pycom13g06060

Transmembrane emp24 domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
3967145 .. 3967339
195 bp
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UTR
Exon/CDS
Intron
pycom13g06060.1

Sequence Viewer

Length: 195 bp
ATGTCAATCGTTTGTTCATTTATATGTTGTCTGCTCAATGCGTGTTTCAGGGAAGGAGAGATGCAGGATCTTAACAGAGCGACAAACTCGAAAATGGCCTGGCTGAGCCTTCTTTCGCTTATTGTTTGCTTATCAGTCGCGGGTTTGCAAGTGTGGCACCTGAAGACATTTTTCGAGAAGAAGAAGGTTATATAA

Protein Analysis

65

Amino Acids

7.28

Weight (kDa)

8.74

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMP24_GP25L PF01105 17 - 59 4.7e-12 emp24/gp25L/p24 family/GOLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AclWI GGATC 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 182
AjnI CCWGG 1 cut(s) 98
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 96
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 100
BlpI GCTNAGC 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 104
BseBI CCWGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 156
BsnI GGCC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 67
Bsp1720I GCTNAGC 1 cut(s) 104
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 96
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 156
BssMI GATC 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 100
BstDEI CTNAG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 70
BstMBI GATC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 140
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BsuRI GGCC 1 cut(s) 98
CviJI RGCY 3 cut(s) 98, 103, 108
CviKI_1 RGCY 3 cut(s) 98, 103, 108
DdeI CTNAG 1 cut(s) 104
DpnI GATC 1 cut(s) 69
DpnII GATC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 98
FaiI YATR 4 cut(s) 23, 25, 191, 193
FauI CCCGC 1 cut(s) 133
HaeIII GGCC 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 47, 119, 178
HpyCH4V TGCA 2 cut(s) 64, 148
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 67
LpnPI CCDG 5 cut(s) 34, 50, 85, 112, 173
LweI GCATC 1 cut(s) 51
MalI GATC 1 cut(s) 69
MboI GATC 1 cut(s) 67
MboII GAAGA 3 cut(s) 175, 190, 193
MflI RGATCY 1 cut(s) 67
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 22
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 154
NdeII GATC 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 22
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 100
SetI ASST 2 cut(s) 162, 189
SfaNI GCATC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 22
SsiI CCGC 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 98
TaqI TCGA 2 cut(s) 89, 174
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.