Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

24853125 .. 24855079

Gene Structure 1955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCCCATATCAATTTTTCTGTAATTTTGATTTTGGGGTTAATGTCAACAATGGCGCATTCAATGCGTTTCGACCTTCAATCGGGCGCCACCAAGTGCATCTCAGACGACATAAAGAGCAATGCCATGACGGTGGGCAAGTATTCCGTCGTTAACCACAACGAGGGCTTTCCTAAACCTGACTCTCATAAGGTCACAGTCAGGGTGACCTCACCTTATGGAAGTAATTATCACTATGGGGATCACGTGGAATCGGGTAATTTTGCGTTTACTGCGGCAGAGACTGGTGATTATTCAGCTTGCTTTTGGGTGTCTGATCGTAAGCCCTCGACCACGGTGACCATTGATTTTGACTGGAAAACTGGAGTTGCTGCTAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAACGATGGAAGTTGAGCTGACAAAATTATATGATACTGTGTCATCCATTCATGATGAGATGTTTTTTCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAACAGATCAACTAACTCCAAGATGGCGACTTTTAGCTTCCTTTCCCTTCTGGTTTGCCTGTCAGTGGCCGGTTTGCAACTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

212

Amino Acids

23.91

Weight (kDa)

6.7

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	579
AcvI	CACGTG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	96
AfiI	CCNNNNNNNGG	4 cut(s)	82, 163, 402, 577
AgsI	TTSAA	3 cut(s)	63, 80, 413
AluBI	AGCT	4 cut(s)	299, 430, 549, 628
AluI	AGCT	4 cut(s)	299, 430, 549, 628
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	58, 89
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	204, 217, 299, 349
AvaII	GGWCC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	86
BbrPI	CACGTG	1 cut(s)	247
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	2 cut(s)	412, 529
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	634
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	2 cut(s)	276, 372
BlsI	GCNGC	2 cut(s)	277, 373
Bme18I	GGWCC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	2 cut(s)	108, 607
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	333, 387
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 163, 402, 577
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	289, 359, 367, 386
Bse3DI	GCAATG	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	333, 387
BseGI	GGATG	1 cut(s)	455
BseLI	CCNNNNNNNGG	4 cut(s)	82, 163, 402, 577
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	289, 359, 367, 386
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	1 cut(s)	358
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	4 cut(s)	82, 163, 402, 577
BsmAI	GTCTC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	241, 316, 518
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	289, 359, 367, 386
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	2 cut(s)	333, 387
BssMI	GATC	3 cut(s)	241, 316, 518
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	4 cut(s)	133, 199, 337, 451
BstACI	GRCGYC	1 cut(s)	87
BstAPI	GCANNNNNTGC	1 cut(s)	64
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	103, 375
BstDSI	CCRYGG	1 cut(s)	333
BstEII	GGTNACC	2 cut(s)	205, 337
BstF5I	GGATG	1 cut(s)	455
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	2 cut(s)	58, 89
BstKTI	GATC	3 cut(s)	244, 319, 521
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	241, 316, 518
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
BstPI	GGTNACC	2 cut(s)	205, 337
BstV1I	GCAGC	1 cut(s)	358
BstXI	CCANNNNNNTGG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	581
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	582
Cac8I	GCNNGC	1 cut(s)	301
CaiI	CAGNNNCTG	1 cut(s)	284
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	58, 89
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	384
CviAII	CATG	2 cut(s)	127, 464
CviJI	RGCY	7 cut(s)	168, 299, 325, 430, 549, 581, 628
CviKI_1	RGCY	7 cut(s)	168, 299, 325, 430, 549, 581, 628
DdeI	CTNAG	2 cut(s)	103, 375
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	243, 318, 520
DpnII	GATC	3 cut(s)	241, 316, 518
DraIII	CACNNNGTG	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	384
Eco72I	CACGTG	1 cut(s)	247
Eco91I	GGTNACC	2 cut(s)	205, 337
EcoO65I	GGTNACC	2 cut(s)	205, 337
EcoT14I	CCWWGG	1 cut(s)	387
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	2 cut(s)	130, 467
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	2 cut(s)	126, 463
Fnu4HI	GCNGC	2 cut(s)	276, 372
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	276, 372
FspBI	CTAG	1 cut(s)	634
GlaI	GCGC	2 cut(s)	57, 88
GluI	GCNGC	2 cut(s)	276, 372
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	2 cut(s)	58, 89
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	130, 467
Hin6I	GCGC	2 cut(s)	56, 87
HinP1I	GCGC	2 cut(s)	56, 87
HincII	GTYRAC	2 cut(s)	48, 154
HindII	GTYRAC	2 cut(s)	48, 154
HinfI	GANTC	2 cut(s)	182, 251
HpaI	GTTAAC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	4 cut(s)	204, 217, 299, 349
Hpy166II	GTNNAC	3 cut(s)	48, 154, 270
Hpy188I	TCNGA	2 cut(s)	106, 316
Hpy188III	TCNNGA	3 cut(s)	464, 485, 604
Hpy8I	GTNNAC	3 cut(s)	48, 154, 270
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	86, 569
HpyCH4III	ACNGT	4 cut(s)	133, 199, 337, 451
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	99, 505, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
HpyF3I	CTNAG	2 cut(s)	103, 375
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	2 cut(s)	130, 467
HspAI	GCGC	2 cut(s)	56, 87
KasI	GGCGCC	1 cut(s)	86
KspAI	GTTAAC	1 cut(s)	154
Kzo9I	GATC	3 cut(s)	241, 316, 518
LmnI	GCTCC	1 cut(s)	633
LpnPI	CCDG	9 cut(s)	187, 192, 270, 340, 348, 367, 548, 584, 595
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	108, 607
MaeI	CTAG	1 cut(s)	634
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	3 cut(s)	193, 205, 337
MalI	GATC	3 cut(s)	243, 318, 520
MboI	GATC	3 cut(s)	241, 316, 518
MboII	GAAGA	3 cut(s)	473, 509, 634
MluCI	AATT	5 cut(s)	13, 24, 226, 259, 437
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	157, 220, 337, 487, 612
MseI	TTAA	3 cut(s)	41, 153, 513
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	58
MwoI	GCNNNNNNNGC	3 cut(s)	64, 272, 595
NarI	GGCGCC	1 cut(s)	87
NdeII	GATC	3 cut(s)	241, 316, 518
NlaIII	CATG	2 cut(s)	130, 467
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	193, 205, 337
PagI	TCATGA	1 cut(s)	463
PctI	GAATGC	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	277, 373
PleI	GAGTC	1 cut(s)	176
PluTI	GGCGCC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	247
PspCI	CACGTG	1 cut(s)	247
PspEI	GGTNACC	2 cut(s)	205, 337
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	41, 153, 513
SatI	GCNGC	2 cut(s)	276, 372
Sau3AI	GATC	3 cut(s)	241, 316, 518
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	1 cut(s)	176
SfaNI	GCATC	2 cut(s)	108, 607
SfoI	GGCGCC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	5 cut(s)	13, 24, 226, 259, 437
SsiI	CCGC	1 cut(s)	275
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	133, 199, 337, 451
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	72, 329
TasI	AATT	5 cut(s)	13, 24, 226, 259, 437
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	3 cut(s)	41, 153, 513
Tru9I	TTAA	3 cut(s)	41, 153, 513
TscAI	CASTG	1 cut(s)	582
TseFI	GTSAC	3 cut(s)	193, 205, 337
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	3 cut(s)	193, 205, 337
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	384
XspI	CTAG	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.