Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

60322397 .. 60324110

Gene Structure 1714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTTGAATTGCGTTTACTGGTTGCTGCTGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTCTCCGGTTCGAGCTCCAATCGGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCGTCGGAAAGTACTCCGTCGTCAACCCCGACGAAGGCCAGCCCCTGCCGCCCTCACACAAGCTCACCGTTCGGGTGACTTCGAGCTATGGGAATAGCCATCACTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGCGATTACATGGCGTGTTTCTGGGCCCCCGATCACAAGCCCCTGACCACGTTGACCATCGAGTTTGATTGGAAGACGGGTGTGGCGGCCAAGGACTGGTCCAATGTGGCCAAGAAAGGCTCTGTCGATGTCATGGAATTAGAGCTTAAGAAGTTGTACGACACTGTTACTTCAATTCACGAGGAGATGACCTACCTCCGTGAACGGGAAGAAGAAATGCAGGATCTTAATAGAGCAACCAACTCCAAAATGGCCTGGTTGAGTTTTCTTTCGCTTTTTATTTGCTTATCGGTGGCAGGTTTGCAATGGTGGCACTTGAAGACCTTTTTCCAGAAAAAGAAGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

213

Amino Acids

24.2

Weight (kDa)

6.17

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	24 - 208	1.2e-50	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	578
AccB7I	CCANNNNNTGG	1 cut(s)	387
AciI	CCGC	3 cut(s)	185, 281, 377
AclWI	GGATC	2 cut(s)	31, 522
AcoI	YGGCCR	2 cut(s)	378, 399
AfaI	GTAC	2 cut(s)	149, 449
AfiI	CCNNNNNNNGG	3 cut(s)	170, 387, 496
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	8, 465, 610
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	6 cut(s)	82, 199, 222, 250, 436, 634
AluI	AGCT	6 cut(s)	82, 199, 222, 250, 436, 634
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	31, 522
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	7 cut(s)	123, 172, 288, 315, 378, 399, 543
ApaI	GGGCCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspA2I	CCTAGG	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	315, 316, 390
AsuHPI	GGTGA	2 cut(s)	193, 223
AvaII	GGWCC	1 cut(s)	390
AvrII	CCTAGG	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	319
BalI	TGGCCA	1 cut(s)	401
BanII	GRGCYC	2 cut(s)	84, 319
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	3 cut(s)	120, 371, 617
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	2 cut(s)	243, 356
BciT130I	CCWGG	1 cut(s)	547
BfaI	CTAG	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	578
BisI	GCNGC	4 cut(s)	27, 30, 185, 378
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	28, 31, 186, 379
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	547
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	3 cut(s)	315, 316, 390
BmiI	GGNNCC	2 cut(s)	317, 318
BmrFI	CCNGG	1 cut(s)	547
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	3 cut(s)	120, 371, 617
BsaJI	CCNNGG	2 cut(s)	40, 381
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 387, 496
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	24, 392
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	40, 381
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	3 cut(s)	170, 387, 496
BseMI	GCAATG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	24, 392
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	7 cut(s)	125, 174, 290, 317, 380, 401, 545
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	73, 291
BslI	CCNNNNNNNGG	3 cut(s)	170, 387, 496
BsnI	GGCC	7 cut(s)	125, 174, 290, 317, 380, 401, 545
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	84, 319
Bsp143I	GATC	3 cut(s)	36, 322, 514
BspACI	CCGC	3 cut(s)	185, 281, 377
BspANI	GGCC	7 cut(s)	125, 174, 290, 317, 380, 401, 545
BspLI	GGNNCC	2 cut(s)	317, 318
BspMI	ACCTGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	31, 522
BspTI	CTTAAG	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	2 cut(s)	24, 392
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	40, 381
BssMI	GATC	3 cut(s)	36, 322, 514
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	40, 381
Bst2BI	CACGAG	1 cut(s)	470
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	139, 205, 457
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	2 cut(s)	176, 292
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	39, 325, 517
BstMBI	GATC	3 cut(s)	36, 322, 514
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 278, 287, 601
BstNI	CCWGG	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	545
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	3 cut(s)	120, 371, 617
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	7 cut(s)	125, 174, 290, 317, 380, 401, 545
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	453
BveI	ACCTGC	1 cut(s)	578
Cac8I	GCNNGC	2 cut(s)	176, 292
CaiI	CAGNNNCTG	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	3 cut(s)	315, 316, 390
Csp6I	GTAC	2 cut(s)	148, 448
CviAII	CATG	4 cut(s)	118, 133, 301, 424
CviQI	GTAC	2 cut(s)	148, 448
DpnI	GATC	3 cut(s)	38, 324, 516
DpnII	GATC	3 cut(s)	36, 322, 514
EaeI	YGGCCR	2 cut(s)	378, 399
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	40, 381
Eco24I	GRGCYC	2 cut(s)	84, 319
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	40, 381
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	2 cut(s)	84, 319
ErhI	CCWWGG	2 cut(s)	40, 381
FaeI	CATG	4 cut(s)	121, 136, 304, 427
FaiI	YATR	5 cut(s)	119, 134, 225, 302, 425
FatI	CATG	4 cut(s)	117, 132, 300, 423
Fnu4HI	GCNGC	4 cut(s)	27, 30, 185, 378
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	2 cut(s)	84, 319
Fsp4HI	GCNGC	4 cut(s)	27, 30, 185, 378
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	4 cut(s)	27, 30, 185, 378
HaeIII	GGCC	7 cut(s)	125, 174, 290, 317, 380, 401, 545
HapII	CCGG	2 cut(s)	73, 291
Hin1II	CATG	4 cut(s)	121, 136, 304, 427
HincII	GTYRAC	2 cut(s)	160, 345
HindII	GTYRAC	2 cut(s)	160, 345
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	73, 291
HphI	GGTGA	2 cut(s)	193, 223
Hpy166II	GTNNAC	4 cut(s)	17, 160, 345, 494
Hpy188I	TCNGA	2 cut(s)	143, 247
Hpy188III	TCNNGA	2 cut(s)	470, 622
Hpy8I	GTNNAC	4 cut(s)	17, 160, 345, 494
Hpy99I	CGWCG	4 cut(s)	113, 143, 158, 170
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	3 cut(s)	139, 205, 457
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	3 cut(s)	105, 511, 595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 278, 287, 601
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	121, 136, 304, 427
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	36, 322, 514
LmnI	GCTCC	2 cut(s)	87, 247
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	92, 211, 457
MalI	GATC	3 cut(s)	38, 324, 516
MboI	GATC	3 cut(s)	36, 322, 514
MboII	GAAGA	5 cut(s)	125, 376, 512, 515, 622
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	84, 319
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	8, 428, 465
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	199, 280, 466, 497
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	107
MroNI	GCCGGC	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	438, 519
Msp20I	TGGCCA	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	2 cut(s)	73, 291
MspR9I	CCNGG	1 cut(s)	547
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	4 cut(s)	184, 278, 287, 601
NaeI	GCCGGC	1 cut(s)	292
NdeII	GATC	3 cut(s)	36, 322, 514
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	121, 136, 304, 427
NlaIV	GGNNCC	2 cut(s)	317, 318
NmuCI	GTSAC	2 cut(s)	92, 211
NsiI	ATGCAT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	28, 31, 186, 379
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	317, 318
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	3 cut(s)	315, 316, 390
PstNI	CAGNNNCTG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	2 cut(s)	149, 449
RsaNI	GTAC	2 cut(s)	148, 448
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	438, 519
SatI	GCNGC	4 cut(s)	27, 30, 185, 378
Sau3AI	GATC	3 cut(s)	36, 322, 514
Sau96I	GGNCC	3 cut(s)	315, 316, 390
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	547
SduI	GDGCHC	2 cut(s)	84, 319
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	8, 428, 465
SsiI	CCGC	3 cut(s)	185, 281, 377
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	545
StyI	CCWWGG	2 cut(s)	40, 381
TaaI	ACNGT	3 cut(s)	139, 205, 457
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	78, 111, 218, 351, 417
TasI	AATT	3 cut(s)	8, 428, 465
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	187, 380
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	438, 519
Tru9I	TTAA	2 cut(s)	438, 519
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	92, 211
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	92, 211
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	142, 479
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	387
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	390
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.