Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

49072890 .. 49075046

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGCATCAATTGAAGGAGCTGATGGGGAAGAGGAGCAGACTTTCTGCTGAAGGAGTCGAAACAGAAGATTATGTTCGTGTCAAGGCAAGAAGGGGTGAAGCAACCGACAGTCACAGCCTAGCGGAAAGGGCAAGAAGAGCGCAAATCCGAATGAGAATGAAACTCTTGCAATCACTTGTTCCTGGATGCGATAAGATAACTGGAAAGGCACATATACTGGATGAGATTATCAAATATGTTCAATTGCTACAGAATCAAGTAGAGTCCCTTGCGGCAAAGCTTGCTTTTGTGGATCTCATGCTATACGACTGTGAGCCGAATGCAAGCGGAAATGCATGTGTTCCTGAGGGGCTGTTGCCGTCTGTGCCAGAGTCTAGCTCTATCCCGTTCATGTCTTTTGCAGACGGTGGGGTAAGCCATTCTGCTTCCCTTTTGCTCAAAGAGGATCAGATAGCTACTCTAATCCCTCAGGCAAACGATAAACATCAAGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

166

Amino Acids

18.31

Weight (kDa)

6.21

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	38 - 85	4.5e-08	Helix-loop-helix DNA-binding domain
bHLH_SAC51	PF23173	43 - 90	9.3e-07	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	125, 275, 330
AclWI	GGATC	2 cut(s)	303, 456
AcuI	CTGAAG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	16, 245
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	4 cut(s)	22, 283, 381, 458
AluI	AGCT	4 cut(s)	22, 283, 381, 458
AlwI	GGATC	2 cut(s)	303, 456
AspLEI	GCGC	1 cut(s)	145
AsuHPI	GGTGA	1 cut(s)	110
AxyI	CCTNAGG	2 cut(s)	348, 471
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	186
BfaI	CTAG	2 cut(s)	122, 378
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	186
BmsI	GCATC	2 cut(s)	16, 179
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BsaBI	GATNNNNATC	1 cut(s)	486
Bse1I	ACTGG	2 cut(s)	208, 225
Bse21I	CCTNAGG	2 cut(s)	348, 471
Bse8I	GATNNNNATC	1 cut(s)	486
BseBI	CCWGG	1 cut(s)	186
BseGI	GGATG	2 cut(s)	194, 229
BseJI	GATNNNNATC	1 cut(s)	486
BseMII	CTCAG	2 cut(s)	339, 485
BseNI	ACTGG	2 cut(s)	208, 225
BseRI	GAGGAG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	295, 448
BspACI	CCGC	3 cut(s)	125, 275, 330
BspCNI	CTCAG	2 cut(s)	340, 484
BspPI	GGATC	2 cut(s)	303, 456
BspQI	GCTCTTC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	208, 225
BssMI	GATC	2 cut(s)	295, 448
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	113, 314, 410
Bst6I	CTCTTC	2 cut(s)	26, 133
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	285, 328
BstDEI	CTNAG	2 cut(s)	348, 471
BstF5I	GGATG	2 cut(s)	194, 229
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	2 cut(s)	298, 451
BstMBI	GATC	2 cut(s)	295, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 367
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	251
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
Bsu36I	CCTNAGG	2 cut(s)	348, 471
BtsCI	GGATG	2 cut(s)	194, 229
Cac8I	GCNNGC	2 cut(s)	285, 328
CfoI	GCGC	1 cut(s)	145
CviAII	CATG	3 cut(s)	301, 339, 394
CviJI	RGCY	8 cut(s)	22, 120, 283, 319, 355, 381, 420, 458
CviKI_1	RGCY	8 cut(s)	22, 120, 283, 319, 355, 381, 420, 458
DdeI	CTNAG	2 cut(s)	348, 471
DpnI	GATC	2 cut(s)	297, 450
DpnII	GATC	2 cut(s)	295, 448
Eam1104I	CTCTTC	2 cut(s)	26, 133
EarI	CTCTTC	2 cut(s)	26, 133
Eco57I	CTGAAG	1 cut(s)	72
Eco81I	CCTNAGG	2 cut(s)	348, 471
EcoRII	CCWGG	1 cut(s)	184
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	3 cut(s)	304, 342, 397
FaiI	YATR	8 cut(s)	75, 216, 218, 240, 302, 307, 340, 395
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	3 cut(s)	300, 338, 393
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	201, 236
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	122, 378
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	304, 342, 397
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	4 cut(s)	57, 256, 266, 374
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	152, 453
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	10, 47, 87
HpyCH4III	ACNGT	3 cut(s)	113, 314, 410
HpyCH4V	TGCA	4 cut(s)	172, 326, 338, 404
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 367
HpyF3I	CTNAG	2 cut(s)	348, 471
Hsp92II	CATG	3 cut(s)	304, 342, 397
HspAI	GCGC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	295, 448
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	3 cut(s)	4, 19, 36
LpnPI	CCDG	7 cut(s)	171, 189, 198, 206, 360, 384, 458
LweI	GCATC	2 cut(s)	16, 179
MaeI	CTAG	2 cut(s)	122, 378
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	2 cut(s)	297, 450
MboI	GATC	2 cut(s)	295, 448
MboII	GAAGA	3 cut(s)	43, 80, 150
MfeI	CAATTG	2 cut(s)	11, 245
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	2 cut(s)	11, 245
MlyI	GAGTC	3 cut(s)	66, 275, 383
MnlI	CCTC	4 cut(s)	27, 343, 439, 480
Mph1103I	ATGCAT	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	2 cut(s)	11, 245
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	131, 140, 284, 367
NdeII	GATC	2 cut(s)	295, 448
NlaIII	CATG	3 cut(s)	304, 342, 397
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	342
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	277
PleI	GAGTC	3 cut(s)	65, 274, 382
PpsI	GAGTC	3 cut(s)	65, 274, 382
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	2 cut(s)	295, 448
SchI	GAGTC	3 cut(s)	66, 275, 383
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	4 cut(s)	24, 285, 383, 460
SfaNI	GCATC	2 cut(s)	16, 179
SfcI	CTRYAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	11, 245
SsiI	CCGC	3 cut(s)	125, 275, 330
SspMI	CTAG	2 cut(s)	122, 378
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	113, 314, 410
TaqI	TCGA	1 cut(s)	60
TasI	AATT	2 cut(s)	11, 245
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	176, 382
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	2 cut(s)	122, 378
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.