Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

2325525 .. 2326049

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG014200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGTTGAATTGCGTTTACTAGTCGCTGCTGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTCTCCGCTTTGAGCTTCAATTGGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCATCGGAAAGTCCTCCGTCGTCAACCCTGATGAAGGCCAGCCCTTGCCGCCCTCACACAAGCTCACCGTGACTTCGAGCTATGGGAATAGACATCGCTACTCGGAGCTTGTGGAATCGGGTCAATTTGCTTTTCAGGCGGTGGAGGCCGGAGACTACATGGCGTGTTTCTGGGCGCCCGATCACAAGCCCCCGACGACGTTGACCATTGAGTTTGATTGGAAGACCGGTGTGGCGGCCAAGGGAATGAACGCCGTGCTGGAAATTTGCTCGGCTCTGGAAGAGTATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

142

Amino Acids

15.65

Weight (kDa)

5.51

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	24 - 129	1.4e-15	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AciI	CCGC	4 cut(s)	73, 185, 275, 371
AclWI	GGATC	1 cut(s)	31
AcoI	YGGCCR	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	399
AcyI	GRCGYC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	8, 86
AhlI	ACTAGT	1 cut(s)	19
AluBI	AGCT	4 cut(s)	82, 199, 216, 244
AluI	AGCT	4 cut(s)	82, 199, 216, 244
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	4 cut(s)	123, 172, 282, 372
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	399
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AsiGI	ACCGGT	1 cut(s)	362
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	313
AsuHPI	GGTGA	1 cut(s)	193
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	120, 365
BbvI	GCAGC	2 cut(s)	13, 16
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	282
BcuI	ACTAGT	1 cut(s)	19
BfaI	CTAG	2 cut(s)	20, 41
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	4 cut(s)	27, 30, 185, 372
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	4 cut(s)	28, 31, 186, 373
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	120, 365
BsaHI	GRCGYC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	40, 375
BsaWI	WCCGGW	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	362
BseDI	CCNNGG	2 cut(s)	40, 375
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	4 cut(s)	125, 174, 284, 374
BshNI	GGYRCC	1 cut(s)	310
BshTI	ACCGGT	1 cut(s)	362
BsiSI	CCGG	2 cut(s)	285, 363
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	282
BsnI	GGCC	4 cut(s)	125, 174, 284, 374
Bsp143I	GATC	2 cut(s)	36, 316
BspACI	CCGC	4 cut(s)	73, 185, 275, 371
BspANI	GGCC	4 cut(s)	125, 174, 284, 374
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	31
BspT107I	GGYRCC	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	362
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	2 cut(s)	40, 375
BssMI	GATC	2 cut(s)	36, 316
BssNI	GRCGYC	1 cut(s)	311
BssT1I	CCWWGG	2 cut(s)	40, 375
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	411
BstACI	GRCGYC	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	2 cut(s)	39, 319
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	36, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 272, 281
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	2 cut(s)	120, 365
BsuRI	GGCC	4 cut(s)	125, 174, 284, 374
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	176
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	362
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	3 cut(s)	118, 133, 295
DinI	GGCGCC	1 cut(s)	312
DpnI	GATC	2 cut(s)	38, 318
DpnII	GATC	2 cut(s)	36, 316
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Eco130I	CCWWGG	2 cut(s)	40, 375
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoT14I	CCWWGG	2 cut(s)	40, 375
EcoT22I	ATGCAT	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	40, 375
FaeI	CATG	3 cut(s)	121, 136, 298
FaiI	YATR	5 cut(s)	119, 134, 219, 296, 423
FatI	CATG	3 cut(s)	117, 132, 294
Fnu4HI	GCNGC	4 cut(s)	27, 30, 185, 372
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	27, 30, 185, 372
FspBI	CTAG	2 cut(s)	20, 41
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	4 cut(s)	27, 30, 185, 372
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	125, 174, 284, 374
HapII	CCGG	2 cut(s)	285, 363
HhaI	GCGC	1 cut(s)	313
Hin1I	GRCGYC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	121, 136, 298
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	160, 339
HindII	GTYRAC	2 cut(s)	160, 339
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	285, 363
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	17, 160, 339
Hpy188I	TCNGA	2 cut(s)	143, 241
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	3 cut(s)	17, 160, 339
Hpy99I	CGWCG	4 cut(s)	113, 158, 334, 337
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 272, 281
HpySE526I	ACGT	1 cut(s)	335
Hsp92I	GRCGYC	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	121, 136, 298
HspAI	GCGC	1 cut(s)	311
KasI	GGCGCC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	36, 316
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	177, 188, 257, 292, 298, 376, 380, 398
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	20, 41
MaeII	ACGT	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	92, 205
MalI	GATC	2 cut(s)	38, 318
MboI	GATC	2 cut(s)	36, 316
MboII	GAAGA	3 cut(s)	125, 370, 428
MfeI	CAATTG	1 cut(s)	86
MluCI	AATT	4 cut(s)	8, 86, 260, 399
Mly113I	GGCGCC	1 cut(s)	311
MnlI	CCTC	3 cut(s)	160, 199, 274
Mph1103I	ATGCAT	1 cut(s)	107
MspI	CCGG	2 cut(s)	285, 363
MunI	CAATTG	1 cut(s)	86
MwoI	GCNNNNNNNGC	3 cut(s)	184, 272, 281
NarI	GGCGCC	1 cut(s)	311
NdeII	GATC	2 cut(s)	36, 316
NlaIII	CATG	3 cut(s)	121, 136, 298
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	2 cut(s)	92, 205
NsiI	ATGCAT	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	4 cut(s)	28, 31, 186, 373
PluTI	GGCGCC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	312
SatI	GCNGC	4 cut(s)	27, 30, 185, 372
Sau3AI	GATC	2 cut(s)	36, 316
SetI	ASST	6 cut(s)	84, 201, 218, 246, 338, 428
SfaNI	GCATC	1 cut(s)	114
SfoI	GGCGCC	1 cut(s)	312
SpeI	ACTAGT	1 cut(s)	19
Sse9I	AATT	4 cut(s)	8, 86, 260, 399
SsiI	CCGC	4 cut(s)	73, 185, 275, 371
SspDI	GGCGCC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	20, 41
StyI	CCWWGG	2 cut(s)	40, 375
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	338
TaqI	TCGA	2 cut(s)	111, 212
TasI	AATT	4 cut(s)	8, 86, 260, 399
TauI	GCSGC	2 cut(s)	187, 374
TfiI	GAWTC	1 cut(s)	251
TseFI	GTSAC	2 cut(s)	92, 205
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	2 cut(s)	92, 205
TspDTI	ATGAA	3 cut(s)	134, 183, 398
TspGWI	ACGGA	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	399
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	20, 41
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.