Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

4123814 .. 4126056

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1052400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCGCGAATCAATTTTAGTATAATTCTGATTCTGGGGTTAATGTCGACGGTGGTGCATTCCATGCGGTTCGACCTCCAATCGGGCGCCACCAAGTGCATCTCCGACGACATAAAGAGCAGCTCCATGACCGTCGGCAAGTACGCCGTCGTCAATCCCAAGGAGGGATTTCCTATACCTGATTCGCATAAGCTCACTATCAGGGTGACCTCACCTTATGGAAGTAACTATCACTATGGGGATCATGTGGAGTCGGGTAATTTTGCGTTTACTGCTGCAGAGACTGGTGATTATTCTGCTTGCTTTTGGGTGTCAGATCATAAGCCCTCGACGACGGTGACGATTGATTTTGACTGGAAAACTGGTGTTGCTGCTAAGGACTGGTCCAAGGTTGCCAAGAAGGGGCAAATTGAAACGATGGAACTTGAGCTGAAAAAATTGTACGATACCGTGTCATCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGGAATGCAACAACTTAATCGATCAACCAACTCCAAGATGGCGGTTTTTAGCGGGCTTTCGCTTTTTGTATGCCTGTCAGTGGCTGGTTTGCAACTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

212

Amino Acids

23.8

Weight (kDa)

7.74

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 206	1.6e-51	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	1 cut(s)	7
AciI	CCGC	3 cut(s)	67, 539, 549
AclWI	GGATC	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	143, 443
AfiI	CCNNNNNNNGG	4 cut(s)	82, 164, 402, 577
AgsI	TTSAA	1 cut(s)	413
AluBI	AGCT	4 cut(s)	123, 193, 430, 628
AluI	AGCT	4 cut(s)	123, 193, 430, 628
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	2 cut(s)	284, 581
ApeKI	GCWGC	3 cut(s)	120, 275, 371
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	204, 217, 299, 349
AvaII	GGWCC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	86
BbvI	GCAGC	3 cut(s)	132, 262, 358
BccI	CCATC	2 cut(s)	412, 529
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	634
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	3 cut(s)	121, 276, 372
BlsI	GCNGC	3 cut(s)	122, 277, 373
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	2 cut(s)	108, 607
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	446, 587
Bsa29I	ATCGAT	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	159, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 164, 402, 577
Bse1I	ACTGG	4 cut(s)	289, 359, 367, 386
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	159, 387
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	4 cut(s)	82, 164, 402, 577
BseNI	ACTGG	4 cut(s)	289, 359, 367, 386
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	132, 262, 358
Bsh1236I	CGCG	1 cut(s)	7
BshNI	GGYRCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	517
BslI	CCNNNNNNNGG	4 cut(s)	82, 164, 402, 577
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	2 cut(s)	58, 507
Bsp143I	GATC	3 cut(s)	241, 316, 518
Bsp68I	TCGCGA	1 cut(s)	7
BspACI	CCGC	3 cut(s)	67, 539, 549
BspDI	ATCGAT	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	4 cut(s)	289, 359, 367, 386
BssECI	CCNNGG	2 cut(s)	159, 387
BssMI	GATC	3 cut(s)	241, 316, 518
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	159, 387
Bst4CI	ACNGT	4 cut(s)	52, 133, 337, 451
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstC8I	GCNNGC	2 cut(s)	301, 551
BstDEI	CTNAG	1 cut(s)	375
BstEII	GGTNACC	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	244, 319, 521
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	241, 316, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
BstPI	GGTNACC	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	276
BstUI	CGCG	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	132, 262, 358
Bsu15I	ATCGAT	1 cut(s)	517
BsuTUI	ATCGAT	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	582
BtuMI	TCGCGA	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	301, 551
CaiI	CAGNNNCTG	2 cut(s)	284, 581
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	384
ClaI	ATCGAT	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	142, 442
CviAII	CATG	4 cut(s)	64, 127, 245, 464
CviJI	RGCY	7 cut(s)	123, 193, 325, 430, 553, 581, 628
CviKI_1	RGCY	7 cut(s)	123, 193, 325, 430, 553, 581, 628
CviQI	GTAC	2 cut(s)	142, 442
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	243, 318, 520
DpnII	GATC	3 cut(s)	241, 316, 518
DraIII	CACNNNGTG	1 cut(s)	96
Eco130I	CCWWGG	2 cut(s)	159, 387
Eco47I	GGWCC	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoT14I	CCWWGG	2 cut(s)	159, 387
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	159, 387
FaeI	CATG	4 cut(s)	67, 130, 248, 467
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	4 cut(s)	63, 126, 244, 463
FauI	CCCGC	1 cut(s)	542
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	3 cut(s)	121, 276, 372
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	3 cut(s)	121, 276, 372
FspBI	CTAG	1 cut(s)	634
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	121, 276, 372
HaeII	RGCGCY	1 cut(s)	90
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	67, 130, 248, 467
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	4 cut(s)	9, 31, 182, 251
HphI	GGTGA	4 cut(s)	204, 217, 299, 349
Hpy166II	GTNNAC	2 cut(s)	48, 270
Hpy188I	TCNGA	3 cut(s)	30, 106, 316
Hpy188III	TCNNGA	4 cut(s)	6, 464, 485, 604
Hpy8I	GTNNAC	2 cut(s)	48, 270
Hpy99I	CGWCG	6 cut(s)	52, 110, 137, 152, 334, 337
HpyAV	CCTTC	2 cut(s)	394, 491
HpyCH4III	ACNGT	4 cut(s)	52, 133, 337, 451
HpyCH4V	TGCA	5 cut(s)	58, 99, 278, 505, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	67, 130, 248, 467
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	3 cut(s)	241, 316, 518
LmnI	GCTCC	2 cut(s)	128, 633
LpnPI	CCDG	9 cut(s)	20, 187, 192, 270, 340, 348, 367, 567, 584
Lsp1109I	GCAGC	3 cut(s)	132, 262, 358
LweI	GCATC	2 cut(s)	108, 607
MaeI	CTAG	1 cut(s)	634
MaeIII	GTNAC	3 cut(s)	205, 224, 337
MalI	GATC	3 cut(s)	243, 318, 520
MboI	GATC	3 cut(s)	241, 316, 518
MboII	GAAGA	2 cut(s)	473, 634
MluCI	AATT	5 cut(s)	13, 24, 259, 408, 437
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	6 cut(s)	86, 157, 220, 337, 487, 612
MseI	TTAA	2 cut(s)	41, 513
Mva1269I	GAATGC	2 cut(s)	58, 507
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	3 cut(s)	241, 316, 518
NlaIII	CATG	4 cut(s)	67, 130, 248, 467
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	205, 337
NruI	TCGCGA	1 cut(s)	7
PagI	TCATGA	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PctI	GAATGC	2 cut(s)	58, 507
PfeI	GAWTC	3 cut(s)	9, 31, 182
PkrI	GCNGC	3 cut(s)	122, 277, 373
PleI	GAGTC	1 cut(s)	259
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	259
PspEI	GGTNACC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	284, 581
RruI	TCGCGA	1 cut(s)	7
RsaI	GTAC	2 cut(s)	143, 443
RsaNI	GTAC	2 cut(s)	142, 442
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	2 cut(s)	41, 513
SatI	GCNGC	3 cut(s)	121, 276, 372
Sau3AI	GATC	3 cut(s)	241, 316, 518
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	260
SetI	ASST	9 cut(s)	78, 125, 181, 195, 212, 217, 393, 432, 630
SfaNI	GCATC	2 cut(s)	108, 607
SfcI	CTRYAG	1 cut(s)	276
SfoI	GGCGCC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	425, 602
SmoI	CTYRAG	2 cut(s)	425, 602
Sse9I	AATT	5 cut(s)	13, 24, 259, 408, 437
SsiI	CCGC	3 cut(s)	67, 539, 549
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	634
StyI	CCWWGG	2 cut(s)	159, 387
TaaI	ACNGT	4 cut(s)	52, 133, 337, 451
TaqI	TCGA	4 cut(s)	47, 72, 329, 517
TasI	AATT	5 cut(s)	13, 24, 259, 408, 437
TfiI	GAWTC	3 cut(s)	9, 31, 182
Tru1I	TTAA	2 cut(s)	41, 513
Tru9I	TTAA	2 cut(s)	41, 513
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	2 cut(s)	205, 337
TseI	GCWGC	3 cut(s)	120, 275, 371
Tsp45I	GTSAC	2 cut(s)	205, 337
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	47
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.