Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

53364080 .. 53365785

Gene Structure 1706 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTTGAATTGCGTTTACTGGTTGCTGCTGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTATCCGCTTCGAGCTCCAATCGGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCGTCGGAAAGTACTCCGTCGTCAACCCCGACGAAGGCCAGCCCCTGCCGCCCTCACACAAGCTCACCGTTCGGGTGACTTCGAGCTATGGGAATAGCCATCACTACTCGGAGCTTGTGGAATCGGGTCAGTTTGCTTTTCAGGCGGTGGAGGCCGGAGATTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACCACGTTGACCATTGAGTTTGATTGGAAGACGGGTGTGGCGGCCAAGGACTGGTCCAATGTGGCCAAGAAAGGCTCTGTCGATGTCATGGAATTAGAGCTTAAGAAGTTGTTCGACACTGTTACTTCAATTCACGAGGAGATGACCTACCTCCGTGAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

166

Amino Acids

18.56

Weight (kDa)

5.65

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	24 - 166	3e-32	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	387
AciI	CCGC	4 cut(s)	73, 185, 281, 377
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	2 cut(s)	378, 399
AcyI	GRCGYC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	170, 387
AflII	CTTAAG	1 cut(s)	437
AgsI	TTSAA	2 cut(s)	8, 465
AluBI	AGCT	5 cut(s)	82, 199, 222, 250, 436
AluI	AGCT	5 cut(s)	82, 199, 222, 250, 436
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	31
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	5 cut(s)	123, 172, 288, 378, 399
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
Asp700I	GAANNNNTTC	1 cut(s)	446
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	193, 223
AvaII	GGWCC	1 cut(s)	390
AvrII	CCTAGG	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	120, 371
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	41
BfoI	RGCGCY	1 cut(s)	320
BfrI	CTTAAG	1 cut(s)	437
BisI	GCNGC	4 cut(s)	27, 30, 185, 378
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	28, 31, 186, 379
BmcAI	AGTACT	1 cut(s)	149
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	120, 371
BsaHI	GRCGYC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	40, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 387
Bse1I	ACTGG	2 cut(s)	24, 392
BseDI	CCNNGG	2 cut(s)	40, 381
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	170, 387
BseNI	ACTGG	2 cut(s)	24, 392
BseRI	GAGGAG	1 cut(s)	488
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	5 cut(s)	125, 174, 290, 380, 401
BshNI	GGYRCC	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	170, 387
BsnI	GGCC	5 cut(s)	125, 174, 290, 380, 401
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	36, 322
BspACI	CCGC	4 cut(s)	73, 185, 281, 377
BspANI	GGCC	5 cut(s)	125, 174, 290, 380, 401
BspLI	GGNNCC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	316
BspTI	CTTAAG	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	24, 392
BssECI	CCNNGG	2 cut(s)	40, 381
BssMI	GATC	2 cut(s)	36, 322
BssNI	GRCGYC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	470
BssT1I	CCWWGG	2 cut(s)	40, 381
Bst2BI	CACGAG	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	139, 205, 457, 498
BstACI	GRCGYC	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	437
BstC8I	GCNNGC	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	2 cut(s)	39, 325
BstMBI	GATC	2 cut(s)	36, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 278, 287
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	2 cut(s)	120, 371
BsuRI	GGCC	5 cut(s)	125, 174, 290, 380, 401
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	4 cut(s)	118, 133, 301, 424
CviQI	GTAC	1 cut(s)	148
DinI	GGCGCC	1 cut(s)	318
DpnI	GATC	2 cut(s)	38, 324
DpnII	GATC	2 cut(s)	36, 322
EaeI	YGGCCR	2 cut(s)	378, 399
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	40, 381
Eco24I	GRGCYC	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoT14I	CCWWGG	2 cut(s)	40, 381
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	318
EheI	GGCGCC	1 cut(s)	318
ErhI	CCWWGG	2 cut(s)	40, 381
FaeI	CATG	4 cut(s)	121, 136, 304, 427
FaiI	YATR	5 cut(s)	119, 134, 225, 302, 425
FatI	CATG	4 cut(s)	117, 132, 300, 423
Fnu4HI	GCNGC	4 cut(s)	27, 30, 185, 378
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	4 cut(s)	27, 30, 185, 378
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	4 cut(s)	27, 30, 185, 378
HaeII	RGCGCY	1 cut(s)	320
HaeIII	GGCC	5 cut(s)	125, 174, 290, 380, 401
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	317
Hin1II	CATG	4 cut(s)	121, 136, 304, 427
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	2 cut(s)	160, 345
HindII	GTYRAC	2 cut(s)	160, 345
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	193, 223
Hpy166II	GTNNAC	4 cut(s)	17, 160, 345, 494
Hpy188I	TCNGA	2 cut(s)	143, 247
Hpy188III	TCNNGA	1 cut(s)	470
Hpy8I	GTNNAC	4 cut(s)	17, 160, 345, 494
Hpy99I	CGWCG	4 cut(s)	113, 143, 158, 170
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	4 cut(s)	139, 205, 457, 498
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 278, 287
HpySE526I	ACGT	1 cut(s)	341
Hsp92I	GRCGYC	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	121, 136, 304, 427
HspAI	GCGC	1 cut(s)	317
KasI	GGCGCC	1 cut(s)	316
Kzo9I	GATC	2 cut(s)	36, 322
LmnI	GCTCC	2 cut(s)	87, 247
LpnPI	CCDG	7 cut(s)	5, 188, 194, 263, 298, 304, 373
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	3 cut(s)	92, 211, 457
MalI	GATC	2 cut(s)	38, 324
MboI	GATC	2 cut(s)	36, 322
MboII	GAAGA	2 cut(s)	125, 376
MhlI	GDGCHC	1 cut(s)	84
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	8, 428, 465
MluNI	TGGCCA	1 cut(s)	401
Mly113I	GGCGCC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	4 cut(s)	199, 280, 466, 497
Mox20I	TGGCCA	1 cut(s)	401
Mph1103I	ATGCAT	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	446
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	401
MspCI	CTTAAG	1 cut(s)	437
MspI	CCGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	184, 278, 287
NarI	GGCGCC	1 cut(s)	317
NdeII	GATC	2 cut(s)	36, 322
NlaIII	CATG	4 cut(s)	121, 136, 304, 427
NlaIV	GGNNCC	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	92, 211
NsiI	ATGCAT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	4 cut(s)	28, 31, 186, 379
PluTI	GGCGCC	1 cut(s)	320
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	318
PspPI	GGNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	181
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	4 cut(s)	27, 30, 185, 378
Sau3AI	GATC	2 cut(s)	36, 322
Sau96I	GGNCC	1 cut(s)	390
ScaI	AGTACT	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	8 cut(s)	84, 201, 224, 252, 344, 438, 485, 489
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	3 cut(s)	8, 428, 465
SsiI	CCGC	4 cut(s)	73, 185, 281, 377
SspDI	GGCGCC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	40, 381
TaaI	ACNGT	4 cut(s)	139, 205, 457, 498
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	78, 111, 218, 417, 450
TasI	AATT	3 cut(s)	8, 428, 465
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	2 cut(s)	187, 380
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	92, 211
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	92, 211
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	142, 479
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	387
Vha464I	CTTAAG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	390
XmaJI	CCTAGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.