Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

67484702 .. 67486071

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG367300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTGAATTGCGTTTACTGGTTGCTGCTGCTGTGATCCTAGGGTTTCTATTCTCCACATCCCAATCTCTCCGCTTCGAGCTCCAATCGGGTCACACCAAATGCATCGTCGAAGACATGAAGGCCAATGCCATGACCGTCGGAAAGTACTCCGTCGTCAACCCCGACGAAGGCCAACCCTTGCCGCCCTCACACAAGCTCACCGTTCGGGTCATGGAATTAGAGCTTAAGAAGTTGTTCGACACTGTTACTTCAATTCACGAGGAGATGACCTACCTCCGTGAACGGGAAGAAGAAATGCAGGATCTTAATAGAGCAACCAACGCCAAAATGGCCTGGTTGAGTTTTCTTTCGCTTTTTATTTGCTTATCGGTGGCAGGTTTGCAATGGTGGCACTTGAAGACCTTTTTCCAGAAAAAGAAGCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

143

Amino Acids

16.46

Weight (kDa)

7.8

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	68 - 138	1.1e-19	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AciI	CCGC	2 cut(s)	73, 185
AclWI	GGATC	2 cut(s)	31, 312
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	2 cut(s)	170, 286
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	8, 255, 400
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	4 cut(s)	82, 199, 226, 424
AluI	AGCT	4 cut(s)	82, 199, 226, 424
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	2 cut(s)	31, 312
AoxI	GGCC	3 cut(s)	123, 172, 333
ApeKI	GCWGC	2 cut(s)	26, 29
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
Asp700I	GAANNNNTTC	1 cut(s)	236
AspA2I	CCTAGG	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	193
AvrII	CCTAGG	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	84
BauI	CACGAG	1 cut(s)	260
BbsI	GAAGAC	2 cut(s)	120, 407
Bbv12I	GWGCWC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	13, 16
BciT130I	CCWGG	1 cut(s)	337
BfaI	CTAG	1 cut(s)	41
BfrI	CTTAAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	368
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	3 cut(s)	27, 30, 185
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	3 cut(s)	28, 31, 186
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	120, 407
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 286
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	170, 286
BseMI	GCAATG	1 cut(s)	392
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	13, 16
BshFI	GGCC	3 cut(s)	125, 174, 335
BsiHKAI	GWGCWC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	170, 286
BsnI	GGCC	3 cut(s)	125, 174, 335
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	36, 304
BspACI	CCGC	2 cut(s)	73, 185
BspANI	GGCC	3 cut(s)	125, 174, 335
BspMI	ACCTGC	1 cut(s)	368
BspPI	GGATC	2 cut(s)	31, 312
BspTI	CTTAAG	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	2 cut(s)	36, 304
BssSI	CACGAG	1 cut(s)	260
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	3 cut(s)	139, 205, 247
BstAFI	CTTAAG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	2 cut(s)	39, 307
BstMBI	GATC	2 cut(s)	36, 304
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 332, 391
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstV1I	GCAGC	2 cut(s)	13, 16
BstV2I	GAAGAC	2 cut(s)	120, 407
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	125, 174, 335
BtsCI	GGATG	1 cut(s)	59
BtsIMutI	CAGTG	1 cut(s)	243
BveI	ACCTGC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	3 cut(s)	118, 133, 214
CviJI	RGCY	7 cut(s)	82, 125, 174, 199, 226, 335, 424
CviKI_1	RGCY	7 cut(s)	82, 125, 174, 199, 226, 335, 424
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	2 cut(s)	38, 306
DpnII	GATC	2 cut(s)	36, 304
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	3 cut(s)	121, 136, 217
FaiI	YATR	3 cut(s)	119, 134, 215
FatI	CATG	3 cut(s)	117, 132, 213
Fnu4HI	GCNGC	3 cut(s)	27, 30, 185
FokI	GGATG	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	27, 30, 185
FspBI	CTAG	1 cut(s)	41
GluI	GCNGC	3 cut(s)	27, 30, 185
HaeIII	GGCC	3 cut(s)	125, 174, 335
Hin1II	CATG	3 cut(s)	121, 136, 217
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	422
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	3 cut(s)	17, 160, 284
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	260, 412
Hpy8I	GTNNAC	3 cut(s)	17, 160, 284
Hpy99I	CGWCG	4 cut(s)	113, 143, 158, 170
HpyAV	CCTTC	2 cut(s)	115, 164
HpyCH4III	ACNGT	3 cut(s)	139, 205, 247
HpyCH4V	TGCA	3 cut(s)	105, 301, 385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 332, 391
Hsp92II	CATG	3 cut(s)	121, 136, 217
Kzo9I	GATC	2 cut(s)	36, 304
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	5, 287, 322, 349, 363, 425
Lsp1109I	GCAGC	2 cut(s)	13, 16
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	41
MaeIII	GTNAC	2 cut(s)	92, 247
MalI	GATC	2 cut(s)	38, 306
MboI	GATC	2 cut(s)	36, 304
MboII	GAAGA	4 cut(s)	125, 302, 305, 412
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	3 cut(s)	8, 218, 255
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	3 cut(s)	199, 256, 287
Mph1103I	ATGCAT	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	236
MseI	TTAA	2 cut(s)	228, 309
MspCI	CTTAAG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	337
MvaI	CCWGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	3 cut(s)	323, 332, 391
NdeII	GATC	2 cut(s)	36, 304
NlaIII	CATG	3 cut(s)	121, 136, 217
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	28, 31, 186
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	228, 309
SatI	GCNGC	3 cut(s)	27, 30, 185
Sau3AI	GATC	2 cut(s)	36, 304
ScaI	AGTACT	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	8 cut(s)	84, 201, 228, 275, 279, 382, 407, 426
SfaNI	GCATC	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	3 cut(s)	8, 218, 255
SsiI	CCGC	2 cut(s)	73, 185
SspMI	CTAG	1 cut(s)	41
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	139, 205, 247
TaqI	TCGA	3 cut(s)	78, 111, 240
TasI	AATT	3 cut(s)	8, 218, 255
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	187
Tru1I	TTAA	2 cut(s)	228, 309
Tru9I	TTAA	2 cut(s)	228, 309
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	2 cut(s)	26, 29
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	134
TspGWI	ACGGA	2 cut(s)	142, 269
TspRI	CASTG	1 cut(s)	250
Vha464I	CTTAAG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	328
XmaJI	CCTAGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	236
XspI	CTAG	1 cut(s)	41
ZrmI	AGTACT	1 cut(s)	149
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.