Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

892666 .. 893588

Gene Structure 923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATCTTCGTCGAAGCTCGATTTTGCTTTTGATCATTGCGTTGTTATCTCCCAGGACACTATCAATGCGTTACGAGTTAAAGTCTTCGAAAACGAAATGCATCGGTGAGGAGATTCACGAAAACGCCATGTCTATTGGTAAATACTTCATCGTAAACCCTAACGAAGATCATCATCCTCTTCCTGATTCTCACAAGATCATCGTCAAGGTGATGCCACCACAAGGGAAGAATTTGCACGAAGCCGATAATGTAGAGGCTGGTCAGTTCTCGTTTACTGCTTATGAAAATGGGAGTTACGTAGCGTGCATCACTGCCATTGATTATAAGCCGGAGACCACGTTGACTATTGATTTTGATTGGAAGACTGGTGTTCACTCTAAGGAGTGGACCAATGTGGCTAAGAAGAGTCAAGTTGATATGATGGAGTATCAGGTTAAGACCTTGATGGATACTGTTATTTCCATACATGAGGAGATGTATTATCTTCGTGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

166

Amino Acids

19.14

Weight (kDa)

5.96

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	23 - 166	4.5e-29	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	224
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	1 cut(s)	18
AluI	AGCT	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	119, 223
AsuII	TTCGAA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	78, 371
BccI	CCATC	2 cut(s)	418, 442
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	445
BclI	TGATCA	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	329
BfuI	GTATCC	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	390
BmgT120I	GGNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	55
BmsI	GCATC	3 cut(s)	111, 204, 318
BpiI	GAAGAC	2 cut(s)	78, 371
Bpu14I	TTCGAA	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	53
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	53
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseMI	GCAATG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	2 cut(s)	125, 488
BsiSI	CCGG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	89
Bsp143I	GATC	4 cut(s)	4, 33, 169, 198
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	53
BssMI	GATC	4 cut(s)	4, 33, 169, 198
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	1 cut(s)	457
Bst6I	CTCTTC	2 cut(s)	186, 401
BstBAI	YACGTR	1 cut(s)	301
BstBI	TTCGAA	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	381, 402
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	7, 36, 172, 201
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	4 cut(s)	4, 33, 169, 198
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	301
BstV2I	GAAGAC	2 cut(s)	78, 371
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	390
CviAII	CATG	2 cut(s)	130, 470
CviJI	RGCY	5 cut(s)	18, 245, 260, 331, 401
CviKI_1	RGCY	5 cut(s)	18, 245, 260, 331, 401
DdeI	CTNAG	2 cut(s)	381, 402
DpnI	GATC	4 cut(s)	6, 35, 171, 200
DpnII	GATC	4 cut(s)	4, 33, 169, 198
Eam1104I	CTCTTC	2 cut(s)	186, 401
EarI	CTCTTC	2 cut(s)	186, 401
Eco105I	TACGTA	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	104
FaeI	CATG	2 cut(s)	133, 473
FaiI	YATR	6 cut(s)	131, 285, 327, 422, 467, 471
FatI	CATG	2 cut(s)	129, 469
FbaI	TGATCA	1 cut(s)	33
FokI	GGATG	1 cut(s)	162
HapII	CCGG	1 cut(s)	332
Hin1II	CATG	2 cut(s)	133, 473
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HinfI	GANTC	3 cut(s)	115, 188, 409
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	119, 223
Hpy166II	GTNNAC	5 cut(s)	157, 276, 345, 376, 390
Hpy188III	TCNNGA	3 cut(s)	119, 185, 491
Hpy8I	GTNNAC	5 cut(s)	157, 276, 345, 376, 390
Hpy99I	CGWCG	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	457
HpyCH4IV	ACGT	2 cut(s)	300, 341
HpyCH4V	TGCA	3 cut(s)	102, 238, 309
HpyF3I	CTNAG	2 cut(s)	381, 402
HpySE526I	ACGT	2 cut(s)	300, 341
Hsp92II	CATG	2 cut(s)	133, 473
Ksp22I	TGATCA	1 cut(s)	33
Kzo9I	GATC	4 cut(s)	4, 33, 169, 198
LpnPI	CCDG	7 cut(s)	40, 67, 198, 246, 345, 354, 419
LweI	GCATC	3 cut(s)	111, 204, 318
MaeII	ACGT	2 cut(s)	300, 341
MaeIII	GTNAC	2 cut(s)	71, 296
MalI	GATC	4 cut(s)	6, 35, 171, 200
MboI	GATC	4 cut(s)	4, 33, 169, 198
MboII	GAAGA	7 cut(s)	78, 173, 179, 241, 376, 418, 479
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	103, 189, 250, 466
Mph1103I	ATGCAT	1 cut(s)	104
MseI	TTAA	2 cut(s)	80, 438
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	55
NdeII	GATC	4 cut(s)	4, 33, 169, 198
NlaIII	CATG	2 cut(s)	133, 473
NsiI	ATGCAT	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	115, 188
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Ppu21I	YACGTR	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	2 cut(s)	80, 438
Sau3AI	GATC	4 cut(s)	4, 33, 169, 198
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	55
SetI	ASST	7 cut(s)	20, 213, 303, 344, 438, 446, 500
SfaNI	GCATC	3 cut(s)	111, 204, 318
SfuI	TTCGAA	1 cut(s)	89
SinI	GGWCC	1 cut(s)	390
SnaBI	TACGTA	1 cut(s)	301
Sse9I	AATT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	53
TaaI	ACNGT	1 cut(s)	457
TaiI	ACGT	2 cut(s)	303, 344
TaqI	TCGA	3 cut(s)	13, 20, 89
TasI	AATT	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	115, 188
Tru1I	TTAA	2 cut(s)	80, 438
Tru9I	TTAA	2 cut(s)	80, 438
TscAI	CASTG	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	139, 300
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	390
XapI	RAATTY	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.