Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008776

Physical Location & Seq

Genomic Coordinates Forward (+)

3963613 .. 3967002

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06050.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAGCTCCGACGCTTCCGACTCGTCCGGCGGAGGTAGTGCTTCGACGGCCGACAAGGACAAGCGGAAGGAGAAGGAGAAGGCCCGAGCCAGCACCTCCCTCATGCTCTGGCACGCCCATAACAACGACGGCGTCGCCGTCCGCAAGCTCCTCGAGGAGGATAACTCTCTCGTCCACGCCCACGACTACGACAACCGCACTCCGCTCCACGCCGCCTCGCTCCACGGCTGGATCGACGTCGCCAACTGCCTTATTGAGTATGGCGCCGATGTCAACGCCCAAGATCGCTGGAAGAACACCGTACTTGGCCACAACGGGAGCCATTTCGAACCGAAGCCCGTGCTACCCCCTCTTCCCAGCAAGCGTGATTGGGAGATTGAACCGTCCGAGCTCGACTTCACCAACTCACTTACCATTGGGAAGGGATCGTTTGGTGAGATTTTAAAAGCGCATTGGCGTGGAACCCAAGTAGCTGTCAAGCGAATTCGTTCATCTCTTTCTGGTGATAGAATGGTGATCCAAGACTTCCGGCATGAGGTTGATTTGCTAGTGAAGTTTCATCACCCTAATATAGTCCAATTTCTTGGAGCTGTCACTGAGAAGAAGCCCCTTATGTTAATAACGGAGTATTTAAGAGGGGGTGATCTTCATCAGTACCTCAAGGAAAAGGGTGCACTTAGTCCTACAACAGCAATTAACTTTGCTTTGGATATTGCCAGAGGCATGGCGTATCTTCACAACGAGCCAAATGTTATAGTTCACCGAGACCTAAAACCAAGGAATGTTCTCTTAGTCAATTCCAATGCCGACCATTTAAAAATCGCAGATTTTGGATTAAGCAAGCTCGTCAAGCACCAGAGATATGATAGGAAGGTTGACGTGTTCTCTTTCGCAATGATACTGTACGAGATGCTTGAAGGGAAACAACCACTTTCGGATTACGAGGCTTATGAAGCAGCCAAATATGTGGCGGAAGGACACAGGCCTTCGTTTCATGGAAAAGGGCACACCCCTGAACTGAAGGAGTTAATAGAGCAGTGTTGGTCTGCTGACGTGAACCAAAGGCCTTCCTTCTTGAAGATTATCAAAAGGCTTGAGAAGGTAAAGGAAAAAGTTGTACAAGCAGAACATCATTGGCACATATTTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004712 GO:0004713 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009653 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019538 GO:0023052 GO:0030154 GO:0030435 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0043934 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048646 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Pkinase_Tyr

Protein Analysis

385

Amino Acids

43.47

Weight (kDa)

7.41

Isoelectric Point (pI)

32.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008776)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14000
fragaria_vesca	FvH4_4g30780 FvH4_4g30780 FvH4_4g30780
malus_domestica	MD13G1068700.v1.1 MD16G1067500.v1.1 MD16G1067600.v1.1
prunus_persica	Prupe.1G279200_v2.0.a1
pyrus_communis	pycom13g06050 pycom16g05900
rosa_chinensis	RchiOBHm_Chr4g0439171
rosa_laevigata	RLG00000006291
rosa_multiflora	Rmu_sc0002236.1_g000008 Rmu_sc0027506.1_g000011
rosa_roxburghii	Rroxscaffold_5G00380150 Rroxscaffold_5G00380160
rosa_rugosa	Rorug04G0316400
rosa_samantha	Rh4AG367200 Rh4BG378800 Rh4CG393200 Rh4DG373400
rosa_wichuraiana	Rw0G011680 Rw5G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	240
AbsI	CCTCGAGG	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	7 cut(s)	30, 64, 142, 196, 203, 213, 971
AclWI	GGATC	3 cut(s)	239, 433, 511
AcoI	YGGCCR	2 cut(s)	48, 307
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	1040
AcyI	GRCGYC	3 cut(s)	132, 237, 264
AfaI	GTAC	4 cut(s)	303, 656, 905, 1119
AfiI	CCNNNNNNNGG	2 cut(s)	157, 535
AflIII	ACRYGT	1 cut(s)	879
AgsI	TTSAA	3 cut(s)	380, 917, 1078
AjiI	CACGTC	2 cut(s)	880, 1054
AluBI	AGCT	6 cut(s)	6, 148, 391, 473, 590, 844
AluI	AGCT	6 cut(s)	6, 148, 391, 473, 590, 844
Alw21I	GWGCWC	3 cut(s)	8, 393, 676
Alw26I	GTCTC	1 cut(s)	759
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	3 cut(s)	239, 433, 511
Ama87I	CYCGRG	2 cut(s)	84, 152
AoxI	GGCC	5 cut(s)	48, 81, 307, 983, 1064
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	956
ApoI	RAATTY	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	266, 451
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	7 cut(s)	391, 446, 515, 526, 554, 653, 752
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	2 cut(s)	84, 152
BaeGI	GKGCMC	2 cut(s)	676, 1008
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	2 cut(s)	8, 393
Bbv12I	GWGCWC	3 cut(s)	8, 393, 676
BbvI	GCAGC	1 cut(s)	968
BceAI	ACGGC	4 cut(s)	63, 122, 145, 241
BcgI	CGANNNNNNTGC	4 cut(s)	133, 167, 322, 356
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	548
BfoI	RGCGCY	1 cut(s)	267
BisI	GCNGC	2 cut(s)	213, 957
BlsI	GCNGC	2 cut(s)	214, 958
BmeT110I	CYCGRG	2 cut(s)	84, 152
BmgBI	CACGTC	2 cut(s)	880, 1054
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	265, 320, 463
BmsI	GCATC	1 cut(s)	900
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	2 cut(s)	644, 1115
BsaBI	GATNNNNATC	1 cut(s)	648
BsaHI	GRCGYC	3 cut(s)	132, 237, 264
BsaI	GGTCTC	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	223, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 535
Bse3DI	GCAATG	1 cut(s)	900
Bse8I	GATNNNNATC	1 cut(s)	648
BseDI	CCNNGG	2 cut(s)	223, 776
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	157, 535
BseMI	GCAATG	1 cut(s)	900
BseMII	CTCAG	1 cut(s)	588
BseRI	GAGGAG	2 cut(s)	140, 170
BseSI	GKGCMC	2 cut(s)	676, 1008
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	968
BseYI	CCCAGC	1 cut(s)	356
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	5 cut(s)	50, 83, 309, 985, 1066
BshNI	GGYRCC	1 cut(s)	263
BsiEI	CGRYCG	1 cut(s)	51
BsiHKAI	GWGCWC	3 cut(s)	8, 393, 676
BsiHKCI	CYCGRG	2 cut(s)	84, 152
BsiSI	CCGG	2 cut(s)	27, 529
BslI	CCNNNNNNNGG	2 cut(s)	157, 535
BsmAI	GTCTC	1 cut(s)	759
BsnI	GGCC	5 cut(s)	50, 83, 309, 985, 1066
Bso31I	GGTCTC	1 cut(s)	759
BsoBI	CYCGRG	2 cut(s)	84, 152
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	4 cut(s)	8, 393, 676, 1008
Bsp1407I	TGTACA	1 cut(s)	1117
Bsp143I	GATC	5 cut(s)	231, 283, 425, 516, 643
BspACI	CCGC	7 cut(s)	30, 64, 142, 196, 203, 213, 971
BspANI	GGCC	5 cut(s)	50, 83, 309, 985, 1066
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	265, 320, 463
BspPI	GGATC	3 cut(s)	239, 433, 511
BspT104I	TTCGAA	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	759
BsrBI	CCGCTC	1 cut(s)	205
BsrDI	GCAATG	1 cut(s)	900
BsrGI	TGTACA	1 cut(s)	1117
BssECI	CCNNGG	2 cut(s)	223, 776
BssMI	GATC	5 cut(s)	231, 283, 425, 516, 643
BssNI	GRCGYC	3 cut(s)	132, 237, 264
BssT1I	CCWWGG	1 cut(s)	776
Bst4CI	ACNGT	3 cut(s)	301, 384, 903
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	3 cut(s)	132, 237, 264
BstAUI	TGTACA	1 cut(s)	1117
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	5 cut(s)	91, 114, 146, 362, 842
BstDEI	CTNAG	3 cut(s)	597, 677, 790
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	266, 451
BstKTI	GATC	5 cut(s)	234, 286, 428, 519, 646
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	5 cut(s)	231, 283, 425, 516, 643
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 850, 953
BstSLI	GKGCMC	2 cut(s)	676, 1008
BstV1I	GCAGC	1 cut(s)	968
BstXI	CCANNNNNNTGG	3 cut(s)	584, 724, 967
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	5 cut(s)	50, 83, 309, 985, 1066
BtgI	CCRYGG	1 cut(s)	223
BtrI	CACGTC	2 cut(s)	880, 1054
BtsI	GCAGTG	1 cut(s)	1043
BtsIMutI	CAGTG	2 cut(s)	594, 1043
Cac8I	GCNNGC	5 cut(s)	91, 114, 146, 362, 842
CfoI	GCGC	2 cut(s)	266, 451
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	2 cut(s)	20, 121
Csp6I	GTAC	4 cut(s)	302, 655, 904, 1118
CviAII	CATG	4 cut(s)	103, 533, 724, 995
CviQI	GTAC	4 cut(s)	302, 655, 904, 1118
DdeI	CTNAG	3 cut(s)	597, 677, 790
DinI	GGCGCC	1 cut(s)	265
DpnI	GATC	5 cut(s)	233, 285, 427, 518, 645
DpnII	GATC	5 cut(s)	231, 283, 425, 516, 643
DraI	TTTAAA	2 cut(s)	444, 816
EaeI	YGGCCR	2 cut(s)	48, 307
EagI	CGGCCG	1 cut(s)	48
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
EciI	GGCGGA	2 cut(s)	45, 986
Ecl136II	GAGCTC	2 cut(s)	6, 391
EclXI	CGGCCG	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	776
Eco147I	AGGCCT	2 cut(s)	985, 1066
Eco24I	GRGCYC	2 cut(s)	8, 393
Eco31I	GGTCTC	1 cut(s)	759
Eco52I	CGGCCG	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	6, 391
Eco57I	CTGAAG	1 cut(s)	1040
Eco88I	CYCGRG	2 cut(s)	84, 152
EcoICRI	GAGCTC	2 cut(s)	6, 391
EcoNI	CCTNNNNNAGG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	776
EcoT22I	ATGCAT	1 cut(s)	1153
EcoT38I	GRGCYC	2 cut(s)	8, 393
EgeI	GGCGCC	1 cut(s)	265
EheI	GGCGCC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	776
FaeI	CATG	4 cut(s)	106, 536, 727, 998
FatI	CATG	4 cut(s)	102, 532, 723, 994
Fnu4HI	GCNGC	2 cut(s)	213, 957
FriOI	GRGCYC	2 cut(s)	8, 393
Fsp4HI	GCNGC	2 cut(s)	213, 957
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	2 cut(s)	265, 450
GluI	GCNGC	2 cut(s)	213, 957
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	5 cut(s)	50, 83, 309, 985, 1066
HapII	CCGG	2 cut(s)	27, 529
HgaI	GACGC	2 cut(s)	20, 121
HhaI	GCGC	2 cut(s)	266, 451
Hin1I	GRCGYC	3 cut(s)	132, 237, 264
Hin1II	CATG	4 cut(s)	106, 536, 727, 998
Hin6I	GCGC	2 cut(s)	264, 449
HinP1I	GCGC	2 cut(s)	264, 449
HincII	GTYRAC	2 cut(s)	274, 877
HindII	GTYRAC	2 cut(s)	274, 877
HinfI	GANTC	1 cut(s)	20
HpaII	CCGG	2 cut(s)	27, 529
HphI	GGTGA	7 cut(s)	391, 446, 515, 526, 554, 653, 752
Hpy166II	GTNNAC	6 cut(s)	175, 274, 674, 760, 877, 1057
Hpy188I	TCNGA	4 cut(s)	10, 19, 388, 937
Hpy188III	TCNNGA	1 cut(s)	1075
Hpy8I	GTNNAC	6 cut(s)	175, 274, 674, 760, 877, 1057
Hpy99I	CGWCG	6 cut(s)	14, 49, 131, 137, 239, 242
HpyCH4III	ACNGT	3 cut(s)	301, 384, 903
HpyCH4IV	ACGT	3 cut(s)	237, 879, 1053
HpyCH4V	TGCA	2 cut(s)	674, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 850, 953
HpyF3I	CTNAG	3 cut(s)	597, 677, 790
HpySE526I	ACGT	3 cut(s)	237, 879, 1053
Hsp92I	GRCGYC	3 cut(s)	132, 237, 264
Hsp92II	CATG	4 cut(s)	106, 536, 727, 998
HspAI	GCGC	2 cut(s)	264, 449
KasI	GGCGCC	1 cut(s)	263
Kzo9I	GATC	5 cut(s)	231, 283, 425, 516, 643
LmnI	GCTCC	6 cut(s)	11, 153, 210, 225, 318, 587
Lsp1109I	GCAGC	1 cut(s)	968
LweI	GCATC	1 cut(s)	900
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	3 cut(s)	237, 879, 1053
MaeIII	GTNAC	1 cut(s)	592
MalI	GATC	5 cut(s)	233, 285, 427, 518, 645
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	5 cut(s)	231, 283, 425, 516, 643
MboII	GAAGA	6 cut(s)	304, 344, 613, 638, 725, 1090
MhlI	GDGCHC	4 cut(s)	8, 393, 676, 1008
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	4 cut(s)	483, 578, 693, 796
MluNI	TGGCCA	1 cut(s)	309
Mly113I	GGCGCC	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	33, 42
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	1153
MroXI	GAANNNNTTC	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	309
MseI	TTAA	8 cut(s)	443, 617, 632, 696, 815, 836, 1028, 1146
MslI	CAYNNNNRTG	1 cut(s)	456
Msp20I	TGGCCA	1 cut(s)	309
MspI	CCGG	2 cut(s)	27, 529
MwoI	GCNNNNNNNGC	3 cut(s)	47, 850, 953
NarI	GGCGCC	1 cut(s)	264
NdeII	GATC	5 cut(s)	231, 283, 425, 516, 643
NlaIII	CATG	4 cut(s)	106, 536, 727, 998
NlaIV	GGNNCC	3 cut(s)	265, 320, 463
NmuCI	GTSAC	1 cut(s)	592
NsiI	ATGCAT	1 cut(s)	1153
NspV	TTCGAA	1 cut(s)	327
PaeR7I	CTCGAG	1 cut(s)	152
PceI	AGGCCT	2 cut(s)	985, 1066
PcsI	WCGNNNNNNNCGW	2 cut(s)	135, 231
PdmI	GAANNNNTTC	1 cut(s)	487
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	214, 958
PleI	GAGTC	1 cut(s)	14
PluTI	GGCGCC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	14
Psp124BI	GAGCTC	2 cut(s)	8, 393
PspFI	CCCAGC	1 cut(s)	356
PspN4I	GGNNCC	3 cut(s)	265, 320, 463
PspPI	GGNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	131
RsaI	GTAC	4 cut(s)	303, 656, 905, 1119
RsaNI	GTAC	4 cut(s)	302, 655, 904, 1118
RseI	CAYNNNNRTG	1 cut(s)	456
SacI	GAGCTC	2 cut(s)	8, 393
SaqAI	TTAA	8 cut(s)	443, 617, 632, 696, 815, 836, 1028, 1146
SatI	GCNGC	2 cut(s)	213, 957
Sau3AI	GATC	5 cut(s)	231, 283, 425, 516, 643
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	14
SduI	GDGCHC	4 cut(s)	8, 393, 676, 1008
SfaNI	GCATC	1 cut(s)	900
SfoI	GGCGCC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	327
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	456
SmlI	CTYRAG	3 cut(s)	152, 659, 1094
SmoI	CTYRAG	3 cut(s)	152, 659, 1094
Sse9I	AATT	4 cut(s)	483, 578, 693, 796
SseBI	AGGCCT	2 cut(s)	985, 1066
SsiI	CCGC	7 cut(s)	30, 64, 142, 196, 203, 213, 971
SspDI	GGCGCC	1 cut(s)	263
SspMI	CTAG	1 cut(s)	548
SstI	GAGCTC	2 cut(s)	8, 393
StuI	AGGCCT	2 cut(s)	985, 1066
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	3 cut(s)	301, 384, 903
TaiI	ACGT	3 cut(s)	240, 882, 1056
TaqI	TCGA	5 cut(s)	44, 153, 234, 327, 393
TasI	AATT	4 cut(s)	483, 578, 693, 796
TatI	WGTACW	1 cut(s)	1117
TauI	GCSGC	1 cut(s)	215
Tru1I	TTAA	8 cut(s)	443, 617, 632, 696, 815, 836, 1028, 1146
Tru9I	TTAA	8 cut(s)	443, 617, 632, 696, 815, 836, 1028, 1146
TscAI	CASTG	2 cut(s)	601, 1043
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	956
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	5 cut(s)	480, 548, 638, 966, 983
TspGWI	ACGGA	1 cut(s)	638
TspRI	CASTG	2 cut(s)	601, 1043
Tth111I	GACNNNGTC	1 cut(s)	131
VneI	GTGCAC	1 cut(s)	672
XagI	CCTNNNNNAGG	1 cut(s)	155
XapI	RAATTY	1 cut(s)	483
XhoI	CTCGAG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	238
Zsp2I	ATGCAT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.