Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

28590954 .. 28593812

Gene Structure 2859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAAGGCCAACGCCATGACCCATCGTCAACCCCGACGAAGGCCAGCCCTTGCGGCCCTCACACAAGAGCTTGTGGAATCGGGTCAATTTGCTTTTCAGGCTGTGGAGGCCGGAGACTATATGGCATGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGATCGATGTGGCAGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAAATTGTCTGGTAATGGAAACTGAGGGAAAAAGAGTGAAAGAAACTAAGAAACCATCCGTGTCGTTTATGATCTTCACTATTATAAATGGAAGCCAAAATTTGGTGTCAAAAGGGTCACTAAATTTTAAAATACTTAAAATACCCTTTAGAAAGAAAAAAATAAAAGTTCATAATTGTTCAAGTAAATCCAGAATCTGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

148

Amino Acids

16.6

Weight (kDa)

9.61

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 71	1.4e-06	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	136
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	225, 340, 364
AcyI	GRCGYC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	39, 343
AgsI	TTSAA	1 cut(s)	423
AhdI	GACNNNNNGTC	1 cut(s)	24
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	108
AlwNI	CAGNNNCTG	1 cut(s)	438
AoxI	GGCC	4 cut(s)	6, 41, 54, 108
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	3 cut(s)	225, 340, 364
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	30, 304
BceAI	ACGGC	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	140
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	54, 198
BlsI	GCNGC	2 cut(s)	55, 199
BmeRI	GACNNNNNGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 343
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	296
BseLI	CCNNNNNNNGG	2 cut(s)	39, 343
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	4 cut(s)	8, 43, 56, 110
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	2 cut(s)	39, 343
BsmAI	GTCTC	1 cut(s)	108
BsnI	GGCC	4 cut(s)	8, 43, 56, 110
Bsp143I	GATC	3 cut(s)	142, 186, 312
BspACI	CCGC	1 cut(s)	53
BspANI	GGCC	4 cut(s)	8, 43, 56, 110
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	142, 186, 312
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	2 cut(s)	264, 288
BstF5I	GGATG	1 cut(s)	296
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	3 cut(s)	145, 189, 315
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	3 cut(s)	142, 186, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 98, 107
BstNSI	RCATGY	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	4 cut(s)	8, 43, 56, 110
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	438
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	189
CviAII	CATG	2 cut(s)	16, 126
DdeI	CTNAG	2 cut(s)	264, 288
DinI	GGCGCC	1 cut(s)	138
DpnI	GATC	3 cut(s)	144, 188, 314
DpnII	GATC	3 cut(s)	142, 186, 312
DraI	TTTAAA	1 cut(s)	370
DriI	GACNNNNNGTC	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	138
EheI	GGCGCC	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	19, 129
FaiI	YATR	7 cut(s)	17, 120, 122, 127, 311, 326, 414
FatI	CATG	2 cut(s)	15, 125
Fnu4HI	GCNGC	2 cut(s)	54, 198
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	54, 198
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	54, 198
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	8, 43, 56, 110
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	19, 129
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	2 cut(s)	29, 165
HindII	GTYRAC	2 cut(s)	29, 165
HinfI	GANTC	2 cut(s)	77, 435
HpaII	CCGG	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	29, 165
Hpy188I	TCNGA	1 cut(s)	446
Hpy188III	TCNNGA	2 cut(s)	239, 432
Hpy8I	GTNNAC	2 cut(s)	29, 165
Hpy99I	CGWCG	3 cut(s)	39, 160, 163
HpyAV	CCTTC	1 cut(s)	33
HpyCH4IV	ACGT	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 98, 107
HpyF3I	CTNAG	2 cut(s)	264, 288
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	19, 129
HspAI	GCGC	1 cut(s)	137
KasI	GGCGCC	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	142, 186, 312
LpnPI	CCDG	7 cut(s)	57, 83, 118, 124, 206, 224, 236
Lsp1109I	GCAGC	1 cut(s)	209
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	3 cut(s)	144, 188, 314
MboI	GATC	3 cut(s)	142, 186, 312
MboII	GAAGA	2 cut(s)	196, 307
MluCI	AATT	6 cut(s)	86, 225, 244, 340, 364, 415
Mly113I	GGCGCC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	68, 100, 259
MseI	TTAA	2 cut(s)	369, 378
MspI	CCGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	53, 98, 107
NarI	GGCGCC	1 cut(s)	137
NdeII	GATC	3 cut(s)	142, 186, 312
NlaIII	CATG	2 cut(s)	19, 129
NlaIV	GGNNCC	1 cut(s)	138
NmeAIII	GCCGAG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	31
PfeI	GAWTC	2 cut(s)	77, 435
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	55, 199
PluTI	GGCGCC	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	438
SaqAI	TTAA	2 cut(s)	369, 378
SatI	GCNGC	2 cut(s)	54, 198
Sau3AI	GATC	3 cut(s)	142, 186, 312
Sau96I	GGNCC	1 cut(s)	55
SetI	ASST	2 cut(s)	72, 164
SfoI	GGCGCC	1 cut(s)	138
Sse9I	AATT	6 cut(s)	86, 225, 244, 340, 364, 415
SsiI	CCGC	1 cut(s)	53
SspDI	GGCGCC	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	201
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	189
TasI	AATT	6 cut(s)	86, 225, 244, 340, 364, 415
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	77, 435
Tru1I	TTAA	2 cut(s)	369, 378
Tru9I	TTAA	2 cut(s)	369, 378
TseFI	GTSAC	1 cut(s)	357
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	17, 224, 401
TspGWI	ACGGA	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	343
XapI	RAATTY	3 cut(s)	225, 340, 364
XceI	RCATGY	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.