Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001491

Physical Location & Seq

Genomic Coordinates Forward (+)

28324259 .. 28325963

Gene Structure 1705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G279100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGGGTTGCGTCTGCTTGTTGCTGCTGTAATCCTAGGGTTTCTATCGTCTACATCGGAATCTCTGCGGTTCGAGCTGCAATCGGGCCACACCAAATGCATCGTGGAAGACATAAAAGCCAATGCCATGACGGTCGGCAAGTACAGCGTCGTCAACCCTAACGAAGGCCACCCCATTCCCGATTCTCACAAGCTCACCGTCAGGGTGACGTCGCACTATGGGAATAACTATCATTACTCGGAGCTGGTGGAATCGGGGCAGTTCGCATTTGTGGCGGCGGAGGCGGGAGATTACATGGCCTGCTTCTGGGCGCCTGATCACAAGCCCCAAATTACGTTGACCATTGAATTCGATTGGAAGACCGGCGTCGCCGCTAAAGACTGGTCCAATGTGGCCAAGAAAGGCACTGTCGATGTTATGGAATTAGAGCTTAAAAAGTTGTTTGAAACTGTTACTTCCATTCATGAGGAAATGTTCTATCTCCGTCAAAGGGAAGAAGAAATGCAGGAGCTTAACAGAACAACTAACTCCAGAATGGCCTGGTTTAGTTTGCTCTCGCTTTTTGTTTGCTCATCGGTTGCAGCTTTGCAATGGTGGCACTTGAAGACCTTTTTTGAGAAAAAGAAGCTCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005793 GO:0005794 GO:0005798 GO:0005801 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006890 GO:0006900 GO:0006903 GO:0006996 GO:0007030 GO:0008104 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0019222 GO:0019905 GO:0022607 GO:0030133 GO:0030135 GO:0030136 GO:0030137 GO:0030140 GO:0030141 GO:0030659 GO:0030667 GO:0031090 GO:0031224 GO:0031323 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0034248 GO:0034613 GO:0035964 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044877 GO:0045055 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048194 GO:0048199 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051259 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060255 GO:0061024 GO:0065003 GO:0065007 GO:0070727 GO:0070765 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098588 GO:0098796 GO:0098797 GO:0098805 GO:0099503 GO:1902003 GO:1902991

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP24_GP25L

Protein Analysis

213

Amino Acids

24.16

Weight (kDa)

6.24

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14010 AT1G26690 AT2G03040 AT2G03290
fragaria_vesca	FvH4_4g30790 FvH4_6g48050
malus_domestica	MD00G1214100.v1.1 MD09G1054500.v1.1 MD15G1422900.v1.1 MD16G1067700.v1.1 MD17G1052400.v1.1
prunus_persica	Prupe.1G279100_v2.0.a1 Prupe.3G264000_v2.0.a1
pyrus_communis	pycom111g04580 pycom13g06060 pycom13g06070 pycom16g05910 pycom16g05920 pycom17g04930
rosa_chinensis	RchiOBHm_Chr1g0316241 RchiOBHm_Chr1g0316281 RchiOBHm_Chr2g0167341 RchiOBHm_Chr4g0439181
rosa_laevigata	RLG00000006290 RLG00000021710 RLG00000021729 RLG00000022059 RLG00000023281
rosa_multiflora	Rmu_sc0001840.1_g000010 Rmu_sc0002236.1_g000009 Rmu_sc0002531.1_g000018 Rmu_sc0007793.1_g000012 Rmu_sc0018330.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083580 Rroxscaffold_5G00380170
rosa_rugosa	Rorug02G0529700 Rorug04G0316400
rosa_samantha	Rh1DG014200 Rh2AG596700 Rh2BG608100 Rh2CG578900 Rh2DG619500 Rh4AG367300 Rh4BG378900 Rh4CG393300 Rh4DG373500
rosa_wichuraiana	Rw0G011670 Rw1G001280 Rw2G049660 Rw3G022980 Rw5G028510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	313
AccI	GTMKAC	1 cut(s)	53
AciI	CCGC	5 cut(s)	70, 278, 281, 287, 375
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	3 cut(s)	212, 314, 369
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	167, 309, 493
AgsI	TTSAA	3 cut(s)	350, 449, 607
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	7 cut(s)	79, 196, 247, 433, 514, 587, 631
AluI	AGCT	7 cut(s)	79, 196, 247, 433, 514, 587, 631
AoxI	GGCC	5 cut(s)	88, 169, 300, 396, 540
ApeKI	GCWGC	3 cut(s)	26, 79, 584
ApoI	RAATTY	1 cut(s)	350
AspA2I	CCTAGG	1 cut(s)	37
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	88, 387
AsuHPI	GGTGA	2 cut(s)	190, 220
AvaII	GGWCC	1 cut(s)	387
AvrII	CCTAGG	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	313
BbsI	GAAGAC	3 cut(s)	117, 368, 614
BbvI	GCAGC	3 cut(s)	13, 66, 596
BciT130I	CCWGG	1 cut(s)	544
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	1 cut(s)	38
BfoI	RGCGCY	1 cut(s)	317
BisI	GCNGC	5 cut(s)	27, 80, 279, 375, 585
BlnI	CCTAGG	1 cut(s)	37
BlsI	GCNGC	5 cut(s)	28, 81, 280, 376, 586
Bme1390I	CCNGG	1 cut(s)	544
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	88, 387
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	544
BmsI	GCATC	1 cut(s)	111
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	3 cut(s)	117, 368, 614
BpmI	CTGGAG	1 cut(s)	517
BsaHI	GRCGYC	3 cut(s)	212, 314, 369
BsaJI	CCNNGG	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 309, 493
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	37
BseLI	CCNNNNNNNGG	3 cut(s)	167, 309, 493
BseMI	GCAATG	1 cut(s)	599
BseNI	ACTGG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	13, 66, 596
BseYI	CCCAGC	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	5 cut(s)	90, 171, 302, 398, 542
BshNI	GGYRCC	1 cut(s)	313
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	366
BslI	CCNNNNNNNGG	3 cut(s)	167, 309, 493
BsnI	GGCC	5 cut(s)	90, 171, 302, 398, 542
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	5 cut(s)	70, 278, 281, 287, 375
BspANI	GGCC	5 cut(s)	90, 171, 302, 398, 542
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	315
BspT107I	GGYRCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	599
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	389
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	3 cut(s)	212, 314, 369
BssT1I	CCWWGG	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	4 cut(s)	136, 202, 412, 454
BstACI	GRCGYC	3 cut(s)	212, 314, 369
BstC8I	GCNNGC	1 cut(s)	304
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 147, 275, 284, 598
BstNI	CCWGG	1 cut(s)	544
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	542
BstV1I	GCAGC	3 cut(s)	13, 66, 596
BstV2I	GAAGAC	3 cut(s)	117, 368, 614
BsuRI	GGCC	5 cut(s)	90, 171, 302, 398, 542
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	88, 387
CseI	GACGC	3 cut(s)	2, 139, 358
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	3 cut(s)	130, 298, 467
CviQI	GTAC	1 cut(s)	145
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	387
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	3 cut(s)	133, 301, 470
FaiI	YATR	6 cut(s)	116, 131, 222, 299, 422, 468
FatI	CATG	3 cut(s)	129, 297, 466
FauI	CCCGC	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	5 cut(s)	27, 80, 279, 375, 585
Fsp4HI	GCNGC	5 cut(s)	27, 80, 279, 375, 585
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	5 cut(s)	27, 80, 279, 375, 585
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	517
HaeII	RGCGCY	1 cut(s)	317
HaeIII	GGCC	5 cut(s)	90, 171, 302, 398, 542
HapII	CCGG	1 cut(s)	366
HgaI	GACGC	3 cut(s)	2, 139, 358
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	3 cut(s)	212, 314, 369
Hin1II	CATG	3 cut(s)	133, 301, 470
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	2 cut(s)	157, 342
HindII	GTYRAC	2 cut(s)	157, 342
HinfI	GANTC	3 cut(s)	62, 185, 254
HpaII	CCGG	1 cut(s)	366
HphI	GGTGA	2 cut(s)	190, 220
Hpy166II	GTNNAC	3 cut(s)	54, 157, 342
Hpy188I	TCNGA	2 cut(s)	61, 244
Hpy188III	TCNNGA	3 cut(s)	182, 467, 534
Hpy8I	GTNNAC	3 cut(s)	54, 157, 342
Hpy99I	CGWCG	3 cut(s)	155, 217, 374
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	4 cut(s)	136, 202, 412, 454
HpyCH4IV	ACGT	2 cut(s)	212, 338
HpyCH4V	TGCA	5 cut(s)	82, 102, 508, 584, 592
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 147, 275, 284, 598
HpySE526I	ACGT	2 cut(s)	212, 338
Hsp92I	GRCGYC	3 cut(s)	212, 314, 369
Hsp92II	CATG	3 cut(s)	133, 301, 470
HspAI	GCGC	1 cut(s)	314
KasI	GGCGCC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	2 cut(s)	244, 511
Lsp1109I	GCAGC	3 cut(s)	13, 66, 596
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	2 cut(s)	212, 338
MaeIII	GTNAC	2 cut(s)	208, 454
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	5 cut(s)	122, 373, 509, 512, 619
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	3 cut(s)	333, 350, 425
MluNI	TGGCCA	1 cut(s)	398
Mly113I	GGCGCC	1 cut(s)	314
MnlI	CCTC	2 cut(s)	277, 463
Mox20I	TGGCCA	1 cut(s)	398
Mph1103I	ATGCAT	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	435, 516
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	544
MwoI	GCNNNNNNNGC	5 cut(s)	76, 147, 275, 284, 598
NarI	GGCGCC	1 cut(s)	314
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	133, 301, 470
NlaIV	GGNNCC	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	104
PagI	TCATGA	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	62, 185, 254
PkrI	GCNGC	5 cut(s)	28, 81, 280, 376, 586
PluTI	GGCGCC	1 cut(s)	317
PshAI	GACNNNNGTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	542
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	315
PspPI	GGNCC	2 cut(s)	88, 387
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	435, 516
SatI	GCNGC	5 cut(s)	27, 80, 279, 375, 585
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	88, 387
ScrFI	CCNGG	1 cut(s)	544
SfaNI	GCATC	1 cut(s)	111
SfoI	GGCGCC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	333, 350, 425
SsiI	CCGC	5 cut(s)	70, 278, 281, 287, 375
SspDI	GGCGCC	1 cut(s)	313
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	542
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	4 cut(s)	136, 202, 412, 454
TaiI	ACGT	2 cut(s)	215, 341
TaqI	TCGA	3 cut(s)	75, 354, 414
TasI	AATT	3 cut(s)	333, 350, 425
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	2 cut(s)	281, 377
TfiI	GAWTC	3 cut(s)	62, 185, 254
Tru1I	TTAA	2 cut(s)	435, 516
Tru9I	TTAA	2 cut(s)	435, 516
TscAI	CASTG	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	3 cut(s)	26, 79, 584
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	455
TspGWI	ACGGA	1 cut(s)	476
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	387
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmaJI	CCTAGG	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	53
XspI	CTAG	1 cut(s)	38
ZraI	GACGTC	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.