Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

77417637 .. 77419405

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021710

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCGGTTTCGATGCGGTTCGACCTTCAATCTGGCGCCACTAAATGCATCTCAGACGAAATAAAGAGCAATTCCATGACTGTGGGCAAGTACTCCACCGTCAATCCCAATGAGGGCTTTCCTCTTCCTGATACGCACAAAGTCACTGTCAGGGTGACCTCACCTCATGGCAATAATTATCACCATGGGGATCTTGTGGATACGGGTAATTTTGCCTTCACTGCGGCGGAGACTGGTGATTATTCAGTATGCTTTTGGGTAGCTGATCATAAGCCTCCGACCACGGTGACGATTGATTTTGACTGGAAAACTGGAGTTGAGGCCAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAATGATGGAACTCGAGCTGAAAAAGCTGTTTGATACTGTGACGTCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAATAGAGCAACTAACTCCAAGATGGCGACGTTTAGCTTCCTTTCTCTTGTGGTTTGCTTGTCTGTGGCTGGTTTGCAATTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

195

Amino Acids

22.07

Weight (kDa)

6.16

Isoelectric Point (pI)

27.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	5 - 189	4.6e-52	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	407
AccB1I	GGYRCC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	330
AciI	CCGC	4 cut(s)	5, 16, 224, 227
AclWI	GGATC	1 cut(s)	198
AcyI	GRCGYC	2 cut(s)	36, 404
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
AgsI	TTSAA	2 cut(s)	29, 362
AluBI	AGCT	5 cut(s)	263, 379, 388, 498, 577
AluI	AGCT	5 cut(s)	263, 379, 388, 498, 577
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	198
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	333
AsuHPI	GGTGA	5 cut(s)	153, 166, 173, 248, 298
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	35
BccI	CCATC	2 cut(s)	361, 478
BciVI	GTATCC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	583
BfoI	RGCGCY	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
BmcAI	AGTACT	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	37
BmsI	GCATC	3 cut(s)	3, 57, 556
BpmI	CTGGAG	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	536
BsaHI	GRCGYC	2 cut(s)	36, 404
BsaJI	CCNNGG	4 cut(s)	184, 282, 324, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 330, 351
Bse1I	ACTGG	4 cut(s)	238, 308, 316, 335
BseDI	CCNNGG	4 cut(s)	184, 282, 324, 336
BseLI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	4 cut(s)	238, 308, 316, 335
BseRI	GAGGAG	1 cut(s)	569
BshFI	GGCC	1 cut(s)	323
BshNI	GGYRCC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	113, 330, 351
BsmAI	GTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	190, 265
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	4 cut(s)	5, 16, 224, 227
BspANI	GGCC	1 cut(s)	323
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	198
BspT107I	GGYRCC	1 cut(s)	35
BsrI	ACTGG	4 cut(s)	238, 308, 316, 335
BssECI	CCNNGG	4 cut(s)	184, 282, 324, 336
BssMI	GATC	2 cut(s)	190, 265
BssNI	GRCGYC	2 cut(s)	36, 404
BssT1I	CCWWGG	3 cut(s)	184, 324, 336
Bst4CI	ACNGT	5 cut(s)	82, 100, 148, 286, 400
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	2 cut(s)	36, 404
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	2 cut(s)	184, 282
BstEII	GGTNACC	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	2 cut(s)	193, 268
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	2 cut(s)	190, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
BstPI	GGTNACC	1 cut(s)	154
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	323
BtgI	CCRYGG	2 cut(s)	184, 282
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	2 cut(s)	144, 219
CciI	TCATGA	1 cut(s)	412
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	4 cut(s)	76, 167, 185, 413
CviJI	RGCY	9 cut(s)	117, 263, 274, 323, 379, 388, 498, 530, 577
CviKI_1	RGCY	9 cut(s)	117, 263, 274, 323, 379, 388, 498, 530, 577
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	52
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	2 cut(s)	192, 267
DpnII	GATC	2 cut(s)	190, 265
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	184, 324, 336
Eco47I	GGWCC	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	374
Eco91I	GGTNACC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	154
EcoT14I	CCWWGG	3 cut(s)	184, 324, 336
EcoT22I	ATGCAT	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	3 cut(s)	184, 324, 336
FaeI	CATG	4 cut(s)	79, 170, 188, 416
FaiI	YATR	7 cut(s)	77, 168, 186, 250, 270, 414, 544
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FatI	CATG	4 cut(s)	75, 166, 184, 412
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	583
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	323
HhaI	GCGC	1 cut(s)	38
Hin1I	GRCGYC	2 cut(s)	36, 404
Hin1II	CATG	4 cut(s)	79, 170, 188, 416
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HphI	GGTGA	5 cut(s)	153, 166, 173, 248, 298
Hpy188I	TCNGA	2 cut(s)	55, 279
Hpy188III	TCNNGA	4 cut(s)	128, 413, 434, 553
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	2 cut(s)	35, 226
HpyCH4III	ACNGT	5 cut(s)	82, 100, 148, 286, 400
HpyCH4IV	ACGT	2 cut(s)	404, 491
HpyCH4V	TGCA	3 cut(s)	48, 454, 538
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	2 cut(s)	404, 491
Hsp92I	GRCGYC	2 cut(s)	36, 404
Hsp92II	CATG	4 cut(s)	79, 170, 188, 416
HspAI	GCGC	1 cut(s)	36
KasI	GGCGCC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	190, 265
LmnI	GCTCC	1 cut(s)	582
LpnPI	CCDG	8 cut(s)	18, 136, 141, 219, 289, 297, 316, 516
LweI	GCATC	3 cut(s)	3, 57, 556
MaeI	CTAG	1 cut(s)	583
MaeII	ACGT	2 cut(s)	404, 491
MaeIII	GTNAC	4 cut(s)	142, 154, 286, 400
MalI	GATC	2 cut(s)	192, 267
MboI	GATC	2 cut(s)	190, 265
MboII	GAAGA	4 cut(s)	116, 422, 458, 583
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	4 cut(s)	70, 175, 208, 539
Mly113I	GGCGCC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	8 cut(s)	106, 132, 169, 174, 285, 313, 436, 561
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	221, 385, 544
NarI	GGCGCC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	2 cut(s)	190, 265
NlaIII	CATG	4 cut(s)	79, 170, 188, 416
NlaIV	GGNNCC	1 cut(s)	37
NmuCI	GTSAC	4 cut(s)	142, 154, 286, 400
NsiI	ATGCAT	1 cut(s)	50
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	226
PluTI	GGCGCC	1 cut(s)	39
PspEI	GGTNACC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	333
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	1 cut(s)	190
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	190, 265
Sau96I	GGNCC	1 cut(s)	333
ScaI	AGTACT	1 cut(s)	92
SfaNI	GCATC	3 cut(s)	3, 57, 556
SfoI	GGCGCC	1 cut(s)	37
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	333
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	374, 551
SmoI	CTYRAG	2 cut(s)	374, 551
Sse9I	AATT	4 cut(s)	70, 175, 208, 539
SsiI	CCGC	4 cut(s)	5, 16, 224, 227
SspDI	GGCGCC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	583
StyI	CCWWGG	3 cut(s)	184, 324, 336
TaaI	ACNGT	5 cut(s)	82, 100, 148, 286, 400
TaiI	ACGT	2 cut(s)	407, 494
TaqI	TCGA	3 cut(s)	11, 21, 375
TasI	AATT	4 cut(s)	70, 175, 208, 539
TatI	WGTACW	1 cut(s)	90
TauI	GCSGC	1 cut(s)	227
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	2 cut(s)	151, 226
TseFI	GTSAC	4 cut(s)	142, 154, 286, 400
Tsp45I	GTSAC	4 cut(s)	142, 154, 286, 400
TspDTI	ATGAA	1 cut(s)	401
TspRI	CASTG	2 cut(s)	151, 226
Van91I	CCANNNNNTGG	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	583
ZraI	GACGTC	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	92
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.