Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Reverse (-)

75801405 .. 75803581

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG578900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCGCCAATATTGATCTGTACATTTCTGATATTGTGCTTAATGTCAACGATGGCGGTTTCGATGCGGTTCGACCTTCAATCTGGCGCCACTAAATGCATCTCAGACGAAATAAAGAGCAATTCCATGACTGTGGGCAAGTACTCCACCGTCAATCCCAATGAGGGCTTTCCTCTTCCTGATACGCACAAAGTCACTGTCAGGGTGACCTCACCTAATGGCAATAATTATCACCATGGGGATCTTGTGGATACGGGTAATTTTGCCTTCACTGCGGCGGAGACTGGTGATTATTCAGTATGCTTTTGGGTAGTTGATCATAAGCCTCCGACCACGGTCACGATTGATTTTGACTGGAAAACTGGAGTTGAGGCCAAGGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAATGATGGAACTCGAGCTGAAAAAGCTGTTTGATACTGTGACGTCCATTCATGATGAGATGTTTTATCTTCGTGAAAGGGAGGAAGAAATGCAACAACTTAATAGAGCAACTAACTCCAAGATGGCGACGTTTAGCTTCCTTTCTCTTGTAGTTTGCTTGTCTGTGGCCGGTTTGCAATTATGGCATCTCAAGATGTTCTTTGAGAGGAAGAAGCTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

211

Amino Acids

23.95

Weight (kDa)

6.07

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP24_GP25L	PF01105	22 - 206	2.7e-52	emp24/gp25L/p24 family/GOLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	458
AccB1I	GGYRCC	1 cut(s)	86
AccB7I	CCANNNNNTGG	1 cut(s)	381
AciI	CCGC	4 cut(s)	56, 67, 275, 278
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	579
AcyI	GRCGYC	2 cut(s)	87, 455
AfaI	GTAC	2 cut(s)	22, 143
AfiI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
AgsI	TTSAA	2 cut(s)	80, 413
AluBI	AGCT	4 cut(s)	430, 439, 549, 628
AluI	AGCT	4 cut(s)	430, 439, 549, 628
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	249
Ama87I	CYCGRG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	372, 579
ArsI	GACNNNNNNTTYG	2 cut(s)	183, 215
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	204, 217, 224, 299
AvaI	CYCGRG	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	86
BccI	CCATC	3 cut(s)	46, 412, 529
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	634
BfoI	RGCGCY	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
BmcAI	AGTACT	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	384
BmeT110I	CYCGRG	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	3 cut(s)	54, 108, 607
BoxI	GACNNNNGTC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	87, 455
BsaJI	CCNNGG	4 cut(s)	235, 333, 375, 387
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 381, 402
Bse118I	RCCGGY	1 cut(s)	581
Bse1I	ACTGG	4 cut(s)	289, 359, 367, 386
BseDI	CCNNGG	4 cut(s)	235, 333, 375, 387
BseLI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	289, 359, 367, 386
BseRI	GAGGAG	1 cut(s)	620
BshFI	GGCC	2 cut(s)	374, 581
BshNI	GGYRCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	164, 381, 402
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	374, 581
BsoBI	CYCGRG	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	20
Bsp143I	GATC	3 cut(s)	15, 241, 316
Bsp19I	CCATGG	1 cut(s)	235
BspACI	CCGC	4 cut(s)	56, 67, 275, 278
BspANI	GGCC	2 cut(s)	374, 581
BspCNI	CTCAG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	581
BsrGI	TGTACA	1 cut(s)	20
BsrI	ACTGG	4 cut(s)	289, 359, 367, 386
BssAI	RCCGGY	1 cut(s)	581
BssECI	CCNNGG	4 cut(s)	235, 333, 375, 387
BssMI	GATC	3 cut(s)	15, 241, 316
BssNI	GRCGYC	2 cut(s)	87, 455
BssT1I	CCWWGG	3 cut(s)	235, 375, 387
Bst4CI	ACNGT	5 cut(s)	133, 151, 199, 337, 451
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	2 cut(s)	87, 455
BstAUI	TGTACA	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	103
BstDSI	CCRYGG	2 cut(s)	235, 333
BstEII	GGTNACC	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	18, 244, 319
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	15, 241, 316
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 436, 595
BstPAI	GACNNNNGTC	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	241
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	374, 581
BtgI	CCRYGG	2 cut(s)	235, 333
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	195, 270
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	21, 142
CviAII	CATG	3 cut(s)	127, 236, 464
CviJI	RGCY	8 cut(s)	168, 325, 374, 430, 439, 549, 581, 628
CviKI_1	RGCY	8 cut(s)	168, 325, 374, 430, 439, 549, 581, 628
CviQI	GTAC	2 cut(s)	21, 142
DdeI	CTNAG	1 cut(s)	103
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	3 cut(s)	17, 243, 318
DpnII	GATC	3 cut(s)	15, 241, 316
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	3 cut(s)	235, 375, 387
Eco47I	GGWCC	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	205
EcoT14I	CCWWGG	3 cut(s)	235, 375, 387
EcoT22I	ATGCAT	1 cut(s)	101
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
ErhI	CCWWGG	3 cut(s)	235, 375, 387
FaeI	CATG	3 cut(s)	130, 239, 467
FaiI	YATR	6 cut(s)	128, 237, 301, 321, 465, 595
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FatI	CATG	3 cut(s)	126, 235, 463
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	634
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	276
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	2 cut(s)	374, 581
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 455
Hin1II	CATG	3 cut(s)	130, 239, 467
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	4 cut(s)	204, 217, 224, 299
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	30, 106, 330
Hpy188III	TCNNGA	5 cut(s)	179, 340, 464, 485, 604
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	544
HpyAV	CCTTC	2 cut(s)	86, 277
HpyCH4III	ACNGT	5 cut(s)	133, 151, 199, 337, 451
HpyCH4IV	ACGT	2 cut(s)	455, 542
HpyCH4V	TGCA	3 cut(s)	99, 505, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 436, 595
HpyF3I	CTNAG	1 cut(s)	103
HpySE526I	ACGT	2 cut(s)	455, 542
Hsp92I	GRCGYC	2 cut(s)	87, 455
Hsp92II	CATG	3 cut(s)	130, 239, 467
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	15, 241, 316
LmnI	GCTCC	1 cut(s)	633
LpnPI	CCDG	8 cut(s)	69, 187, 192, 270, 340, 348, 367, 595
LweI	GCATC	3 cut(s)	54, 108, 607
MaeI	CTAG	1 cut(s)	634
MaeII	ACGT	2 cut(s)	455, 542
MaeIII	GTNAC	4 cut(s)	193, 205, 337, 451
MalI	GATC	3 cut(s)	17, 243, 318
MboI	GATC	3 cut(s)	15, 241, 316
MboII	GAAGA	4 cut(s)	167, 473, 509, 634
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	4 cut(s)	121, 226, 259, 590
Mly113I	GGCGCC	1 cut(s)	87
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	7 cut(s)	157, 183, 220, 336, 364, 487, 612
Mph1103I	ATGCAT	1 cut(s)	101
MseI	TTAA	2 cut(s)	41, 513
MslI	CAYNNNNRTG	1 cut(s)	131
MspI	CCGG	1 cut(s)	582
MwoI	GCNNNNNNNGC	3 cut(s)	272, 436, 595
NarI	GGCGCC	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	235
NdeII	GATC	3 cut(s)	15, 241, 316
NlaIII	CATG	3 cut(s)	130, 239, 467
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	4 cut(s)	193, 205, 337, 451
NsiI	ATGCAT	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	425
PagI	TCATGA	1 cut(s)	463
PflMI	CCANNNNNTGG	1 cut(s)	381
PkrI	GCNGC	1 cut(s)	277
PluTI	GGCGCC	1 cut(s)	90
PshAI	GACNNNNGTC	1 cut(s)	335
PspEI	GGTNACC	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	1 cut(s)	384
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	2 cut(s)	22, 143
RsaNI	GTAC	2 cut(s)	21, 142
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	41, 513
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	3 cut(s)	15, 241, 316
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	143
SfaNI	GCATC	3 cut(s)	54, 108, 607
SfoI	GGCGCC	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	425
SinI	GGWCC	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	425, 602
SmoI	CTYRAG	2 cut(s)	425, 602
Sse9I	AATT	4 cut(s)	121, 226, 259, 590
SsiI	CCGC	4 cut(s)	56, 67, 275, 278
SspDI	GGCGCC	1 cut(s)	86
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	235, 375, 387
TaaI	ACNGT	5 cut(s)	133, 151, 199, 337, 451
TaiI	ACGT	2 cut(s)	458, 545
TaqI	TCGA	3 cut(s)	62, 72, 426
TasI	AATT	4 cut(s)	121, 226, 259, 590
TatI	WGTACW	2 cut(s)	20, 141
TauI	GCSGC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	41, 513
Tru9I	TTAA	2 cut(s)	41, 513
TscAI	CASTG	2 cut(s)	202, 277
TseFI	GTSAC	4 cut(s)	193, 205, 337, 451
Tsp45I	GTSAC	4 cut(s)	193, 205, 337, 451
TspDTI	ATGAA	1 cut(s)	452
TspRI	CASTG	2 cut(s)	202, 277
Van91I	CCANNNNNTGG	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	425
XspI	CTAG	1 cut(s)	634
ZraI	GACGTC	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.