Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

52448378 .. 52450379

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1422900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGTTTAAAGGTTGGTCCCTTGGGTGCAAGGTATACTACCTAGAGACCATTAGCTGGGCTTGTCGATGCAGTCATATGGGTCTTGAGCTTGAGCTGCGGAAACTCGAAGGAGCAGTTGAGGCCATCCACGAGAATCTACTTTATCTCAAGGGCAGAGAATCAGAGATGAGGGACGTGAGCGAAAGAACAAATGCCCGGGTGGCGTGGTTTAGCATGATGTCGTTGGCCGTCTGCATTATTGTTTCGACCCTTCAGTTATGGCACCTGAAGAATTTTTTCCAAAAGAAGAAGCTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0098588 GO:0098791 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

100

Amino Acids

11.62

Weight (kDa)

9.0

Isoelectric Point (pI)

22.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	28 - 94	4.7e-21	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	97
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	236, 287
AfiI	CCNNNNNNNGG	1 cut(s)	54
AjiI	CACGTC	1 cut(s)	175
AluBI	AGCT	4 cut(s)	54, 88, 94, 292
AluI	AGCT	4 cut(s)	54, 88, 94, 292
Alw26I	GTCTC	1 cut(s)	38
Ama87I	CYCGRG	1 cut(s)	195
AoxI	GGCC	2 cut(s)	120, 225
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	15
AsuC2I	CCSGG	2 cut(s)	196, 197
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	261
BauI	CACGAG	1 cut(s)	128
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	212
BcnI	CCSGG	2 cut(s)	196, 197
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	95
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	2 cut(s)	196, 197
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	195
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	17, 263
BmrFI	CCNGG	2 cut(s)	196, 197
BmsI	GCATC	1 cut(s)	56
BpuEI	CTTGAG	3 cut(s)	104, 110, 131
BpuMI	CCSGG	2 cut(s)	196, 197
BsaI	GGTCTC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	19, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	19, 195
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	81
BseYI	CCCAGC	1 cut(s)	54
BshFI	GGCC	2 cut(s)	122, 227
BshNI	GGYRCC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	2 cut(s)	122, 227
Bso31I	GGTCTC	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	2 cut(s)	122, 227
BspLI	GGNNCC	2 cut(s)	17, 263
BspT107I	GGYRCC	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	19, 195
BssNAI	GTATAC	1 cut(s)	34
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	34
Bst2BI	CACGAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	38
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 119, 200
BstSCI	CCNGG	2 cut(s)	194, 195
BstV1I	GCAGC	1 cut(s)	81
BstZ17I	GTATAC	1 cut(s)	34
BsuRI	GGCC	2 cut(s)	122, 227
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	15
Cfr9I	CCCGGG	1 cut(s)	195
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	7 cut(s)	54, 59, 88, 94, 122, 227, 292
CviKI_1	RGCY	7 cut(s)	54, 59, 88, 94, 122, 227, 292
DraI	TTTAAA	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	15
Eco57I	CTGAAG	2 cut(s)	236, 287
Eco88I	CYCGRG	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	1 cut(s)	217
FaiI	YATR	5 cut(s)	34, 75, 77, 215, 259
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	213
FauNDI	CATATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	95
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	1 cut(s)	95
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	122, 227
HapII	CCGG	1 cut(s)	196
Hin1II	CATG	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	2 cut(s)	133, 158
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	101, 260
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	27, 69, 234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 119, 200
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	110
LpnPI	CCDG	3 cut(s)	40, 209, 278
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	56
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	174
MboII	GAAGA	2 cut(s)	280, 298
MluCI	AATT	1 cut(s)	271
MnlI	CCTC	2 cut(s)	112, 162
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	2 cut(s)	6, 298
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	196, 197
MwoI	GCNNNNNNNGC	3 cut(s)	94, 119, 200
NciI	CCSGG	2 cut(s)	196, 197
NdeI	CATATG	1 cut(s)	75
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	17, 263
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	133, 158
PflMI	CCANNNNNTGG	1 cut(s)	54
PkrI	GCNGC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	17, 263
PspPI	GGNCC	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	6, 298
SatI	GCNGC	1 cut(s)	95
Sau96I	GGNCC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	196, 197
SetI	ASST	9 cut(s)	13, 33, 42, 56, 90, 96, 177, 267, 294
SfaNI	GCATC	1 cut(s)	56
SinI	GGWCC	1 cut(s)	15
SmaI	CCCGGG	1 cut(s)	197
SmlI	CTYRAG	3 cut(s)	83, 89, 146
SmoI	CTYRAG	3 cut(s)	83, 89, 146
Sse9I	AATT	1 cut(s)	271
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	194, 195
StyI	CCWWGG	1 cut(s)	19
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	64, 105, 245
TasI	AATT	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	133, 158
Tru1I	TTAA	2 cut(s)	6, 298
Tru9I	TTAA	2 cut(s)	6, 298
TseI	GCWGC	1 cut(s)	94
TspMI	CCCGGG	1 cut(s)	195
Van91I	CCANNNNNTGG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	271
XmaI	CCCGGG	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.