Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

30240286 .. 30242690

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g30790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGTTGAATCGCGTTTACTAGCTGCTCTGATCCTCCTAGGGTTTCTCATCTCCGCATCCGAATCTCTCCGCTTCGAGCTCCAATCCGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAACGCCATGACCGTCGGAAAGTACTCCGTCGTCAACCCCGACGAGGGCCAGCCCATGCCGCCGTCGCACAAGCTCACCGTTCGGGTGACGTCGAGCCACGGGAATAGCCATCACTACTCGGAGCTGGTGGAATCGGGTCAATTTGCGTTTGCGGCGGTGGAGGCCGGCGATTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCGCAGATCACGTTGACTATTGAGTTTGATTGGAAGACCGGTGTGGCCGCCAAGGACTGGTCCAATGTGGCCAAGAAAGGCTCTGTTGATTTAATGGAATTAGAGCTTAAAAAGTTGTTTGACACTGTCACTTCCATTCATGAGGAGATGACCTATCTCCGTGAACGGGAAGCAGAAATGCAGGATCTGAACACAGCAACCAACTCCAAGATGGCCTACTTGAGCTTGCTTTCACTATTTTTATGCTTATCGGTGGCAGGTTTGCAATGGTGGCACTTGAAGACCTTTTTCGAGAAAAAGAAGCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

213

Amino Acids

23.86

Weight (kDa)

5.9

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	23 - 207	2.3e-48	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	575
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	1 cut(s)	13
AciI	CCGC	7 cut(s)	54, 70, 182, 275, 278, 329, 375
AclWI	GGATC	2 cut(s)	25, 519
AcoI	YGGCCR	2 cut(s)	372, 396
AcyI	GRCGYC	2 cut(s)	212, 314
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	4 cut(s)	166, 167, 384, 493
AgeI	ACCGGT	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	8, 607
AluBI	AGCT	7 cut(s)	23, 79, 196, 247, 433, 552, 631
AluI	AGCT	7 cut(s)	23, 79, 196, 247, 433, 552, 631
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	2 cut(s)	25, 519
AlwNI	CAGNNNCTG	1 cut(s)	514
AoxI	GGCC	6 cut(s)	120, 169, 285, 372, 396, 540
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsiGI	ACCGGT	1 cut(s)	365
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	169, 387
AsuHPI	GGTGA	2 cut(s)	190, 220
AvaII	GGWCC	1 cut(s)	387
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	3 cut(s)	117, 368, 614
Bbv12I	GWGCWC	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	2 cut(s)	240, 532
BceAI	ACGGC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	20, 38
BfoI	RGCGCY	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	575
BisI	GCNGC	5 cut(s)	24, 182, 276, 329, 375
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	5 cut(s)	25, 183, 277, 330, 376
BmcAI	AGTACT	1 cut(s)	146
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	169, 387
BmiI	GGNNCC	1 cut(s)	315
BmsI	GCATC	2 cut(s)	65, 111
BpiI	GAAGAC	3 cut(s)	117, 368, 614
BpuEI	CTTGAG	1 cut(s)	568
BsaHI	GRCGYC	2 cut(s)	212, 314
BsaJI	CCNNGG	3 cut(s)	37, 220, 378
BsaWI	WCCGGW	2 cut(s)	86, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 167, 384, 493
Bse118I	RCCGGY	2 cut(s)	287, 365
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	599
BseDI	CCNNGG	3 cut(s)	37, 220, 378
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	4 cut(s)	166, 167, 384, 493
BseMI	GCAATG	1 cut(s)	599
BseNI	ACTGG	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	1 cut(s)	10
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	6 cut(s)	122, 171, 287, 374, 398, 542
BshNI	GGYRCC	1 cut(s)	313
BshTI	ACCGGT	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	3 cut(s)	87, 288, 366
BslI	CCNNNNNNNGG	4 cut(s)	166, 167, 384, 493
BsnI	GGCC	6 cut(s)	122, 171, 287, 374, 398, 542
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	4 cut(s)	30, 319, 333, 511
BspACI	CCGC	7 cut(s)	54, 70, 182, 275, 278, 329, 375
BspANI	GGCC	6 cut(s)	122, 171, 287, 374, 398, 542
BspFNI	CGCG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	2 cut(s)	25, 519
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	599
BsrFI	RCCGGY	2 cut(s)	287, 365
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	2 cut(s)	287, 365
BssECI	CCNNGG	3 cut(s)	37, 220, 378
BssMI	GATC	4 cut(s)	30, 319, 333, 511
BssNI	GRCGYC	2 cut(s)	212, 314
BssT1I	CCWWGG	2 cut(s)	37, 378
Bst4CI	ACNGT	3 cut(s)	136, 202, 454
BstACI	GRCGYC	2 cut(s)	212, 314
BstC8I	GCNNGC	3 cut(s)	173, 289, 554
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	4 cut(s)	33, 322, 336, 514
BstMBI	GATC	4 cut(s)	30, 319, 333, 511
BstMWI	GCNNNNNNNGC	5 cut(s)	181, 187, 275, 284, 598
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	3 cut(s)	117, 368, 614
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	6 cut(s)	122, 171, 287, 374, 398, 542
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	3 cut(s)	173, 289, 554
CaiI	CAGNNNCTG	1 cut(s)	514
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	2 cut(s)	287, 365
Cfr13I	GGNCC	2 cut(s)	169, 387
Csp6I	GTAC	1 cut(s)	145
CspAI	ACCGGT	1 cut(s)	365
CviAII	CATG	5 cut(s)	115, 130, 178, 298, 467
CviQI	GTAC	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	4 cut(s)	32, 321, 335, 513
DpnII	GATC	4 cut(s)	30, 319, 333, 511
EaeI	YGGCCR	2 cut(s)	372, 396
Ecl136II	GAGCTC	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	37, 378
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	387
Eco53kI	GAGCTC	1 cut(s)	79
EcoICRI	GAGCTC	1 cut(s)	79
EcoT14I	CCWWGG	2 cut(s)	37, 378
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	37, 378
FaeI	CATG	5 cut(s)	118, 133, 181, 301, 470
FaiI	YATR	6 cut(s)	116, 131, 179, 299, 468, 571
FatI	CATG	5 cut(s)	114, 129, 177, 297, 466
Fnu4HI	GCNGC	5 cut(s)	24, 182, 276, 329, 375
FokI	GGATG	1 cut(s)	43
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	5 cut(s)	24, 182, 276, 329, 375
FspBI	CTAG	2 cut(s)	20, 38
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	24, 182, 276, 329, 375
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	6 cut(s)	122, 171, 287, 374, 398, 542
HapII	CCGG	3 cut(s)	87, 288, 366
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	2 cut(s)	212, 314
Hin1II	CATG	5 cut(s)	118, 133, 181, 301, 470
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	2 cut(s)	157, 342
HindII	GTYRAC	2 cut(s)	157, 342
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	3 cut(s)	8, 62, 254
HpaII	CCGG	3 cut(s)	87, 288, 366
HphI	GGTGA	2 cut(s)	190, 220
Hpy166II	GTNNAC	4 cut(s)	17, 157, 342, 491
Hpy188I	TCNGA	6 cut(s)	30, 61, 140, 244, 516, 638
Hpy188III	TCNNGA	2 cut(s)	467, 619
Hpy8I	GTNNAC	4 cut(s)	17, 157, 342, 491
Hpy99I	CGWCG	6 cut(s)	110, 140, 155, 167, 190, 217
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	3 cut(s)	136, 202, 454
HpyCH4IV	ACGT	2 cut(s)	212, 338
HpyCH4V	TGCA	3 cut(s)	102, 508, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	181, 187, 275, 284, 598
HpySE526I	ACGT	2 cut(s)	212, 338
Hsp92I	GRCGYC	2 cut(s)	212, 314
Hsp92II	CATG	5 cut(s)	118, 133, 181, 301, 470
HspAI	GCGC	1 cut(s)	314
KasI	GGCGCC	1 cut(s)	313
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	4 cut(s)	30, 319, 333, 511
LmnI	GCTCC	2 cut(s)	84, 244
LpnPI	CCDG	9 cut(s)	100, 185, 233, 295, 301, 370, 379, 494, 570
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	2 cut(s)	65, 111
MaeI	CTAG	2 cut(s)	20, 38
MaeII	ACGT	2 cut(s)	212, 338
MaeIII	GTNAC	3 cut(s)	89, 208, 454
MalI	GATC	4 cut(s)	32, 321, 335, 513
MboI	GATC	4 cut(s)	30, 319, 333, 511
MboII	GAAGA	3 cut(s)	122, 373, 619
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	263, 425
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	44, 160, 277, 463
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	419, 435
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	3 cut(s)	87, 288, 366
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	5 cut(s)	181, 187, 275, 284, 598
NaeI	GCCGGC	1 cut(s)	289
NarI	GGCGCC	1 cut(s)	314
NdeII	GATC	4 cut(s)	30, 319, 333, 511
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	5 cut(s)	118, 133, 181, 301, 470
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	3 cut(s)	89, 208, 454
NsiI	ATGCAT	1 cut(s)	104
PagI	TCATGA	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 159
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	3 cut(s)	8, 62, 254
PflFI	GACNNNGTC	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	384
PinAI	ACCGGT	1 cut(s)	365
PkrI	GCNGC	5 cut(s)	25, 183, 277, 330, 376
PluTI	GGCGCC	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	169, 387
PstNI	CAGNNNCTG	1 cut(s)	514
PsuI	RGATCY	1 cut(s)	511
PsyI	GACNNNGTC	1 cut(s)	452
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	419, 435
SatI	GCNGC	5 cut(s)	24, 182, 276, 329, 375
Sau3AI	GATC	4 cut(s)	30, 319, 333, 511
Sau96I	GGNCC	2 cut(s)	169, 387
ScaI	AGTACT	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	81
SfaNI	GCATC	2 cut(s)	65, 111
SfoI	GGCGCC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	547
SmoI	CTYRAG	1 cut(s)	547
Sse9I	AATT	2 cut(s)	263, 425
SsiI	CCGC	7 cut(s)	54, 70, 182, 275, 278, 329, 375
SspDI	GGCGCC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	20, 38
SstI	GAGCTC	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	37, 378
TaaI	ACNGT	3 cut(s)	136, 202, 454
TaiI	ACGT	2 cut(s)	215, 341
TaqI	TCGA	4 cut(s)	75, 108, 215, 618
TasI	AATT	2 cut(s)	263, 425
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	4 cut(s)	184, 278, 331, 377
TfiI	GAWTC	3 cut(s)	8, 62, 254
Tru1I	TTAA	2 cut(s)	419, 435
Tru9I	TTAA	2 cut(s)	419, 435
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	3 cut(s)	89, 208, 454
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	3 cut(s)	89, 208, 454
TspDTI	ATGAA	2 cut(s)	131, 455
TspGWI	ACGGA	2 cut(s)	139, 476
TspRI	CASTG	1 cut(s)	457
Tth111I	GACNNNGTC	1 cut(s)	452
Van91I	CCANNNNNTGG	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	387
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmaJI	CCTAGG	1 cut(s)	37
XspI	CTAG	2 cut(s)	20, 38
ZraI	GACGTC	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.