Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

3623821 .. 3626365

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1054500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCCCGAGTCAATTTTGGTATAATTCTGATTCTGGGGTTAATGTCGACGGTAGCGCATTCCATGCGGTTCGACCTCCAATCGGGCGCCACCAAGTGCATTTCCGACGACATAAAGAGCAGCGCCATGACCGTCGGCAAGTACGCCGTCGTCAACCCCAATGAGGGATCTCCTGTACCTGATTCCCATAAGCTCACTGTCAGGGTGACCTCACCTCATGGAAGTAACTATCACTATGGGGATCATGTGGAGTCGGGAAATTTTGCGTTCACTGCTGCAGAGACTGGTGATTATTCAGCTTGCTTTTGGGTGTCGGATCATAAGCCCTCGACCACGGTGACGATTGATTTTGACTGGAAAACTGGTGTTGCTGCTAAGGACTGGTCCAATGTTGCCAAGAAAGGGCAGATTGAATCGATGGAACTTGAGCTGAAAAAATTGTATGATACTGTATCATCCATTCATGATGAGATGTTTTATCTACGTGAAAGGGAGGAAGAAATGCAACAACTTAATAGATCAACTAACTCCAAGATGGCGGTTTTTAGCGGCCTTTCTCTTTTTGTATGCCTGTCGGTGGCTGGTTTGCAACTATGGCACCTCAAGATGTTCTTTGCGAGGAAGAAGCTCCTCTACAAGGAAACTGATCGACTTCATCAACATCATTTGCAGTCCCCTTCAATACTTAACGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

232

Amino Acids

25.97

Weight (kDa)

6.83

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 205	4.1e-52	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	86, 597
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	3 cut(s)	67, 539, 549
AclWI	GGATC	3 cut(s)	175, 249, 324
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	96
AfaI	GTAC	2 cut(s)	143, 177
AfiI	CCNNNNNNNGG	6 cut(s)	82, 163, 164, 402, 577, 637
AgsI	TTSAA	2 cut(s)	413, 681
AluBI	AGCT	4 cut(s)	193, 299, 430, 628
AluI	AGCT	4 cut(s)	193, 299, 430, 628
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	3 cut(s)	175, 249, 324
AlwNI	CAGNNNCTG	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	6
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	3 cut(s)	120, 275, 371
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	3 cut(s)	58, 89, 125
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	204, 217, 299, 349
AvaI	CYCGRG	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	384
BanI	GGYRCC	2 cut(s)	86, 597
BarI	GAAGNNNNNNTAC	2 cut(s)	617, 649
BbvI	GCAGC	3 cut(s)	132, 262, 358
BccI	CCATC	2 cut(s)	412, 529
BceAI	ACGGC	1 cut(s)	131
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	276
BfoI	RGCGCY	2 cut(s)	90, 126
BisI	GCNGC	4 cut(s)	121, 276, 372, 550
BlsI	GCNGC	4 cut(s)	122, 277, 373, 551
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	88, 599
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	2 cut(s)	446, 587
Bsa29I	ATCGAT	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	6 cut(s)	82, 163, 164, 402, 577, 637
Bse1I	ACTGG	4 cut(s)	289, 359, 367, 386
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	6 cut(s)	82, 163, 164, 402, 577, 637
BseNI	ACTGG	4 cut(s)	289, 359, 367, 386
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	3 cut(s)	132, 262, 358
BshFI	GGCC	1 cut(s)	552
BshNI	GGYRCC	2 cut(s)	86, 597
BshVI	ATCGAT	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	6 cut(s)	82, 163, 164, 402, 577, 637
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	658
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	552
BsoBI	CYCGRG	1 cut(s)	6
Bsp143I	GATC	5 cut(s)	167, 241, 316, 518, 646
BspACI	CCGC	3 cut(s)	67, 539, 549
BspANI	GGCC	1 cut(s)	552
BspDI	ATCGAT	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	88, 599
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	3 cut(s)	175, 249, 324
BspT107I	GGYRCC	2 cut(s)	86, 597
BsrI	ACTGG	4 cut(s)	289, 359, 367, 386
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	5 cut(s)	167, 241, 316, 518, 646
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	5 cut(s)	52, 133, 199, 337, 451
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	485
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	1 cut(s)	375
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	1 cut(s)	205
BstENI	CCTNNNNNAGG	1 cut(s)	635
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	2 cut(s)	90, 126
BstHHI	GCGC	3 cut(s)	58, 89, 125
BstKTI	GATC	5 cut(s)	170, 244, 319, 521, 649
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	167, 241, 316, 518, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
BstPI	GGTNACC	1 cut(s)	205
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	132, 262, 358
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	195, 270
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	3 cut(s)	58, 89, 125
Cfr13I	GGNCC	1 cut(s)	384
ClaI	ATCGAT	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	142, 176
CviAII	CATG	5 cut(s)	64, 127, 218, 245, 464
CviJI	RGCY	7 cut(s)	193, 299, 325, 430, 552, 581, 628
CviKI_1	RGCY	7 cut(s)	193, 299, 325, 430, 552, 581, 628
CviQI	GTAC	2 cut(s)	142, 176
DdeI	CTNAG	1 cut(s)	375
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	5 cut(s)	169, 243, 318, 520, 648
DpnII	GATC	5 cut(s)	167, 241, 316, 518, 646
DraIII	CACNNNGTG	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	6
Eco91I	GGTNACC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	635
EcoO65I	GGTNACC	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	5 cut(s)	67, 130, 221, 248, 467
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	5 cut(s)	63, 126, 217, 244, 463
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	4 cut(s)	121, 276, 372, 550
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	4 cut(s)	121, 276, 372, 550
GlaI	GCGC	3 cut(s)	57, 88, 124
GluI	GCNGC	4 cut(s)	121, 276, 372, 550
HaeII	RGCGCY	2 cut(s)	90, 126
HaeIII	GGCC	1 cut(s)	552
HhaI	GCGC	3 cut(s)	58, 89, 125
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	5 cut(s)	67, 130, 221, 248, 467
Hin6I	GCGC	3 cut(s)	56, 87, 123
HinP1I	GCGC	3 cut(s)	56, 87, 123
HincII	GTYRAC	2 cut(s)	48, 154
HindII	GTYRAC	2 cut(s)	48, 154
HinfI	GANTC	5 cut(s)	9, 31, 182, 251, 413
HphI	GGTGA	4 cut(s)	204, 217, 299, 349
Hpy166II	GTNNAC	3 cut(s)	48, 154, 270
Hpy188I	TCNGA	3 cut(s)	30, 106, 316
Hpy188III	TCNNGA	4 cut(s)	6, 255, 464, 604
Hpy8I	GTNNAC	3 cut(s)	48, 154, 270
Hpy99I	CGWCG	4 cut(s)	52, 110, 137, 152
HpyAV	CCTTC	1 cut(s)	687
HpyCH4III	ACNGT	5 cut(s)	52, 133, 199, 337, 451
HpyCH4IV	ACGT	2 cut(s)	484, 690
HpyCH4V	TGCA	5 cut(s)	99, 278, 505, 589, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	484, 690
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	5 cut(s)	67, 130, 221, 248, 467
HspAI	GCGC	3 cut(s)	56, 87, 123
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	5 cut(s)	167, 241, 316, 518, 646
LmnI	GCTCC	1 cut(s)	633
Lsp1109I	GCAGC	3 cut(s)	132, 262, 358
MaeII	ACGT	2 cut(s)	484, 690
MaeIII	GTNAC	3 cut(s)	205, 224, 337
MalI	GATC	5 cut(s)	169, 243, 318, 520, 648
MboI	GATC	5 cut(s)	167, 241, 316, 518, 646
MboII	GAAGA	2 cut(s)	509, 634
MflI	RGATCY	1 cut(s)	167
MluCI	AATT	4 cut(s)	13, 24, 259, 437
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	18, 260
MmeI	TCCRAC	2 cut(s)	129, 294
MnlI	CCTC	9 cut(s)	86, 157, 220, 225, 337, 487, 611, 612, 641
MseI	TTAA	3 cut(s)	41, 513, 687
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	5 cut(s)	167, 241, 316, 518, 646
NlaIII	CATG	5 cut(s)	67, 130, 221, 248, 467
NlaIV	GGNNCC	2 cut(s)	88, 599
NmuCI	GTSAC	2 cut(s)	205, 337
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	3 cut(s)	31, 182, 413
PkrI	GCNGC	4 cut(s)	122, 277, 373, 551
PleI	GAGTC	2 cut(s)	17, 259
PluTI	GGCGCC	1 cut(s)	90
PpsI	GAGTC	2 cut(s)	17, 259
Ppu21I	YACGTR	1 cut(s)	485
PspEI	GGTNACC	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	88, 599
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	2 cut(s)	143, 177
RsaNI	GTAC	2 cut(s)	142, 176
SalI	GTCGAC	1 cut(s)	46
SaqAI	TTAA	3 cut(s)	41, 513, 687
SatI	GCNGC	4 cut(s)	121, 276, 372, 550
Sau3AI	GATC	5 cut(s)	167, 241, 316, 518, 646
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	2 cut(s)	18, 260
SfcI	CTRYAG	1 cut(s)	276
SfoI	GGCGCC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	425, 602
SmoI	CTYRAG	2 cut(s)	425, 602
Sse9I	AATT	4 cut(s)	13, 24, 259, 437
SsiI	CCGC	3 cut(s)	67, 539, 549
SspDI	GGCGCC	1 cut(s)	86
TaaI	ACNGT	5 cut(s)	52, 133, 199, 337, 451
TaiI	ACGT	2 cut(s)	487, 693
TaqI	TCGA	5 cut(s)	47, 72, 329, 416, 649
TasI	AATT	4 cut(s)	13, 24, 259, 437
TauI	GCSGC	1 cut(s)	552
TfiI	GAWTC	3 cut(s)	31, 182, 413
Tru1I	TTAA	3 cut(s)	41, 513, 687
Tru9I	TTAA	3 cut(s)	41, 513, 687
TscAI	CASTG	2 cut(s)	202, 277
TseFI	GTSAC	2 cut(s)	205, 337
TseI	GCWGC	3 cut(s)	120, 275, 371
Tsp45I	GTSAC	2 cut(s)	205, 337
TspDTI	ATGAA	2 cut(s)	452, 644
TspRI	CASTG	2 cut(s)	202, 277
VpaK11BI	GGWCC	1 cut(s)	384
XagI	CCTNNNNNAGG	1 cut(s)	635
XapI	RAATTY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.