Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

36259508 .. 36261902

Gene Structure 2395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCGCAAATATTGATCTGTACAATCTTGACATTGGGGTTAATGTCAACAATGGCGGTTTCTATGCGGTTCGAGCTTCAATCTGGCCAAACGAAATGCATCTCAGACGAAATAAAAAGCAATTCAATGACTGTGGGCAAGTACTCTATTGTTAATCCCAATGAGGGCTTTCCTCTTCCTGATTCGCACAAGCTTACTGTCAGGGTGACCTCACCTTATGGGAATAATTATCACCATGGGGATCTTGTGGCTTCGGGTAATTTTGCCTTCACTGCGGCGGAGACTGGTGATTATTCGGCTTGCTTTTGGGTAATTGATCACAAGCCAAAGGCCACGGTGATTATTGATTTTGACTGGAAAACTGGTGTTGCTGCCAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAACTGATGGAACTTGAGCTTAAAAAACTGTTTGATACTGTGATGGCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAATCGATCAACTAACTCCAAGATGGCGACGCTTAGCTTCCTTTCCCTTGTAGTTTGCTTGTCTGTTGCTGGTTTGCAATTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

212

Amino Acids

23.89

Weight (kDa)

7.0

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 206	2e-50	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	381
AciI	CCGC	4 cut(s)	56, 67, 275, 278
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	2 cut(s)	85, 456
AfaI	GTAC	2 cut(s)	22, 143
AfiI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
AgsI	TTSAA	3 cut(s)	80, 126, 413
AluBI	AGCT	5 cut(s)	76, 193, 430, 549, 628
AluI	AGCT	5 cut(s)	76, 193, 430, 549, 628
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	249
AoxI	GGCC	3 cut(s)	85, 330, 456
ApeKI	GCWGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	5 cut(s)	204, 217, 224, 299, 349
AvaII	GGWCC	1 cut(s)	384
BalI	TGGCCA	2 cut(s)	87, 458
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	412, 448, 529
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	634
BisI	GCNGC	2 cut(s)	276, 372
BlpI	GCTNAGC	1 cut(s)	545
BlsI	GCNGC	2 cut(s)	277, 373
BmcAI	AGTACT	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmsI	GCATC	2 cut(s)	108, 607
Bpu1102I	GCTNAGC	1 cut(s)	545
BpuEI	CTTGAG	2 cut(s)	446, 587
Bsa29I	ATCGAT	1 cut(s)	517
BsaJI	CCNNGG	4 cut(s)	235, 333, 375, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 381, 402
Bse1I	ACTGG	4 cut(s)	289, 359, 367, 386
BseCI	ATCGAT	1 cut(s)	517
BseDI	CCNNGG	4 cut(s)	235, 333, 375, 387
BseLI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	289, 359, 367, 386
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	3 cut(s)	87, 332, 458
BshVI	ATCGAT	1 cut(s)	517
BslI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	87, 332, 458
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	15, 241, 316, 518
Bsp1720I	GCTNAGC	1 cut(s)	545
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	4 cut(s)	56, 67, 275, 278
BspANI	GGCC	3 cut(s)	87, 332, 458
BspCNI	CTCAG	1 cut(s)	116
BspDI	ATCGAT	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	463
BspPI	GGATC	1 cut(s)	249
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	4 cut(s)	289, 359, 367, 386
BssECI	CCNNGG	4 cut(s)	235, 333, 375, 387
BssMI	GATC	4 cut(s)	15, 241, 316, 518
BssT1I	CCWWGG	3 cut(s)	235, 375, 387
Bst4CI	ACNGT	5 cut(s)	133, 199, 337, 441, 451
Bst6I	CTCTTC	1 cut(s)	180
BstAUI	TGTACA	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	103, 545
BstDSI	CCRYGG	2 cut(s)	235, 333
BstEII	GGTNACC	1 cut(s)	205
BstKTI	GATC	4 cut(s)	18, 244, 319, 521
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	4 cut(s)	15, 241, 316, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 272, 595
BstPI	GGTNACC	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	517
BsuRI	GGCC	3 cut(s)	87, 332, 458
BsuTUI	ATCGAT	1 cut(s)	517
BtgI	CCRYGG	2 cut(s)	235, 333
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	301
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	1 cut(s)	384
ClaI	ATCGAT	1 cut(s)	517
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	21, 142
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	2 cut(s)	236, 464
CviQI	GTAC	2 cut(s)	21, 142
DdeI	CTNAG	2 cut(s)	103, 545
DpnI	GATC	4 cut(s)	17, 243, 318, 520
DpnII	GATC	4 cut(s)	15, 241, 316, 518
EaeI	YGGCCR	2 cut(s)	85, 456
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	3 cut(s)	235, 375, 387
Eco47I	GGWCC	1 cut(s)	384
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoT14I	CCWWGG	3 cut(s)	235, 375, 387
EcoT22I	ATGCAT	1 cut(s)	101
ErhI	CCWWGG	3 cut(s)	235, 375, 387
FaeI	CATG	2 cut(s)	239, 467
FaiI	YATR	5 cut(s)	65, 219, 237, 465, 595
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	2 cut(s)	235, 463
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	276, 372
Fsp4HI	GCNGC	2 cut(s)	276, 372
FspBI	CTAG	1 cut(s)	634
GluI	GCNGC	2 cut(s)	276, 372
HaeIII	GGCC	3 cut(s)	87, 332, 458
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	2 cut(s)	239, 467
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	1 cut(s)	182
HphI	GGTGA	5 cut(s)	204, 217, 224, 299, 349
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	5 cut(s)	28, 179, 464, 485, 604
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	5 cut(s)	133, 199, 337, 441, 451
HpyCH4V	TGCA	3 cut(s)	99, 505, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 272, 595
HpyF3I	CTNAG	2 cut(s)	103, 545
Hsp92II	CATG	2 cut(s)	239, 467
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	15, 241, 316, 518
LmnI	GCTCC	1 cut(s)	633
LpnPI	CCDG	8 cut(s)	69, 187, 192, 270, 340, 348, 367, 567
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	108, 607
MaeI	CTAG	1 cut(s)	634
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	4 cut(s)	17, 243, 318, 520
MboI	GATC	4 cut(s)	15, 241, 316, 518
MboII	GAAGA	4 cut(s)	167, 473, 509, 634
MflI	RGATCY	1 cut(s)	241
MlsI	TGGCCA	2 cut(s)	87, 458
MluCI	AATT	5 cut(s)	121, 226, 259, 312, 590
MluNI	TGGCCA	2 cut(s)	87, 458
MnlI	CCTC	5 cut(s)	157, 183, 220, 487, 612
Mox20I	TGGCCA	2 cut(s)	87, 458
Mph1103I	ATGCAT	1 cut(s)	101
MscI	TGGCCA	2 cut(s)	87, 458
MseI	TTAA	4 cut(s)	41, 153, 432, 513
Msp20I	TGGCCA	2 cut(s)	87, 458
MwoI	GCNNNNNNNGC	3 cut(s)	73, 272, 595
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	4 cut(s)	15, 241, 316, 518
NlaIII	CATG	2 cut(s)	239, 467
NmuCI	GTSAC	1 cut(s)	205
NsiI	ATGCAT	1 cut(s)	101
PagI	TCATGA	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	2 cut(s)	277, 373
PspEI	GGTNACC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	22, 143
RsaNI	GTAC	2 cut(s)	21, 142
SaqAI	TTAA	4 cut(s)	41, 153, 432, 513
SatI	GCNGC	2 cut(s)	276, 372
Sau3AI	GATC	4 cut(s)	15, 241, 316, 518
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	143
SetI	ASST	8 cut(s)	78, 195, 212, 217, 393, 432, 551, 630
SfaNI	GCATC	2 cut(s)	108, 607
SinI	GGWCC	1 cut(s)	384
SmlI	CTYRAG	2 cut(s)	425, 602
SmoI	CTYRAG	2 cut(s)	425, 602
Sse9I	AATT	5 cut(s)	121, 226, 259, 312, 590
SsiI	CCGC	4 cut(s)	56, 67, 275, 278
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	235, 375, 387
TaaI	ACNGT	5 cut(s)	133, 199, 337, 441, 451
TaqI	TCGA	2 cut(s)	72, 517
TasI	AATT	5 cut(s)	121, 226, 259, 312, 590
TatI	WGTACW	2 cut(s)	20, 141
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	4 cut(s)	41, 153, 432, 513
Tru9I	TTAA	4 cut(s)	41, 153, 432, 513
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	384
XspI	CTAG	1 cut(s)	634
ZrmI	AGTACT	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.