Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

3425727 .. 3427275

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04930.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTGGAGTCGGGTAATTTTGCGTTTACTGCTGCAGAGACTGGTGATTATTCAGCTTGCTTTTGGGTGTCGGATCGATCATAAGCCCTCAACGACGGTGACGATTGATTTTGACTGGAAAACTGGTGTTGCTGCTAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAAATTGAAACGATGGAACTTGAGCTGAAAAAATTGTACGATACTGTGTCATCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGGAATGCAACAACTTAATCGATCAACTAACTCCAAGATGGCGGTTTTTAGCGGGCTTTCGCTTTTTGTATGCCTGTCAGTGGCTGGTTTGCAACTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

132

Amino Acids

15.31

Weight (kDa)

9.51

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 309
AclWI	GGATC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	162, 337
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	3 cut(s)	55, 190, 388
AluI	AGCT	3 cut(s)	55, 190, 388
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	2 cut(s)	40, 341
ApeKI	GCWGC	2 cut(s)	31, 131
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	55, 109
AvaII	GGWCC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	18, 118
BccI	CCATC	2 cut(s)	172, 289
BcoDI	GTCTC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	394
BfmI	CTRYAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	32, 132
BlsI	GCNGC	2 cut(s)	33, 133
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmsI	GCATC	1 cut(s)	367
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	206, 347
Bsa29I	ATCGAT	2 cut(s)	75, 277
BsaJI	CCNNGG	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 337
Bse1I	ACTGG	4 cut(s)	45, 119, 127, 146
BseCI	ATCGAT	2 cut(s)	75, 277
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	215
BseLI	CCNNNNNNNGG	2 cut(s)	162, 337
BseNI	ACTGG	4 cut(s)	45, 119, 127, 146
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	18, 118
BshVI	ATCGAT	2 cut(s)	75, 277
BslI	CCNNNNNNNGG	2 cut(s)	162, 337
BsmAI	GTCTC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	72, 76, 278
BspACI	CCGC	2 cut(s)	299, 309
BspDI	ATCGAT	2 cut(s)	75, 277
BspHI	TCATGA	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	80
BsrI	ACTGG	4 cut(s)	45, 119, 127, 146
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	3 cut(s)	72, 76, 278
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	97, 211
BstC8I	GCNNGC	2 cut(s)	57, 311
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	215
BstKTI	GATC	3 cut(s)	75, 79, 281
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	3 cut(s)	72, 76, 278
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 355
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	18, 118
Bsu15I	ATCGAT	2 cut(s)	75, 277
BsuTUI	ATCGAT	2 cut(s)	75, 277
BtsCI	GGATG	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	57, 311
CaiI	CAGNNNCTG	2 cut(s)	40, 341
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	2 cut(s)	75, 277
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	6 cut(s)	55, 85, 190, 313, 341, 388
CviKI_1	RGCY	6 cut(s)	55, 85, 190, 313, 341, 388
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	3 cut(s)	74, 78, 280
DpnII	GATC	3 cut(s)	72, 76, 278
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	227
FaiI	YATR	4 cut(s)	81, 225, 328, 355
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	1 cut(s)	223
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	32, 132
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	32, 132
FspBI	CTAG	1 cut(s)	394
GluI	GCNGC	2 cut(s)	32, 132
Hin1II	CATG	1 cut(s)	227
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	55, 109
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	224, 245, 364
Hpy8I	GTNNAC	1 cut(s)	26
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	97, 211
HpyCH4V	TGCA	3 cut(s)	34, 265, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 355
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	227
Kzo9I	GATC	3 cut(s)	72, 76, 278
LmnI	GCTCC	1 cut(s)	393
LpnPI	CCDG	6 cut(s)	26, 100, 108, 127, 327, 344
Lsp1109I	GCAGC	2 cut(s)	18, 118
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	74, 78, 280
MboI	GATC	3 cut(s)	72, 76, 278
MboII	GAAGA	2 cut(s)	233, 394
MluCI	AATT	3 cut(s)	15, 168, 197
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	97, 247, 372
MseI	TTAA	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	28, 355
NdeII	GATC	3 cut(s)	72, 76, 278
NlaIII	CATG	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	97
PagI	TCATGA	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PctI	GAATGC	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	33, 133
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	36
PstNI	CAGNNNCTG	2 cut(s)	40, 341
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	2 cut(s)	32, 132
Sau3AI	GATC	3 cut(s)	72, 76, 278
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	1 cut(s)	16
SetI	ASST	4 cut(s)	57, 153, 192, 390
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	185, 362
SmoI	CTYRAG	2 cut(s)	185, 362
Sse9I	AATT	3 cut(s)	15, 168, 197
SsiI	CCGC	2 cut(s)	299, 309
SspMI	CTAG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	97, 211
TaqI	TCGA	2 cut(s)	75, 277
TasI	AATT	3 cut(s)	15, 168, 197
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	2 cut(s)	31, 131
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	144
XspI	CTAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.