Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

51056981 .. 51058728

Gene Structure 1748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1214100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTACCAAACTAGTAAATTGCTGCGAAGTATACCCAACACAAGCCAAGGGATTCCAGATTTTCCGAGTCCGACTCACTTCCTAAGAGAACGAAGAAAAAACCCCTTTCCTCTCGATTTCTCTCCGAGTCAGTCCGAGTCGCAGCGGTTTTTTTTTTCCCACCCGAGTCGTCACTCAGTCACAGCAATGATCGGATTGCGTCTTCTACTTGCTGCCGTGATCGCAGGGTTTTTATTGTCTACATCCGAATCTCTACGGTTCGAGCTGCAATCGGGTCACACGAAATGCATCGTGGAAGACATAAAATCCAGCGCCATGACCGTCGGAAAATACAGCATCGTCAACCCCATCGAAGGCCAGCCCATGCCCAATTCTCACAAGTTGACCGTCCGGGTGACGTCGCACTACGGAAATAGCTATCACTATTCGGAGCTGGTGGAATCGGGGCAGTTTGCGTTTGTGGCGGCGGAGGCGGGAGATTACATGGCGTGCTTCTGGGCGCCGGATTTCAAGCCCCAGACGACGTTGACCATCGAATTCGATTGGAAAACCGGCGTCGCCGCCAAGGACTGGTCCAATGTCGCCAAGAAAGGCACCGTTGACGTCATGGAATTGGAGCTTCAAAAGTTGTTTGGTACGGTTACTTCCATTCAAGAGGAGATGTTCTATCTCCGCGAAAGGGAAGGAGAGATGCAGGATCTTAACAGAGCGACAAACTCGAAAATGGCCTGGCTGAGTCTTCTTTCGCTTATTGTTTGCTTATCGGTTGTGGGTTTACAAGTGTGGCACCTGAAGACATTTTTCGAGAAGAAGAAGGTTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

275

Amino Acids

31.03

Weight (kDa)

8.35

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	85 - 269	1.4e-47	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	401, 606
AccB1I	GGYRCC	3 cut(s)	499, 593, 786
AccB7I	CCANNNNNTGG	1 cut(s)	570
AccI	GTMKAC	2 cut(s)	31, 239
AccII	CGCG	1 cut(s)	675
AciI	CCGC	6 cut(s)	145, 464, 467, 473, 561, 673
AclWI	GGATC	1 cut(s)	705
AcsI	RAATTY	1 cut(s)	536
AcuI	CTGAAG	1 cut(s)	812
AcyI	GRCGYC	4 cut(s)	398, 500, 555, 603
AfaI	GTAC	2 cut(s)	5, 637
AfiI	CCNNNNNNNGG	3 cut(s)	353, 570, 679
AgsI	TTSAA	3 cut(s)	511, 623, 653
AhlI	ACTAGT	1 cut(s)	11
AjnI	CCWGG	1 cut(s)	728
AluBI	AGCT	4 cut(s)	265, 417, 433, 619
AluI	AGCT	4 cut(s)	265, 417, 433, 619
AlwI	GGATC	1 cut(s)	705
Ama87I	CYCGRG	1 cut(s)	163
AoxI	GGCC	2 cut(s)	355, 726
ApeKI	GCWGC	4 cut(s)	22, 142, 212, 265
ApoI	RAATTY	1 cut(s)	536
AspLEI	GCGC	2 cut(s)	314, 502
AspS9I	GGNCC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	406
AvaI	CYCGRG	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	573
BanI	GGYRCC	3 cut(s)	499, 593, 786
BarI	GAAGNNNNNNTAC	2 cut(s)	628, 660
BbsI	GAAGAC	4 cut(s)	194, 303, 731, 800
BbvI	GCAGC	4 cut(s)	9, 154, 199, 252
BccI	CCATC	2 cut(s)	356, 539
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	392
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	1 cut(s)	12
BfoI	RGCGCY	2 cut(s)	315, 503
BisI	GCNGC	6 cut(s)	23, 143, 213, 266, 465, 561
BlsI	GCNGC	6 cut(s)	24, 144, 214, 267, 466, 562
Bme1390I	CCNGG	2 cut(s)	392, 730
Bme18I	GGWCC	1 cut(s)	573
BmeT110I	CYCGRG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	573
BmiI	GGNNCC	3 cut(s)	501, 595, 788
BmrFI	CCNGG	2 cut(s)	392, 730
BmsI	GCATC	3 cut(s)	297, 345, 681
BpiI	GAAGAC	4 cut(s)	194, 303, 731, 800
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuMI	CCSGG	1 cut(s)	392
BsaHI	GRCGYC	4 cut(s)	398, 500, 555, 603
BsaJI	CCNNGG	2 cut(s)	46, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 570, 679
Bse118I	RCCGGY	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	575
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	2 cut(s)	46, 564
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	353, 570, 679
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	189, 725
BseNI	ACTGG	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	671
BseXI	GCAGC	4 cut(s)	9, 154, 199, 252
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	2 cut(s)	357, 728
BshNI	GGYRCC	3 cut(s)	499, 593, 786
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	3 cut(s)	391, 503, 552
BslI	CCNNNNNNNGG	3 cut(s)	353, 570, 679
BsnI	GGCC	2 cut(s)	357, 728
BsoBI	CYCGRG	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	189, 219, 697
BspACI	CCGC	6 cut(s)	145, 464, 467, 473, 561, 673
BspANI	GGCC	2 cut(s)	357, 728
BspCNI	CTCAG	2 cut(s)	188, 726
BspFNI	CGCG	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	501, 595, 788
BspPI	GGATC	1 cut(s)	705
BspT107I	GGYRCC	3 cut(s)	499, 593, 786
BsrDI	GCAATG	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	575
BssAI	RCCGGY	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	46, 564
BssMI	GATC	3 cut(s)	189, 219, 697
BssNAI	GTATAC	1 cut(s)	32
BssNI	GRCGYC	4 cut(s)	398, 500, 555, 603
BssT1I	CCWWGG	2 cut(s)	46, 564
Bst1107I	GTATAC	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	5 cut(s)	258, 322, 388, 598, 640
BstACI	GRCGYC	4 cut(s)	398, 500, 555, 603
BstC8I	GCNNGC	2 cut(s)	359, 490
BstDEI	CTNAG	3 cut(s)	83, 175, 734
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	2 cut(s)	315, 503
BstHHI	GCGC	2 cut(s)	314, 502
BstKTI	GATC	3 cut(s)	192, 222, 700
BstMBI	GATC	3 cut(s)	189, 219, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 461, 470
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	390, 728
BstUI	CGCG	1 cut(s)	675
BstV1I	GCAGC	4 cut(s)	9, 154, 199, 252
BstV2I	GAAGAC	4 cut(s)	194, 303, 731, 800
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BstZ17I	GTATAC	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	357, 728
BtsCI	GGATG	1 cut(s)	242
Cac8I	GCNNGC	2 cut(s)	359, 490
CfoI	GCGC	2 cut(s)	314, 502
Cfr10I	RCCGGY	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	573
CseI	GACGC	2 cut(s)	188, 544
Csp6I	GTAC	2 cut(s)	4, 636
CviAII	CATG	4 cut(s)	316, 364, 484, 607
CviQI	GTAC	2 cut(s)	4, 636
DdeI	CTNAG	3 cut(s)	83, 175, 734
DinI	GGCGCC	1 cut(s)	501
DpnI	GATC	3 cut(s)	191, 221, 699
DpnII	GATC	3 cut(s)	189, 219, 697
EciI	GGCGGA	1 cut(s)	482
Eco130I	CCWWGG	2 cut(s)	46, 564
Eco47I	GGWCC	1 cut(s)	573
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	163
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	46, 564
EcoT22I	ATGCAT	1 cut(s)	290
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	46, 564
FaeI	CATG	4 cut(s)	319, 367, 487, 610
FaiI	YATR	8 cut(s)	32, 302, 317, 365, 485, 608, 821, 823
FatI	CATG	4 cut(s)	315, 363, 483, 606
FauI	CCCGC	1 cut(s)	466
FblI	GTMKAC	2 cut(s)	31, 239
Fnu4HI	GCNGC	6 cut(s)	23, 143, 213, 266, 465, 561
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	23, 143, 213, 266, 465, 561
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	313, 501
GluI	GCNGC	6 cut(s)	23, 143, 213, 266, 465, 561
HaeII	RGCGCY	2 cut(s)	315, 503
HaeIII	GGCC	2 cut(s)	357, 728
HapII	CCGG	3 cut(s)	391, 503, 552
HgaI	GACGC	2 cut(s)	188, 544
HhaI	GCGC	2 cut(s)	314, 502
Hin1I	GRCGYC	4 cut(s)	398, 500, 555, 603
Hin1II	CATG	4 cut(s)	319, 367, 487, 610
Hin6I	GCGC	2 cut(s)	312, 500
HinP1I	GCGC	2 cut(s)	312, 500
HincII	GTYRAC	4 cut(s)	343, 384, 528, 601
HindII	GTYRAC	4 cut(s)	343, 384, 528, 601
HinfI	GANTC	9 cut(s)	52, 67, 73, 127, 137, 166, 248, 440, 736
HpaII	CCGG	3 cut(s)	391, 503, 552
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	7 cut(s)	32, 240, 343, 384, 528, 601, 776
Hpy188I	TCNGA	8 cut(s)	66, 72, 126, 136, 194, 247, 326, 430
Hpy188III	TCNNGA	4 cut(s)	56, 113, 653, 805
Hpy8I	GTNNAC	7 cut(s)	32, 240, 343, 384, 528, 601, 776
Hpy99I	CGWCG	4 cut(s)	326, 403, 526, 560
HpyAV	CCTTC	3 cut(s)	347, 677, 808
HpyCH4III	ACNGT	5 cut(s)	258, 322, 388, 598, 640
HpyCH4IV	ACGT	3 cut(s)	398, 524, 603
HpyCH4V	TGCA	3 cut(s)	268, 288, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 461, 470
HpyF3I	CTNAG	3 cut(s)	83, 175, 734
HpySE526I	ACGT	3 cut(s)	398, 524, 603
Hsp92I	GRCGYC	4 cut(s)	398, 500, 555, 603
Hsp92II	CATG	4 cut(s)	319, 367, 487, 610
HspAI	GCGC	2 cut(s)	312, 500
KasI	GGCGCC	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	189, 219, 697
LmnI	GCTCC	2 cut(s)	430, 616
Lsp1109I	GCAGC	4 cut(s)	9, 154, 199, 252
LweI	GCATC	3 cut(s)	297, 345, 681
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	3 cut(s)	398, 524, 603
MaeIII	GTNAC	5 cut(s)	170, 178, 275, 394, 640
MalI	GATC	3 cut(s)	191, 221, 699
MboI	GATC	3 cut(s)	189, 219, 697
MboII	GAAGA	7 cut(s)	105, 194, 308, 731, 805, 820, 823
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	4 cut(s)	17, 370, 536, 611
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	6 cut(s)	67, 76, 136, 146, 175, 745
MmeI	TCCRAC	2 cut(s)	95, 304
MnlI	CCTC	3 cut(s)	120, 463, 649
Mph1103I	ATGCAT	1 cut(s)	290
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	145
MspI	CCGG	3 cut(s)	391, 503, 552
MspR9I	CCNGG	2 cut(s)	392, 730
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	221, 461, 470
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	1 cut(s)	392
NdeII	GATC	3 cut(s)	189, 219, 697
NlaIII	CATG	4 cut(s)	319, 367, 487, 610
NlaIV	GGNNCC	3 cut(s)	501, 595, 788
NmuCI	GTSAC	4 cut(s)	170, 178, 275, 394
NsiI	ATGCAT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	52, 248, 440
PflMI	CCANNNNNTGG	1 cut(s)	570
PkrI	GCNGC	6 cut(s)	24, 144, 214, 267, 466, 562
PleI	GAGTC	6 cut(s)	67, 75, 135, 145, 174, 744
PluTI	GGCGCC	1 cut(s)	503
PpsI	GAGTC	6 cut(s)	67, 75, 135, 145, 174, 744
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	3 cut(s)	501, 595, 788
PspPI	GGNCC	1 cut(s)	573
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	2 cut(s)	5, 637
RsaNI	GTAC	2 cut(s)	4, 636
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	6 cut(s)	23, 143, 213, 266, 465, 561
Sau3AI	GATC	3 cut(s)	189, 219, 697
Sau96I	GGNCC	1 cut(s)	573
SchI	GAGTC	6 cut(s)	67, 76, 136, 146, 175, 745
ScrFI	CCNGG	2 cut(s)	392, 730
SetI	ASST	9 cut(s)	267, 401, 419, 435, 527, 606, 621, 792, 819
SfaNI	GCATC	3 cut(s)	297, 345, 681
SfoI	GGCGCC	1 cut(s)	501
SinI	GGWCC	1 cut(s)	573
SmiMI	CAYNNNNRTG	1 cut(s)	185
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	4 cut(s)	17, 370, 536, 611
SsiI	CCGC	6 cut(s)	145, 464, 467, 473, 561, 673
SspDI	GGCGCC	1 cut(s)	499
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	390, 728
StyI	CCWWGG	2 cut(s)	46, 564
TaaI	ACNGT	5 cut(s)	258, 322, 388, 598, 640
TaiI	ACGT	3 cut(s)	401, 527, 606
TaqI	TCGA	7 cut(s)	114, 261, 351, 534, 540, 719, 804
TasI	AATT	4 cut(s)	17, 370, 536, 611
TauI	GCSGC	2 cut(s)	467, 563
TfiI	GAWTC	3 cut(s)	52, 248, 440
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TseFI	GTSAC	4 cut(s)	170, 178, 275, 394
TseI	GCWGC	4 cut(s)	22, 142, 212, 265
Tsp45I	GTSAC	4 cut(s)	170, 178, 275, 394
TspGWI	ACGGA	1 cut(s)	423
Van91I	CCANNNNNTGG	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	573
XapI	RAATTY	1 cut(s)	536
XmiI	GTMKAC	2 cut(s)	31, 239
XspI	CTAG	1 cut(s)	12
ZraI	GACGTC	2 cut(s)	399, 604
Zsp2I	ATGCAT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.