Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

4800169 .. 4801850

Gene Structure 1682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAATCATCGTCGGAGCTCGATCGTACTATTGATCCTCTCAATTTTATCTCCCGTGACACTCTCTATACGATACGAGCTACTTTCTGGGCACACGAAATGCATCTCAGAGGAGATTCACGCAAACGCAATGACCATCGGAAAATACAGCATTATAAACCCTCACGAGGATCATCCTCTTCCTTCTTCCCATAAAGTCACCGTCAGGGTCACATCGCCACAAGGGACGGCTTATCACGAATCGGACGGAGTAGAATCGGGACAATTCTCGTTTGTAGCTGTGGAAACAGGGGATTACATAAGTTGCTTCTCCGCCGTCGATCACAAACCAGAGACGACGCTGATCATTGACTTTGATTGGAGGACGGGTATTCATACCAAGGATTGGTCGAATGTGGCAAAGAAGAGCCAAGTCGAAACGATGGAGTTTGAGGTTAAGAAGTTATTTGAAACCGTGAATGGAATCCACGATGAGATGTTCTATCTCCGCGACAGGGAAGAAGAAATGCACAATCTGAACATAGCGACAAATTCGAAGATGGCATGGTTGAGTTTCGTGTCGCTTGCAGTTTGTTTATCGGTCGCAGGTCTTCAGTTTTGGCACTTGAAGACTTTCTTCCAGAAAAAGAAGCTTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

212

Amino Acids

24.16

Weight (kDa)

6.3

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	23 - 207	1e-48	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	155
Acc36I	ACCTGC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	384
AccII	CGCG	1 cut(s)	489
AciI	CCGC	2 cut(s)	312, 487
AclWI	GGATC	2 cut(s)	28, 177
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	1 cut(s)	575
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	3 cut(s)	166, 384, 493
AgsI	TTSAA	2 cut(s)	449, 607
AluBI	AGCT	4 cut(s)	18, 79, 278, 631
AluI	AGCT	4 cut(s)	18, 79, 278, 631
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	2 cut(s)	28, 177
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	533
BaeGI	GKGCMC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	20
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	581, 614
Bbv12I	GWGCWC	1 cut(s)	20
BccI	CCATC	3 cut(s)	143, 415, 532
BceAI	ACGGC	2 cut(s)	243, 299
BclI	TGATCA	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	575
BmsI	GCATC	1 cut(s)	111
BpiI	GAAGAC	2 cut(s)	581, 614
Bpu14I	TTCGAA	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	378
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	3 cut(s)	166, 384, 493
Bse3DI	GCAATG	1 cut(s)	135
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	3 cut(s)	166, 384, 493
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	489
Bsh1285I	CGRYCG	2 cut(s)	24, 582
BsiEI	CGRYCG	2 cut(s)	24, 582
BsiHKAI	GWGCWC	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	238, 273
BslI	CCNNNNNNNGG	3 cut(s)	166, 384, 493
BsmAI	GTCTC	1 cut(s)	326
BsmBI	CGTCTC	1 cut(s)	326
BsmFI	GGGAC	2 cut(s)	238, 273
Bsp119I	TTCGAA	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	20, 93
Bsp143I	GATC	5 cut(s)	21, 33, 169, 319, 342
BspACI	CCGC	2 cut(s)	312, 487
BspCNI	CTCAG	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	575
BspPI	GGATC	2 cut(s)	28, 177
BspQI	GCTCTTC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	5 cut(s)	21, 33, 169, 319, 342
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	202, 454
Bst6I	CTCTTC	2 cut(s)	183, 398
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	172
BstFNI	CGCG	1 cut(s)	489
BstKTI	GATC	5 cut(s)	24, 36, 172, 322, 345
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	5 cut(s)	21, 33, 169, 319, 342
BstMCI	CGRYCG	2 cut(s)	24, 582
BstSLI	GKGCMC	1 cut(s)	93
BstUI	CGCG	1 cut(s)	489
BstV2I	GAAGAC	2 cut(s)	581, 614
BtgZI	GCGATG	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	172
BveI	ACCTGC	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	564
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	1 cut(s)	543
CviJI	RGCY	6 cut(s)	18, 79, 230, 278, 408, 631
CviKI_1	RGCY	6 cut(s)	18, 79, 230, 278, 408, 631
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	5 cut(s)	23, 35, 171, 321, 344
DpnII	GATC	5 cut(s)	21, 33, 169, 319, 342
Eam1104I	CTCTTC	2 cut(s)	183, 398
EarI	CTCTTC	2 cut(s)	183, 398
EciI	GGCGGA	1 cut(s)	301
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	575
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	378
EcoT22I	ATGCAT	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	546
FaiI	YATR	7 cut(s)	68, 155, 192, 299, 375, 521, 544
FalI	AAGNNNNNCTT	2 cut(s)	599, 631
FaqI	GGGAC	2 cut(s)	238, 273
FatI	CATG	1 cut(s)	542
FbaI	TGATCA	1 cut(s)	342
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	20
HgaI	GACGC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	546
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	4, 115, 239, 254, 462
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	6 cut(s)	15, 109, 140, 244, 516, 638
Hpy188III	TCNNGA	4 cut(s)	164, 236, 258, 619
Hpy99I	CGWCG	3 cut(s)	15, 320, 340
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	202, 454
HpyCH4V	TGCA	3 cut(s)	102, 508, 566
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	546
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	5 cut(s)	21, 33, 169, 319, 342
LguI	GCTCTTC	1 cut(s)	398
LmnI	GCTCC	1 cut(s)	15
LpnPI	CCDG	7 cut(s)	72, 190, 273, 342, 478, 570, 632
LweI	GCATC	1 cut(s)	111
MaeIII	GTNAC	3 cut(s)	55, 196, 208
MalI	GATC	5 cut(s)	23, 35, 171, 321, 344
MboI	GATC	5 cut(s)	21, 33, 169, 319, 342
MboII	GAAGA	9 cut(s)	170, 177, 415, 509, 512, 547, 581, 607, 619
MhlI	GDGCHC	2 cut(s)	20, 93
MluCI	AATT	3 cut(s)	42, 263, 529
MnlI	CCTC	7 cut(s)	47, 103, 160, 171, 186, 354, 424
Mph1103I	ATGCAT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	1 cut(s)	435
MvnI	CGCG	1 cut(s)	489
NdeII	GATC	5 cut(s)	21, 33, 169, 319, 342
NlaIII	CATG	1 cut(s)	546
NmuCI	GTSAC	3 cut(s)	55, 196, 208
NsiI	ATGCAT	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	533
PciSI	GCTCTTC	1 cut(s)	398
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	5 cut(s)	4, 115, 239, 254, 462
PflMI	CCANNNNNTGG	1 cut(s)	384
Ple19I	CGATCG	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	435
Sau3AI	GATC	5 cut(s)	21, 33, 169, 319, 342
SduI	GDGCHC	2 cut(s)	20, 93
SetI	ASST	6 cut(s)	20, 81, 280, 435, 589, 633
SfaNI	GCATC	1 cut(s)	111
SfuI	TTCGAA	1 cut(s)	533
Sse9I	AATT	3 cut(s)	42, 263, 529
SsiI	CCGC	2 cut(s)	312, 487
SstI	GAGCTC	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	202, 454
TaqI	TCGA	5 cut(s)	20, 318, 389, 414, 533
TaqII	GACCGA	1 cut(s)	568
TasI	AATT	3 cut(s)	42, 263, 529
TfiI	GAWTC	5 cut(s)	4, 115, 239, 254, 462
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseFI	GTSAC	3 cut(s)	55, 196, 208
Tsp45I	GTSAC	3 cut(s)	55, 196, 208
TspDTI	ATGAA	2 cut(s)	17, 362
TspGWI	ACGGA	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	384
XapI	RAATTY	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.