Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

80494653 .. 80495178

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022059

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTTGAATTGCGTTTACTAGTCGCTGCTGCTATGATCAGAGGGTTTCTATTCTCCACATCCCAATCTCTCCACTTTGAGCTCCAATCGGGTCACACCAAATGCATCATAGAAGACATGAAGGCCAATGCCATGACCGTCGGAAAGTACTCCGTCGTCAACCCCGACGAAGGCCAGCCCTTGCCACCCTCACACAAGCTCACCGTTCGGGTGACTTCGAGCTATGGGAATAGCCATCACTACCCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGTGCCCGATCACAAGCCCCCAACGACGTTGACCATTGAGTTTGATTGGAAGACCAGTGTGGCGGCCAAGGGAATGAACGCTGTGTTGGAAATTTGCTCGGCTTTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

145

Amino Acids

16.0

Weight (kDa)

5.61

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	24 - 130	3.7e-19	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AciI	CCGC	2 cut(s)	281, 377
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	405
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	8
AhlI	ACTAGT	1 cut(s)	19
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
AluBI	AGCT	4 cut(s)	82, 199, 222, 250
AluI	AGCT	4 cut(s)	82, 199, 222, 250
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	288
AoxI	GGCC	4 cut(s)	123, 172, 288, 378
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	193, 223
BaeGI	GKGCMC	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	120, 371
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	3 cut(s)	27, 30, 378
BlsI	GCNGC	3 cut(s)	28, 31, 379
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	318
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	120, 371
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	321
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	4 cut(s)	125, 174, 290, 380
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	2 cut(s)	245, 291
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	125, 174, 290, 380
Bsp1286I	GDGCHC	2 cut(s)	84, 321
Bsp143I	GATC	2 cut(s)	36, 322
BspACI	CCGC	2 cut(s)	281, 377
BspANI	GGCC	4 cut(s)	125, 174, 290, 380
BspLI	GGNNCC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	2 cut(s)	36, 322
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	139, 205
Bst6I	CTCTTC	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	39, 325
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	36, 322
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 287
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	321
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	2 cut(s)	120, 371
BsuRI	GGCC	4 cut(s)	125, 174, 290, 380
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	118, 133, 301
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	38, 324
DpnII	GATC	2 cut(s)	36, 322
EaeI	YGGCCR	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	121, 136, 304
FaiI	YATR	7 cut(s)	35, 110, 119, 134, 225, 302, 429
FatI	CATG	3 cut(s)	117, 132, 300
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	27, 30, 378
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	27, 30, 378
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	3 cut(s)	27, 30, 378
HaeIII	GGCC	4 cut(s)	125, 174, 290, 380
HapII	CCGG	2 cut(s)	245, 291
Hin1II	CATG	3 cut(s)	121, 136, 304
HincII	GTYRAC	2 cut(s)	160, 345
HindII	GTYRAC	2 cut(s)	160, 345
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	245, 291
HphI	GGTGA	2 cut(s)	193, 223
Hpy166II	GTNNAC	3 cut(s)	17, 160, 345
Hpy188I	TCNGA	2 cut(s)	41, 143
Hpy8I	GTNNAC	3 cut(s)	17, 160, 345
Hpy99I	CGWCG	4 cut(s)	143, 158, 170, 343
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	2 cut(s)	139, 205
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 287
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	121, 136, 304
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 322
LmnI	GCTCC	2 cut(s)	87, 247
LpnPI	CCDG	6 cut(s)	188, 258, 263, 298, 304, 382
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	92, 211
MalI	GATC	2 cut(s)	38, 324
MboI	GATC	2 cut(s)	36, 322
MboII	GAAGA	3 cut(s)	125, 376, 434
MhlI	GDGCHC	2 cut(s)	84, 321
MluCI	AATT	2 cut(s)	8, 405
MmeI	TCCRAC	2 cut(s)	121, 381
MnlI	CCTC	3 cut(s)	35, 199, 280
Mph1103I	ATGCAT	1 cut(s)	107
MspI	CCGG	2 cut(s)	245, 291
MspR9I	CCNGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	278, 287
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	36, 322
NlaIII	CATG	3 cut(s)	121, 136, 304
NlaIV	GGNNCC	1 cut(s)	318
NmeAIII	GCCGAG	1 cut(s)	392
NmuCI	GTSAC	2 cut(s)	92, 211
NsiI	ATGCAT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	28, 31, 379
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	318
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	3 cut(s)	27, 30, 378
Sau3AI	GATC	2 cut(s)	36, 322
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	2 cut(s)	84, 321
SetI	ASST	6 cut(s)	84, 201, 224, 252, 344, 434
SfaNI	GCATC	1 cut(s)	114
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	8, 405
SsiI	CCGC	2 cut(s)	281, 377
SspMI	CTAG	1 cut(s)	20
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	139, 205
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	8, 405
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	2 cut(s)	92, 211
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	92, 211
TspDTI	ATGAA	2 cut(s)	134, 404
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	376
XapI	RAATTY	1 cut(s)	405
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.