	216, 243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 326, 418, 427, 463
HpyF3I	CTNAG	3 cut(s)	39, 330, 462
HpySE526I	ACGT	2 cut(s)	216, 243
Hsp92I	GRCGYC	5 cut(s)	18, 135, 243, 270, 419
Hsp92II	CATG	1 cut(s)	346
HspAI	GCGC	4 cut(s)	48, 171, 270, 419
KasI	GGCGCC	2 cut(s)	269, 418
Kpn2I	TCCGGA	1 cut(s)	476
Kzo9I	GATC	4 cut(s)	166, 237, 289, 479
LmnI	GCTCC	6 cut(s)	11, 35, 216, 326, 357, 393
LpnPI	CCDG	8 cut(s)	100, 199, 220, 272, 299, 368, 426, 471
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	2 cut(s)	216, 243
MalI	GATC	4 cut(s)	168, 239, 291, 481
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	4 cut(s)	166, 237, 289, 479
MboII	GAAGA	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	8, 354
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	1 cut(s)	450
MluNI	TGGCCA	1 cut(s)	384
Mly113I	GGCGCC	2 cut(s)	270, 419
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	3 cut(s)	39, 48, 275
Mox20I	TGGCCA	1 cut(s)	384
MroI	TCCGGA	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	2 cut(s)	413, 477
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	53, 171
MwoI	GCNNNNNNNGC	5 cut(s)	56, 326, 418, 427, 463
NarI	GGCGCC	2 cut(s)	270, 419
NdeII	GATC	4 cut(s)	166, 237, 289, 479
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	3 cut(s)	271, 395, 420
PaeR7I	CTCGAG	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	137
PkrI	GCNGC	4 cut(s)	52, 98, 203, 371
PleI	GAGTC	1 cut(s)	20
PluTI	GGCGCC	2 cut(s)	273, 422
PpsI	GAGTC	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	8, 354
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	271, 395, 420
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	2 cut(s)	8, 354
SatI	GCNGC	4 cut(s)	51, 97, 202, 370
Sau3AI	GATC	4 cut(s)	166, 237, 289, 479
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	8, 354
SfaNI	GCATC	1 cut(s)	307
SfoI	GGCGCC	2 cut(s)	271, 420
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	450
SsiI	CCGC	6 cut(s)	51, 97, 148, 202, 209, 369
SspDI	GGCGCC	2 cut(s)	269, 418
SspMI	CTAG	1 cut(s)	311
SstI	GAGCTC	2 cut(s)	8, 354
StyD4I	CCNGG	1 cut(s)	285
TaiI	ACGT	2 cut(s)	219, 246
TaqI	TCGA	3 cut(s)	159, 240, 261
TasI	AATT	1 cut(s)	450
TauI	GCSGC	4 cut(s)	53, 99, 204, 372
Tth111I	GACNNNGTC	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	158
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.