Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

21115010 .. 21115521

Gene Structure 512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023281

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTGAATTGCGTTTACTAGTCGCTGCGGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTCTCCGCTTCGAGCTCCAATCGGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCCGTCGTCAACCCCGACGAAGTCCAGCCCTTGCCGCCCTCACACAAGTTCACCGTTCGAGTAGGCTTAGATTCAATTTCAAATTCCGAATTCCGAAATCACGGAATCAGGTGACTTCGGGCTATGGGAATAGCCATCACTACTCGGAGCTTGTGGAATCCGGTCAATTTGCTTTTCAGGCGGTAGAGGCCAGAGACTATATGGCATGTTTCTGGGCGCCCGATCACAAGTCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGATGTGGCAGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

157

Amino Acids

17.73

Weight (kDa)

9.33

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	24 - 142	1.1e-10	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	352
AciI	CCGC	4 cut(s)	29, 73, 171, 317
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	3 cut(s)	218, 225, 441
AcyI	GRCGYC	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	8, 211, 217
AhdI	GACNNNNNGTC	1 cut(s)	141
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	2 cut(s)	82, 286
AluI	AGCT	2 cut(s)	82, 286
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	2 cut(s)	123, 324
ApeKI	GCWGC	2 cut(s)	26, 413
ApoI	RAATTY	3 cut(s)	218, 225, 441
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	179, 259
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	120, 407
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	13, 425
BccI	CCATC	1 cut(s)	279
BceAI	ACGGC	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	324
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 41
BfoI	RGCGCY	1 cut(s)	356
BisI	GCNGC	4 cut(s)	27, 30, 171, 414
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	28, 31, 172, 415
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	120, 407
BsaHI	GRCGYC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	40, 417
BsaWI	WCCGGW	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	40, 417
BseGI	GGATG	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	13, 425
BshFI	GGCC	2 cut(s)	125, 326
BshNI	GGYRCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	2 cut(s)	125, 326
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	36, 358
BspACI	CCGC	4 cut(s)	29, 73, 171, 317
BspANI	GGCC	2 cut(s)	125, 326
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	40, 417
BssMI	GATC	2 cut(s)	36, 358
BssNI	GRCGYC	1 cut(s)	353
BssT1I	CCWWGG	2 cut(s)	40, 417
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	453
BstACI	GRCGYC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	2 cut(s)	39, 361
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	36, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 314, 323
BstNSI	RCATGY	1 cut(s)	345
BstV1I	GCAGC	2 cut(s)	13, 425
BstV2I	GAAGAC	2 cut(s)	120, 407
BsuRI	GGCC	2 cut(s)	125, 326
BtsCI	GGATG	1 cut(s)	59
CfoI	GCGC	1 cut(s)	355
CviAII	CATG	3 cut(s)	118, 133, 342
DdeI	CTNAG	1 cut(s)	203
DinI	GGCGCC	1 cut(s)	354
DpnI	GATC	2 cut(s)	38, 360
DpnII	GATC	2 cut(s)	36, 358
DriI	GACNNNNNGTC	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	453
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	40, 417
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	40, 417
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	354
EheI	GGCGCC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	40, 417
FaeI	CATG	3 cut(s)	121, 136, 345
FaiI	YATR	7 cut(s)	119, 134, 261, 336, 338, 343, 465
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	117, 132, 341
Fnu4HI	GCNGC	4 cut(s)	27, 30, 171, 414
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	4 cut(s)	27, 30, 171, 414
FspBI	CTAG	2 cut(s)	20, 41
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	27, 30, 171, 414
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	125, 326
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	1 cut(s)	355
Hin1I	GRCGYC	1 cut(s)	353
Hin1II	CATG	3 cut(s)	121, 136, 345
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	146, 381
HindII	GTYRAC	2 cut(s)	146, 381
HinfI	GANTC	3 cut(s)	207, 241, 293
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	179, 259
Hpy166II	GTNNAC	4 cut(s)	17, 146, 187, 381
Hpy188I	TCNGA	3 cut(s)	224, 231, 283
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	4 cut(s)	17, 146, 187, 381
Hpy99I	CGWCG	5 cut(s)	113, 144, 156, 376, 379
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 314, 323
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	353
Hsp92II	CATG	3 cut(s)	121, 136, 345
HspAI	GCGC	1 cut(s)	353
KasI	GGCGCC	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	36, 358
LmnI	GCTCC	2 cut(s)	87, 283
LpnPI	CCDG	8 cut(s)	174, 230, 299, 310, 334, 340, 422, 440
Lsp1109I	GCAGC	2 cut(s)	13, 425
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	20, 41
MaeII	ACGT	1 cut(s)	377
MaeIII	GTNAC	2 cut(s)	92, 247
MalI	GATC	2 cut(s)	38, 360
MboI	GATC	2 cut(s)	36, 358
MboII	GAAGA	3 cut(s)	125, 412, 470
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	6 cut(s)	8, 211, 218, 225, 302, 441
Mly113I	GGCGCC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	185, 316
Mph1103I	ATGCAT	1 cut(s)	107
MspI	CCGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	170, 314, 323
NarI	GGCGCC	1 cut(s)	353
NdeII	GATC	2 cut(s)	36, 358
NlaIII	CATG	3 cut(s)	121, 136, 345
NlaIV	GGNNCC	1 cut(s)	354
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	2 cut(s)	92, 247
NsiI	ATGCAT	1 cut(s)	107
NspI	RCATGY	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
PfeI	GAWTC	3 cut(s)	207, 241, 293
PflFI	GACNNNGTC	1 cut(s)	156
PkrI	GCNGC	4 cut(s)	28, 31, 172, 415
PluTI	GGCGCC	1 cut(s)	356
Psp124BI	GAGCTC	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	354
PsyI	GACNNNGTC	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	84
SatI	GCNGC	4 cut(s)	27, 30, 171, 414
Sau3AI	GATC	2 cut(s)	36, 358
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	84, 249, 288, 380, 470
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	6 cut(s)	8, 211, 218, 225, 302, 441
SsiI	CCGC	4 cut(s)	29, 73, 171, 317
SspDI	GGCGCC	1 cut(s)	352
SspMI	CTAG	2 cut(s)	20, 41
SstI	GAGCTC	1 cut(s)	84
StyI	CCWWGG	2 cut(s)	40, 417
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	78, 111, 194
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	6 cut(s)	8, 211, 218, 225, 302, 441
TauI	GCSGC	2 cut(s)	32, 173
TfiI	GAWTC	3 cut(s)	207, 241, 293
TseFI	GTSAC	2 cut(s)	92, 247
TseI	GCWGC	2 cut(s)	26, 413
Tsp45I	GTSAC	2 cut(s)	92, 247
TspDTI	ATGAA	2 cut(s)	134, 440
TspGWI	ACGGA	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	156
XapI	RAATTY	3 cut(s)	218, 225, 441
XceI	RCATGY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	20, 41
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.