Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

84937711 .. 84939476

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG619500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGGTTTCGATGCGGTTCGACCTTCAATCTGGCGCCACTAAATGCATCTCAGACGAAATAAAGAGCAATTCCATGACTGTGGGAAAGTACTCCACCGTCAATCCCAATGAGGGCTTTCCTCTTCCTGATACGCACAAAGTCACTGTCAGGATGATGGAACTCGAGCTGAAAAAGCTGTTTGATACTGTGACGTCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAATAGAGCAACTAACTCCAAGATGGCGACGTTTAGCTTCCTTTCTCTTGTAGTTTGCTTGTCTGTGGCCGGTTTGCAATTATGGCATCTGAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

124

Amino Acids

14.35

Weight (kDa)

7.79

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	47 - 119	9.7e-20	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	35
AciI	CCGC	2 cut(s)	5, 16
AcoI	YGGCCR	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	2 cut(s)	36, 194
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	29
AluBI	AGCT	4 cut(s)	169, 178, 288, 367
AluI	AGCT	4 cut(s)	169, 178, 288, 367
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	318
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	35
BccI	CCATC	2 cut(s)	151, 268
BfaI	CTAG	1 cut(s)	373
BfoI	RGCGCY	1 cut(s)	39
BmcAI	AGTACT	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	3 cut(s)	3, 57, 346
BsaHI	GRCGYC	2 cut(s)	36, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	320
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	113
BsnI	GGCC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	164
BspACI	CCGC	2 cut(s)	5, 16
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssNI	GRCGYC	2 cut(s)	36, 194
Bst4CI	ACNGT	4 cut(s)	82, 100, 148, 190
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	36, 194
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 334
BstXI	CCANNNNNNTGG	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	144
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	2 cut(s)	76, 203
CviJI	RGCY	6 cut(s)	117, 169, 178, 288, 320, 367
CviKI_1	RGCY	6 cut(s)	117, 169, 178, 288, 320, 367
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	52
DinI	GGCGCC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
FaeI	CATG	2 cut(s)	79, 206
FaiI	YATR	3 cut(s)	77, 204, 334
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FatI	CATG	2 cut(s)	75, 202
FokI	GGATG	1 cut(s)	166
FspBI	CTAG	1 cut(s)	373
GlaI	GCGC	1 cut(s)	37
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	1 cut(s)	321
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	2 cut(s)	36, 194
Hin1II	CATG	2 cut(s)	79, 206
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	321
Hpy188I	TCNGA	2 cut(s)	55, 342
Hpy188III	TCNNGA	4 cut(s)	128, 151, 203, 224
Hpy99I	CGWCG	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	4 cut(s)	82, 100, 148, 190
HpyCH4IV	ACGT	2 cut(s)	194, 281
HpyCH4V	TGCA	3 cut(s)	48, 244, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 334
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	2 cut(s)	194, 281
Hsp92I	GRCGYC	2 cut(s)	36, 194
Hsp92II	CATG	2 cut(s)	79, 206
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	4 cut(s)	18, 136, 141, 334
LweI	GCATC	3 cut(s)	3, 57, 346
MaeI	CTAG	1 cut(s)	373
MaeII	ACGT	2 cut(s)	194, 281
MaeIII	GTNAC	2 cut(s)	142, 190
MboII	GAAGA	5 cut(s)	116, 212, 248, 355, 373
MluCI	AATT	2 cut(s)	70, 329
Mly113I	GGCGCC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	106, 132, 226, 351
Mph1103I	ATGCAT	1 cut(s)	50
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	252
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	175, 334
NarI	GGCGCC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	79, 206
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	2 cut(s)	142, 190
NsiI	ATGCAT	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	164
PagI	TCATGA	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	347
PluTI	GGCGCC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	37
PspXI	VCTCGAGB	1 cut(s)	164
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	252
ScaI	AGTACT	1 cut(s)	92
SetI	ASST	7 cut(s)	27, 171, 180, 197, 284, 290, 369
SfaNI	GCATC	3 cut(s)	3, 57, 346
SfoI	GGCGCC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	70, 329
SsiI	CCGC	2 cut(s)	5, 16
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	373
TaaI	ACNGT	4 cut(s)	82, 100, 148, 190
TaiI	ACGT	2 cut(s)	197, 284
TaqI	TCGA	3 cut(s)	11, 21, 165
TasI	AATT	2 cut(s)	70, 329
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	2 cut(s)	142, 190
Tsp45I	GTSAC	2 cut(s)	142, 190
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	373
ZraI	GACGTC	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.