Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008776

Physical Location & Seq

Genomic Coordinates Forward (+)

60317749 .. 60318625

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCTGAAAGGAGCTAAGAAGCACACCATGATTGAGCTCTTGAAATCTTATGGTGGCTTGTCTTATGGCCAAAATGGGAGCCATTTCGAACCGAAGCCAGTGGCGCCTCCTCTGCCAAACAAGTGCGATTGGGAAATTGAGCCTGCTGAGCTTGACTTCTCCGGATCAGTTACCATCGGGGAAGGTCTGAATTTCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Pkinase_Tyr

Protein Analysis

66

Amino Acids

7.21

Weight (kDa)

5.25

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14000
fragaria_vesca	FvH4_4g30780 FvH4_4g30780 FvH4_4g30780
malus_domestica	MD13G1068700.v1.1 MD16G1067500.v1.1 MD16G1067600.v1.1
prunus_persica	Prupe.1G279200_v2.0.a1
pyrus_communis	pycom13g06050 pycom16g05900
rosa_chinensis	RchiOBHm_Chr4g0439171
rosa_laevigata	RLG00000006291
rosa_multiflora	Rmu_sc0002236.1_g000008 Rmu_sc0027506.1_g000011
rosa_roxburghii	Rroxscaffold_5G00380150 Rroxscaffold_5G00380160
rosa_rugosa	Rorug04G0316400
rosa_samantha	Rh4AG367200 Rh4BG378800 Rh4CG393200 Rh4DG373400
rosa_wichuraiana	Rw0G011680 Rw5G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	161
AclWI	GGATC	1 cut(s)	172
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	190
AcyI	GRCGYC	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	43
AluBI	AGCT	3 cut(s)	14, 37, 151
AluI	AGCT	3 cut(s)	14, 37, 151
Alw21I	GWGCWC	1 cut(s)	39
AlwI	GGATC	1 cut(s)	172
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	106
AsuII	TTCGAA	2 cut(s)	87, 195
BalI	TGGCCA	1 cut(s)	69
BanI	GGYRCC	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	1 cut(s)	182
BfoI	RGCGCY	1 cut(s)	107
BlpI	GCTNAGC	1 cut(s)	147
BmiI	GGNNCC	2 cut(s)	80, 105
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	2 cut(s)	87, 195
BsaHI	GRCGYC	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	98
BseAI	TCCGGA	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	162
BsnI	GGCC	1 cut(s)	69
Bsp119I	TTCGAA	2 cut(s)	87, 195
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	1 cut(s)	164
Bsp1720I	GCTNAGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	139
BspEI	TCCGGA	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	80, 105
BspPI	GGATC	1 cut(s)	172
BspT104I	TTCGAA	2 cut(s)	87, 195
BspT107I	GGYRCC	1 cut(s)	103
BsrI	ACTGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	164
BssNI	GRCGYC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	104
BstBI	TTCGAA	2 cut(s)	87, 195
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	2 cut(s)	15, 147
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	167
BstMBI	GATC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 112, 148
BsuRI	GGCC	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	144
CfoI	GCGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	8 cut(s)	14, 37, 57, 69, 81, 97, 142, 151
CviKI_1	RGCY	8 cut(s)	14, 37, 57, 69, 81, 97, 142, 151
DdeI	CTNAG	2 cut(s)	15, 147
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	39
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
FaeI	CATG	1 cut(s)	31
FaiI	YATR	3 cut(s)	29, 51, 66
FatI	CATG	1 cut(s)	27
FriOI	GRGCYC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	40, 162
HpyAV	CCTTC	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 112, 148
HpyF3I	CTNAG	2 cut(s)	15, 147
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	11, 78
LpnPI	CCDG	3 cut(s)	111, 156, 175
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	2 cut(s)	135, 190
MluNI	TGGCCA	1 cut(s)	69
Mly113I	GGCGCC	1 cut(s)	104
MnlI	CCTC	2 cut(s)	117, 120
Mox20I	TGGCCA	1 cut(s)	69
MroI	TCCGGA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	69
MspI	CCGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	103, 112, 148
NarI	GGCGCC	1 cut(s)	104
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	1 cut(s)	31
NlaIV	GGNNCC	2 cut(s)	80, 105
NspV	TTCGAA	2 cut(s)	87, 195
PluTI	GGCGCC	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	80, 105
SacI	GAGCTC	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	4 cut(s)	16, 39, 153, 187
SfoI	GGCGCC	1 cut(s)	105
SfuI	TTCGAA	2 cut(s)	87, 195
SgeI	CNNG	9 cut(s)	40, 52, 70, 110, 133, 155, 164, 174, 190
Sse9I	AATT	2 cut(s)	135, 190
SspDI	GGCGCC	1 cut(s)	103
SstI	GAGCTC	1 cut(s)	39
TaqI	TCGA	2 cut(s)	87, 195
TasI	AATT	2 cut(s)	135, 190
TscAI	CASTG	1 cut(s)	105
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.