Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

1963358 .. 1963882

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTTGAATTGAGTTTACTAGTTGCTGCTGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTCTCCACATGAAGGCCAATGCCATGACTGTCGGAAAGTACTCCATCGTCAACCCTGATGAAGGCCAGCCCTTGCTGCCCTCACACAAGCTCACCGTGACTTCGAGCTATGGGAATAGCCATCGCTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACAACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTTGCGGCCAAGGGAATGAAAGCCGTGCTGGAAATTTGCTCGGCTCTGGAAAAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

128

Amino Acids

13.99

Weight (kDa)

6.04

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	26 - 116	1.2e-10	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	2 cut(s)	233, 329
AclI	AACGTT	1 cut(s)	293
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	79, 128
AgeI	ACCGGT	1 cut(s)	320
AgsI	TTSAA	1 cut(s)	8
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	3 cut(s)	157, 174, 202
AluI	AGCT	3 cut(s)	157, 174, 202
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	4 cut(s)	81, 130, 240, 330
ApeKI	GCWGC	3 cut(s)	26, 29, 142
ApoI	RAATTY	1 cut(s)	357
AsiGI	ACCGGT	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	323
BbvI	GCAGC	3 cut(s)	13, 16, 129
BccI	CCATC	2 cut(s)	119, 195
BceAI	ACGGC	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	240
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 41
BfoI	RGCGCY	1 cut(s)	272
BisI	GCNGC	4 cut(s)	27, 30, 143, 330
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	28, 31, 144, 331
BmcAI	AGTACT	1 cut(s)	107
BmiI	GGNNCC	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	323
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	40, 333
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 128
Bse118I	RCCGGY	1 cut(s)	320
BseDI	CCNNGG	2 cut(s)	40, 333
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	79, 128
BseXI	GCAGC	3 cut(s)	13, 16, 129
BshFI	GGCC	4 cut(s)	83, 132, 242, 332
BshNI	GGYRCC	1 cut(s)	268
BshTI	ACCGGT	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	243, 321
BslI	CCNNNNNNNGG	2 cut(s)	79, 128
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	4 cut(s)	83, 132, 242, 332
Bsp143I	GATC	2 cut(s)	36, 274
BspACI	CCGC	2 cut(s)	233, 329
BspANI	GGCC	4 cut(s)	83, 132, 242, 332
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	320
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	40, 333
BssMI	GATC	2 cut(s)	36, 274
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	40, 333
Bst4CI	ACNGT	2 cut(s)	97, 163
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	134
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	2 cut(s)	39, 277
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	36, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 230, 239
BstV1I	GCAGC	3 cut(s)	13, 16, 129
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	4 cut(s)	83, 132, 242, 332
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	320
Csp6I	GTAC	1 cut(s)	106
CspAI	ACCGGT	1 cut(s)	320
CviAII	CATG	3 cut(s)	76, 91, 253
CviQI	GTAC	1 cut(s)	106
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	2 cut(s)	38, 276
DpnII	GATC	2 cut(s)	36, 274
EaeI	YGGCCR	1 cut(s)	330
Eco130I	CCWWGG	2 cut(s)	40, 333
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	40, 333
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	40, 333
FaeI	CATG	3 cut(s)	79, 94, 256
FaiI	YATR	5 cut(s)	77, 92, 177, 254, 381
FatI	CATG	3 cut(s)	75, 90, 252
Fnu4HI	GCNGC	4 cut(s)	27, 30, 143, 330
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	27, 30, 143, 330
FspBI	CTAG	2 cut(s)	20, 41
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	4 cut(s)	27, 30, 143, 330
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	4 cut(s)	83, 132, 242, 332
HapII	CCGG	2 cut(s)	243, 321
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	79, 94, 256
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	2 cut(s)	118, 297
HindII	GTYRAC	2 cut(s)	118, 297
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	2 cut(s)	243, 321
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	17, 118, 297
Hpy188I	TCNGA	2 cut(s)	101, 199
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	3 cut(s)	17, 118, 297
HpyAV	CCTTC	2 cut(s)	73, 122
HpyCH4III	ACNGT	2 cut(s)	97, 163
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 230, 239
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	3 cut(s)	79, 94, 256
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	36, 274
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	135, 146, 215, 250, 256, 334, 338, 356
Lsp1109I	GCAGC	3 cut(s)	13, 16, 129
MaeI	CTAG	2 cut(s)	20, 41
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	38, 276
MboI	GATC	2 cut(s)	36, 274
MboII	GAAGA	1 cut(s)	328
MluCI	AATT	2 cut(s)	8, 357
Mly113I	GGCGCC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	2 cut(s)	157, 232
MspI	CCGG	2 cut(s)	243, 321
MwoI	GCNNNNNNNGC	3 cut(s)	142, 230, 239
NarI	GGCGCC	1 cut(s)	269
NdeII	GATC	2 cut(s)	36, 274
NlaIII	CATG	3 cut(s)	79, 94, 256
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	344
NmuCI	GTSAC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	28, 31, 144, 331
PluTI	GGCGCC	1 cut(s)	272
Psp1406I	AACGTT	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	270
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	4 cut(s)	27, 30, 143, 330
Sau3AI	GATC	2 cut(s)	36, 274
ScaI	AGTACT	1 cut(s)	107
SetI	ASST	5 cut(s)	159, 176, 204, 296, 386
SfoI	GGCGCC	1 cut(s)	270
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	2 cut(s)	8, 357
SsiI	CCGC	2 cut(s)	233, 329
SspDI	GGCGCC	1 cut(s)	268
SspMI	CTAG	2 cut(s)	20, 41
StyI	CCWWGG	2 cut(s)	40, 333
TaaI	ACNGT	2 cut(s)	97, 163
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	8, 357
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	332
TfiI	GAWTC	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	3 cut(s)	26, 29, 142
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	92, 141, 356
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	357
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	20, 41
ZrmI	AGTACT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.