Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018330.1

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

859 .. 1311

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018330.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggttgaattgagtttactagttgctgctgctgtgatcctagggtttctattctccacatcccaatctctccgctttgagcttcaatcgggtcacaccaaatgcatcgtcgaagacatgaaggccaatgccatgactgtcggaaagtactccatcgtcaaccctgatgaaggccagcccttgccgccctcacacaagctcaccgttggctatgggaatagccatcgctactcggagcttgtggaatcgggtcagtttgcttttcaggcggtggaggccggagactacatggcgtgtttctgggcgcccgatcacaagcccccgacgacgttgaccattgagtttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

116

Amino Acids

12.73

Weight (kDa)

5.03

Isoelectric Point (pI)

45.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AciI	CCGC	3 cut(s)	73, 185, 269
AclWI	GGATC	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	8, 86
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	3 cut(s)	82, 199, 238
AluI	AGCT	3 cut(s)	82, 199, 238
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	3 cut(s)	123, 172, 276
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	193
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	304
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	2 cut(s)	161, 231
BcoDI	GTCTC	1 cut(s)	276
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 41
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	3 cut(s)	27, 30, 185
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	3 cut(s)	28, 31, 186
BmcAI	AGTACT	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	3 cut(s)	125, 174, 278
BshNI	GGYRCC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	276
BsnI	GGCC	3 cut(s)	125, 174, 278
Bsp143I	GATC	2 cut(s)	36, 310
BspACI	CCGC	3 cut(s)	73, 185, 269
BspANI	GGCC	3 cut(s)	125, 174, 278
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	36, 310
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	40
Bst4CI	ACNGT	2 cut(s)	139, 205
BstACI	GRCGYC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	2 cut(s)	39, 313
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	2 cut(s)	36, 310
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 266, 275
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	125, 174, 278
BtgZI	GCGATG	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	118, 133, 289
CviQI	GTAC	1 cut(s)	148
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	2 cut(s)	38, 312
DpnII	GATC	2 cut(s)	36, 310
Eco130I	CCWWGG	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	121, 136, 292
FaiI	YATR	4 cut(s)	119, 134, 213, 290
FatI	CATG	3 cut(s)	117, 132, 288
Fnu4HI	GCNGC	3 cut(s)	27, 30, 185
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	27, 30, 185
FspBI	CTAG	2 cut(s)	20, 41
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	3 cut(s)	27, 30, 185
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	125, 174, 278
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	121, 136, 292
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HincII	GTYRAC	2 cut(s)	160, 333
HindII	GTYRAC	2 cut(s)	160, 333
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	17, 160, 333
Hpy188I	TCNGA	2 cut(s)	143, 235
Hpy8I	GTNNAC	3 cut(s)	17, 160, 333
Hpy99I	CGWCG	3 cut(s)	113, 328, 331
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	2 cut(s)	139, 205
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 266, 275
HpySE526I	ACGT	1 cut(s)	329
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	121, 136, 292
HspAI	GCGC	1 cut(s)	305
KasI	GGCGCC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	36, 310
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	5 cut(s)	177, 188, 251, 286, 292
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	20, 41
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	38, 312
MboI	GATC	2 cut(s)	36, 310
MboII	GAAGA	1 cut(s)	125
MluCI	AATT	1 cut(s)	8
Mly113I	GGCGCC	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	2 cut(s)	199, 268
Mph1103I	ATGCAT	1 cut(s)	107
MspI	CCGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	184, 266, 275
NarI	GGCGCC	1 cut(s)	305
NdeII	GATC	2 cut(s)	36, 310
NlaIII	CATG	3 cut(s)	121, 136, 292
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	3 cut(s)	28, 31, 186
PluTI	GGCGCC	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SatI	GCNGC	3 cut(s)	27, 30, 185
Sau3AI	GATC	2 cut(s)	36, 310
ScaI	AGTACT	1 cut(s)	149
SetI	ASST	4 cut(s)	84, 201, 240, 332
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	306
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	3 cut(s)	73, 185, 269
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	20, 41
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	2 cut(s)	139, 205
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	1 cut(s)	111
TasI	AATT	1 cut(s)	8
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	187
TfiI	GAWTC	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	2 cut(s)	134, 183
XagI	CCTNNNNNAGG	1 cut(s)	168
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	20, 41
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.