Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

3968055 .. 3968862

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTTGTAGCATTTTCCGAGTCCGACTCACTTCCGAAGAGAACGAAGAAAAAACCCCTTTCCTCTCGATTTCTCTCCGAGTCATCCGAGTCGCAGCGGTTTTTTTCCCACGCGAGTCGTCACTCAGTCACAGCAATGGTCGGATTGCGTCTTCTACTTGCTACCGTGATCGCAGGGTTTTTATTGTCTACATCCGAATGTCTGCGGTTCGAGCTGCAATCGGGTCACACGAAATGCATCGTGGAAGATATAAAATCCAGCGCCATGACCGTCGGAAAATACAGCGTCGTCAACCCCAACGAAGGCCAGCCCATGCCCAATTCTCACAAATTGACCGTCCGGGTGACGTCGCACTACGGAAATAGCTATCACTTTTCGGAGCTGGTGGAATCGGGGCAGTTTGCCCCGAGACGACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

140

Amino Acids

15.49

Weight (kDa)

9.79

Isoelectric Point (pI)

61.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	113
AciI	CCGC	2 cut(s)	97, 205
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	302
AluBI	AGCT	3 cut(s)	214, 366, 382
AluI	AGCT	3 cut(s)	214, 366, 382
Alw26I	GTCTC	1 cut(s)	403
Ama87I	CYCGRG	1 cut(s)	406
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	94, 214
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	106, 201
BcnI	CCSGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	403
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	2 cut(s)	95, 215
BlsI	GCNGC	2 cut(s)	96, 216
Bme1390I	CCNGG	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	406
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	11, 43
BpuMI	CCSGG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	347
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	83, 191
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	138
BseXI	GCAGC	2 cut(s)	106, 201
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	403
BsmBI	CGTCTC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	306
BsoBI	CYCGRG	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	97, 205
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	141
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	347
Bst4CI	ACNGT	3 cut(s)	166, 271, 337
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	83, 191
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	106, 201
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	83, 191
Cac8I	GCNNGC	1 cut(s)	308
CfoI	GCGC	1 cut(s)	263
CseI	GACGC	2 cut(s)	137, 274
CviAII	CATG	2 cut(s)	265, 313
CviJI	RGCY	5 cut(s)	214, 306, 310, 366, 382
CviKI_1	RGCY	5 cut(s)	214, 306, 310, 366, 382
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	2 cut(s)	268, 316
FaiI	YATR	3 cut(s)	251, 266, 314
FatI	CATG	2 cut(s)	264, 312
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	95, 215
FokI	GGATG	2 cut(s)	70, 178
Fsp4HI	GCNGC	2 cut(s)	95, 215
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	2 cut(s)	95, 215
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	1 cut(s)	340
HgaI	GACGC	2 cut(s)	137, 274
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	2 cut(s)	268, 316
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	6 cut(s)	20, 26, 80, 89, 115, 389
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	189, 292
Hpy188I	TCNGA	9 cut(s)	19, 25, 36, 79, 88, 143, 196, 275, 379
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	2 cut(s)	189, 292
Hpy99I	CGWCG	4 cut(s)	275, 290, 352, 417
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	3 cut(s)	166, 271, 337
HpyCH4IV	ACGT	2 cut(s)	347, 415
HpyCH4V	TGCA	2 cut(s)	217, 237
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	124
HpySE526I	ACGT	2 cut(s)	347, 415
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	2 cut(s)	268, 316
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	379
LpnPI	CCDG	5 cut(s)	159, 271, 320, 353, 368
Lsp1109I	GCAGC	2 cut(s)	106, 201
LweI	GCATC	1 cut(s)	246
MaeII	ACGT	2 cut(s)	347, 415
MaeIII	GTNAC	4 cut(s)	119, 127, 224, 343
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	4 cut(s)	49, 58, 143, 257
MluCI	AATT	2 cut(s)	319, 329
MlyI	GAGTC	5 cut(s)	20, 29, 89, 98, 124
MmeI	TCCRAC	3 cut(s)	48, 121, 253
MnlI	CCTC	1 cut(s)	73
Mph1103I	ATGCAT	1 cut(s)	239
MslI	CAYNNNNRTG	2 cut(s)	134, 196
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	1 cut(s)	340
MspR9I	CCNGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	341
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	2 cut(s)	268, 316
NmuCI	GTSAC	4 cut(s)	119, 127, 224, 343
NsiI	ATGCAT	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	96, 216
PleI	GAGTC	5 cut(s)	20, 28, 88, 97, 123
PpsI	GAGTC	5 cut(s)	20, 28, 88, 97, 123
RseI	CAYNNNNRTG	2 cut(s)	134, 196
SatI	GCNGC	2 cut(s)	95, 215
Sau3AI	GATC	1 cut(s)	168
SchI	GAGTC	5 cut(s)	20, 29, 89, 98, 124
ScrFI	CCNGG	1 cut(s)	341
SetI	ASST	5 cut(s)	216, 350, 368, 384, 418
SfaNI	GCATC	1 cut(s)	246
SmiMI	CAYNNNNRTG	2 cut(s)	134, 196
Sse9I	AATT	2 cut(s)	319, 329
SsiI	CCGC	2 cut(s)	97, 205
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	166, 271, 337
TaiI	ACGT	2 cut(s)	350, 418
TaqI	TCGA	2 cut(s)	67, 210
TasI	AATT	2 cut(s)	319, 329
TfiI	GAWTC	1 cut(s)	389
TseFI	GTSAC	4 cut(s)	119, 127, 224, 343
TseI	GCWGC	2 cut(s)	94, 214
Tsp45I	GTSAC	4 cut(s)	119, 127, 224, 343
TspGWI	ACGGA	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	348
Zsp2I	ATGCAT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.